Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004351

Physical Location & Seq

Genomic Coordinates Reverse (-)

57261764 .. 57263461

Gene Structure 1698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0438900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCTGGTGAGTACAACAAAAGCCACGAGTACGAGACCAAGGCCGAGGAGGGCGGTCCAGTTGAGACCCAGGATCGTGGGTTATTTGATTTCTTGGGTAAGAAGAAGGAGGAGGAGAAGCCTATTCATCCTGAACAGGAGGAGGTGATTGTCACCGAGTTCGAGAAAGTCAAGGTGTCTGAGCCTGAGCCAGCTTATGTAGACTGCAGCAAACCTGCAGAGCATGGTTATCATCATGAGGAACATAAGGAGGAGGAGGTGGAGAAGAAGCACGAAACTCTATCCGAGAAGCTTCGCCGATCCGACAGCAGCTCTAGCTCGTCTAGCGACGAGGAAGGAGACGACGAAGAGAAAAAACAGAAGAGGAAGGAGAAGAAGGGACTGAAGGAAAAGATCAAGGGGAAGATCTCCGGCGACAAAGAAGAAGAGAAGAAACACGGCTACGAGCAGGACACTGAGATCCCGGTGGAGAAGTTCCACGAGGAACACGGCCATCCCTACGATCACGGCCCAGTCGTCCACCACCATGAGGAGCCAAAAGTTGAACCAACTGCTGTGTACGGAGAGGAGGAGAAGAAAGAGGACGAGAAGAAGGGTTTCCTTGAGAAGATCAAGGACAAGCTTCCCGGACACAAGAAGCCAGAGGATGGTCCAGTTGCGTCTCCACCACCGCCGGAGTATGAAAATGTTGAGCCTGCTTATCATGAAGGTGAGGTGAAGGAGAAGAAGGGTTTATTGGAGAAGATCAAGGAGAAGATTCCCGGGTACCATCCCAAGACTGAGGAAGAGAAGGAGAAGGAAAAGGAGAAAGAGAAGCCAACTGGTTCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 bHLH-MYC_N

Protein Analysis

277

Amino Acids

32.01

Weight (kDa)

5.28

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	68 - 211	1.5e-17	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74580 AT1G74580 AT1G74580
fragaria_vesca	FvH4_5g15040
malus_domestica	MD06G1192500.v1.1
prunus_persica	Prupe.5G192300_v2.0.a1 Prupe.5G192300_v2.0.a1 Prupe.5G192300_v2.0.a1 Prupe.5G192300_v2.0.a1
pyrus_communis	pycom06g17060
rosa_chinensis	RchiOBHm_Chr7g0181161
rosa_laevigata	RLG00000005208
rosa_multiflora	Rmu_sc0001147.1_g000017 Rmu_sc0027076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272220
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0438800 Rorug06G0438800 Rorug06G0438900 Rorug06G0439000 Rorug06G0439100 Rorug06G0439200 Rorug06G0439300 Rorug06G0439400
rosa_samantha	Rh7AG040900 Rh7BG040300 Rh7CG042300 Rh7DG040700
rosa_wichuraiana	Rw7G003380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
Acc65I	GGTACC	1 cut(s)	765
AccB1I	GGYRCC	1 cut(s)	765
AccB7I	CCANNNNNTGG	1 cut(s)	647
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	2 cut(s)	54, 671
AclWI	GGATC	3 cut(s)	81, 294, 454
AcoI	YGGCCR	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	4 cut(s)	14, 32, 560, 767
AfiI	CCNNNNNNNGG	2 cut(s)	529, 647
AgsI	TTSAA	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	5 cut(s)	194, 292, 312, 318, 622
AluI	AGCT	5 cut(s)	194, 292, 312, 318, 622
Alw26I	GTCTC	4 cut(s)	29, 59, 333, 666
AlwI	GGATC	3 cut(s)	81, 294, 454
Ama87I	CYCGRG	1 cut(s)	761
AoxI	GGCC	3 cut(s)	42, 490, 508
ApeKI	GCWGC	2 cut(s)	207, 309
Asp700I	GAANNNNTTC	1 cut(s)	596
Asp718I	GGTACC	1 cut(s)	765
AspS9I	GGNCC	3 cut(s)	56, 509, 650
AsuC2I	CCSGG	4 cut(s)	464, 627, 762, 763
AsuHPI	GGTGA	5 cut(s)	20, 145, 157, 722, 727
AvaI	CYCGRG	1 cut(s)	761
AvaII	GGWCC	2 cut(s)	56, 650
BanI	GGYRCC	1 cut(s)	765
BauI	CACGAG	2 cut(s)	26, 479
BbvI	GCAGC	2 cut(s)	219, 321
BccI	CCATC	3 cut(s)	501, 641, 777
BceAI	ACGGC	3 cut(s)	454, 505, 523
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	4 cut(s)	464, 627, 762, 763
BcoDI	GTCTC	4 cut(s)	29, 59, 333, 666
BfaI	CTAG	2 cut(s)	315, 324
BfmI	CTRYAG	2 cut(s)	205, 216
BfuAI	ACCTGC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	2 cut(s)	208, 310
BlsI	GCNGC	2 cut(s)	209, 311
Bme1390I	CCNGG	5 cut(s)	71, 464, 627, 762, 763
Bme18I	GGWCC	2 cut(s)	56, 650
BmeT110I	CYCGRG	1 cut(s)	761
BmgT120I	GGNCC	3 cut(s)	56, 509, 650
BmiI	GGNNCC	2 cut(s)	534, 767
BmrFI	CCNGG	5 cut(s)	71, 464, 627, 762, 763
BmrI	ACTGGG	1 cut(s)	506
BmuI	ACTGGG	1 cut(s)	506
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	623
BpuMI	CCSGG	4 cut(s)	464, 627, 762, 763
BsaI	GGTCTC	2 cut(s)	29, 59
BsaJI	CCNNGG	4 cut(s)	39, 45, 69, 761
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 647
Bse1I	ACTGG	4 cut(s)	59, 512, 653, 826
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	4 cut(s)	39, 45, 69, 761
BseGI	GGATG	4 cut(s)	127, 493, 652, 769
BseLI	CCNNNNNNNGG	2 cut(s)	529, 647
BseMII	CTCAG	4 cut(s)	171, 177, 447, 771
BseNI	ACTGG	4 cut(s)	59, 512, 653, 826
BseRI	GAGGAG	9 cut(s)	62, 125, 128, 155, 266, 269, 545, 581, 584
BseXI	GCAGC	2 cut(s)	219, 321
BshFI	GGCC	3 cut(s)	44, 492, 510
BshNI	GGYRCC	1 cut(s)	765
BsiHKCI	CYCGRG	1 cut(s)	761
BsiSI	CCGG	5 cut(s)	411, 464, 627, 674, 762
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	2 cut(s)	529, 647
BsmAI	GTCTC	4 cut(s)	29, 59, 333, 666
BsmBI	CGTCTC	2 cut(s)	333, 666
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	3 cut(s)	44, 492, 510
Bso31I	GGTCTC	2 cut(s)	29, 59
BsoBI	CYCGRG	1 cut(s)	761
Bsp143I	GATC	8 cut(s)	73, 299, 393, 405, 459, 502, 609, 744
BspACI	CCGC	2 cut(s)	54, 671
BspANI	GGCC	3 cut(s)	44, 492, 510
BspCNI	CTCAG	4 cut(s)	172, 178, 448, 772
BspHI	TCATGA	2 cut(s)	235, 703
BspLI	GGNNCC	2 cut(s)	534, 767
BspMAI	CTGCAG	2 cut(s)	209, 220
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	3 cut(s)	81, 294, 454
BspT107I	GGYRCC	1 cut(s)	765
BspTNI	GGTCTC	2 cut(s)	29, 59
BsrI	ACTGG	4 cut(s)	59, 512, 653, 826
BssECI	CCNNGG	4 cut(s)	39, 45, 69, 761
BssMI	GATC	8 cut(s)	73, 299, 393, 405, 459, 502, 609, 744
BssSI	CACGAG	2 cut(s)	26, 479
BssT1I	CCWWGG	1 cut(s)	39
Bst2BI	CACGAG	2 cut(s)	26, 479
Bst2UI	CCWGG	1 cut(s)	71
Bst6I	CTCTTC	4 cut(s)	342, 356, 420, 780
BstC8I	GCNNGC	2 cut(s)	192, 696
BstDEI	CTNAG	4 cut(s)	180, 186, 456, 780
BstF5I	GGATG	4 cut(s)	127, 493, 652, 769
BstKTI	GATC	8 cut(s)	76, 302, 396, 408, 462, 505, 612, 747
BstMAI	GTCTC	4 cut(s)	29, 59, 333, 666
BstMBI	GATC	8 cut(s)	73, 299, 393, 405, 459, 502, 609, 744
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 324
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	5 cut(s)	69, 462, 625, 760, 761
BstSFI	CTRYAG	2 cut(s)	205, 216
BstV1I	GCAGC	2 cut(s)	219, 321
BstX2I	RGATCY	2 cut(s)	405, 459
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	2 cut(s)	405, 459
BsuRI	GGCC	3 cut(s)	44, 492, 510
BtsCI	GGATG	4 cut(s)	127, 493, 652, 769
BtsIMutI	CAGTG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	192, 696
CciI	TCATGA	2 cut(s)	235, 703
Cfr13I	GGNCC	3 cut(s)	56, 509, 650
Cfr9I	CCCGGG	1 cut(s)	761
CseI	GACGC	1 cut(s)	648
Csp6I	GTAC	4 cut(s)	13, 31, 559, 766
CviAII	CATG	4 cut(s)	224, 236, 527, 704
CviQI	GTAC	4 cut(s)	13, 31, 559, 766
DdeI	CTNAG	4 cut(s)	180, 186, 456, 780
DpnI	GATC	8 cut(s)	75, 301, 395, 407, 461, 504, 611, 746
DpnII	GATC	8 cut(s)	73, 299, 393, 405, 459, 502, 609, 744
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	4 cut(s)	342, 356, 420, 780
EarI	CTCTTC	4 cut(s)	342, 356, 420, 780
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	2 cut(s)	29, 59
Eco47I	GGWCC	2 cut(s)	56, 650
Eco57I	CTGAAG	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	761
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	2 cut(s)	333, 666
FaeI	CATG	4 cut(s)	227, 239, 530, 707
FaiI	YATR	7 cut(s)	198, 225, 237, 246, 528, 681, 705
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	4 cut(s)	223, 235, 526, 703
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	208, 310
FokI	GGATG	4 cut(s)	114, 480, 659, 756
Fsp4HI	GCNGC	2 cut(s)	208, 310
FspBI	CTAG	2 cut(s)	315, 324
GluI	GCNGC	2 cut(s)	208, 310
HaeIII	GGCC	3 cut(s)	44, 492, 510
HapII	CCGG	5 cut(s)	411, 464, 627, 674, 762
HgaI	GACGC	1 cut(s)	648
Hin1II	CATG	4 cut(s)	227, 239, 530, 707
HindIII	AAGCTT	2 cut(s)	290, 620
HinfI	GANTC	1 cut(s)	757
HpaII	CCGG	5 cut(s)	411, 464, 627, 674, 762
HphI	GGTGA	5 cut(s)	20, 145, 157, 722, 727
Hpy166II	GTNNAC	3 cut(s)	202, 520, 559
Hpy188I	TCNGA	3 cut(s)	181, 286, 304
Hpy188III	TCNNGA	4 cut(s)	131, 163, 236, 704
Hpy8I	GTNNAC	3 cut(s)	202, 520, 559
Hpy99I	CGWCG	2 cut(s)	332, 347
HpyCH4V	TGCA	2 cut(s)	207, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 324
HpyF3I	CTNAG	4 cut(s)	180, 186, 456, 780
Hsp92II	CATG	4 cut(s)	227, 239, 530, 707
KpnI	GGTACC	1 cut(s)	769
Kzo9I	GATC	8 cut(s)	73, 299, 393, 405, 459, 502, 609, 744
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	2 cut(s)	219, 321
MaeI	CTAG	2 cut(s)	315, 324
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	8 cut(s)	75, 301, 395, 407, 461, 504, 611, 746
MboI	GATC	8 cut(s)	73, 299, 393, 405, 459, 502, 609, 744
MflI	RGATCY	2 cut(s)	405, 459
MmeI	TCCRAC	1 cut(s)	327
MroXI	GAANNNNTTC	1 cut(s)	596
MslI	CAYNNNNRTG	2 cut(s)	525, 708
MspI	CCGG	5 cut(s)	411, 464, 627, 674, 762
MspR9I	CCNGG	5 cut(s)	71, 464, 627, 762, 763
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	315, 324
NciI	CCSGG	4 cut(s)	464, 627, 762, 763
NdeII	GATC	8 cut(s)	73, 299, 393, 405, 459, 502, 609, 744
NlaIII	CATG	4 cut(s)	227, 239, 530, 707
NlaIV	GGNNCC	2 cut(s)	534, 767
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	2 cut(s)	235, 703
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	757
PflMI	CCANNNNNTGG	1 cut(s)	647
PfoI	TCCNGGA	1 cut(s)	625
PkrI	GCNGC	2 cut(s)	209, 311
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	534, 767
PspPI	GGNCC	3 cut(s)	56, 509, 650
PstI	CTGCAG	2 cut(s)	209, 220
PsuI	RGATCY	2 cut(s)	405, 459
RsaI	GTAC	4 cut(s)	14, 32, 560, 767
RsaNI	GTAC	4 cut(s)	13, 31, 559, 766
RseI	CAYNNNNRTG	2 cut(s)	525, 708
SatI	GCNGC	2 cut(s)	208, 310
Sau3AI	GATC	8 cut(s)	73, 299, 393, 405, 459, 502, 609, 744
Sau96I	GGNCC	3 cut(s)	56, 509, 650
ScrFI	CCNGG	5 cut(s)	71, 464, 627, 762, 763
SfcI	CTRYAG	2 cut(s)	205, 216
SinI	GGWCC	2 cut(s)	56, 650
SmaI	CCCGGG	1 cut(s)	763
SmiMI	CAYNNNNRTG	2 cut(s)	525, 708
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
SsiI	CCGC	2 cut(s)	54, 671
SspMI	CTAG	2 cut(s)	315, 324
StyD4I	CCNGG	5 cut(s)	69, 462, 625, 760, 761
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	1 cut(s)	162
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	757
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	207, 309
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	3 cut(s)	116, 696, 720
TspGWI	ACGGA	1 cut(s)	576
TspMI	CCCGGG	1 cut(s)	761
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	647
VpaK11BI	GGWCC	2 cut(s)	56, 650
XmaI	CCCGGG	1 cut(s)	761
XmiI	GTMKAC	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	2 cut(s)	315, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.