AT1G76020

Thioredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009565
Physical Location & Seq
Reverse (-)
28532045 .. 28533694
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76020.1

Sequence Viewer

Length: 678 bp
ATGATTCGAGCGGTTCTCCTGTTCCTTGTCTTCGTCGTTGAGACGAGAGTACAAGCGCAGCTAGTGCCGCCGGTGAGGCAAGATGGTTTCGTTTACCCACCGGGTCATCGTTTCGACCCGGATACTATACTAATTGAGGCGTATTTTGACCCGGTTTGCCCGGACAGTAGAGACTCTTGGCCGCCACTGAAGCAAGCTCTTCATCACTATGGATCTCGCGTTGCCCTTCTCCTCCATCTCCTTCCTTTACCCTACCATGACAATGCCTATGTAACATCACGGGCCTTACACATTGTGAATACCGTACACGCCAATGCTACCTTCAGTTTGCTGGAAGGGTTCTTCAAGCATCAGTCATTGTTTTACAACGCGCAAACACAACTCCTTTCAAGACCTGCAGTTGTGGAGAAAATAGTCGAACTTGGAACAGTCTCGTTGGGGAACTCATATCAATCGGTTCTTAAATCCGGCTTCAGCGACAAAAAATCGGATCGTGCAACCAGAGTTTCCTTCAAGTATAGCGCTTCAAGAGGGGTTTATGGTACACCAACCTTCTACGTTAACGGGTTTGTATTGTCTGATGCTGCTTCCCCTTCAAATTTTGGAGGATGGAAGAAAATCATTGATCCTCTGGTTCAAGCACATGAGATGGAAGATAACTTCATTCCCTTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thioredoxin_4

Protein Analysis

225

Amino Acids

25.25

Weight (kDa)

7.9

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin_4 PF13462 45 - 202 5.4e-06 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
AccBSI CCGCTC 1 cut(s) 11
AccII CGCG 2 cut(s) 219, 371
AciI CCGC 3 cut(s) 11, 68, 182
AclWI GGATC 3 cut(s) 220, 498, 620
AcoI YGGCCR 1 cut(s) 179
AcsI RAATTY 1 cut(s) 598
AcuI CTGAAG 3 cut(s) 209, 307, 457
AdeI CACNNNGTG 1 cut(s) 295
AfaI GTAC 3 cut(s) 51, 306, 544
AfeI AGCGCT 1 cut(s) 523
AgsI TTSAA 6 cut(s) 346, 390, 514, 528, 597, 638
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 2 cut(s) 61, 197
AluI AGCT 2 cut(s) 61, 197
Alw26I GTCTC 3 cut(s) 35, 165, 436
AlwI GGATC 3 cut(s) 220, 498, 620
Aor51HI AGCGCT 1 cut(s) 523
AoxI GGCC 2 cut(s) 179, 282
ApeKI GCWGC 2 cut(s) 58, 584
ApoI RAATTY 1 cut(s) 598
AspLEI GCGC 3 cut(s) 58, 373, 524
AspS9I GGNCC 1 cut(s) 282
AsuC2I CCSGG 4 cut(s) 102, 119, 152, 161
AsuHPI GGTGA 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 70, 571
BccI CCATC 4 cut(s) 77, 243, 603, 643
BciVI GTATCC 1 cut(s) 115
BcnI CCSGG 4 cut(s) 102, 119, 152, 161
BcoDI GTCTC 3 cut(s) 35, 165, 436
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 403
BfuI GTATCC 1 cut(s) 115
BglI GCCNNNNNGGC 1 cut(s) 76
BisI GCNGC 4 cut(s) 59, 68, 182, 585
BlsI GCNGC 4 cut(s) 60, 69, 183, 586
Bme1390I CCNGG 4 cut(s) 102, 119, 152, 161
BmgT120I GGNCC 1 cut(s) 282
BmrFI CCNGG 4 cut(s) 102, 119, 152, 161
BmsI GCATC 2 cut(s) 358, 571
BpiI GAAGAC 1 cut(s) 22
BplI GAGNNNNNCTC 1 cut(s) 32
BpuMI CCSGG 4 cut(s) 102, 119, 152, 161
Bse118I RCCGGY 1 cut(s) 70
BseGI GGATG 1 cut(s) 614
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 70, 571
Bsh1236I CGCG 2 cut(s) 219, 371
BshFI GGCC 2 cut(s) 181, 284
BsiSI CCGG 6 cut(s) 71, 101, 119, 152, 161, 468
BsmAI GTCTC 3 cut(s) 35, 165, 436
BsmBI CGTCTC 1 cut(s) 35
BsnI GGCC 2 cut(s) 181, 284
Bsp143I GATC 3 cut(s) 212, 490, 625
BspACI CCGC 3 cut(s) 11, 68, 182
BspANI GGCC 2 cut(s) 181, 284
BspFNI CGCG 2 cut(s) 219, 371
BspMAI CTGCAG 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 3 cut(s) 220, 498, 620
BspQI GCTCTTC 1 cut(s) 204
BsrBI CCGCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssMI GATC 3 cut(s) 212, 490, 625
Bst4CI ACNGT 3 cut(s) 167, 304, 430
Bst6I CTCTTC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 195
BstF5I GGATG 1 cut(s) 614
BstFNI CGCG 2 cut(s) 219, 371
BstH2I RGCGCY 1 cut(s) 525
BstHHI GCGC 3 cut(s) 58, 373, 524
BstKTI GATC 3 cut(s) 215, 493, 628
BstMAI GTCTC 3 cut(s) 35, 165, 436
BstMBI GATC 3 cut(s) 212, 490, 625
BstMWI GCNNNNNNNGC 4 cut(s) 64, 67, 76, 190
BstSCI CCNGG 4 cut(s) 100, 117, 150, 159
BstSFI CTRYAG 1 cut(s) 396
BstUI CGCG 2 cut(s) 219, 371
BstV1I GCAGC 2 cut(s) 70, 571
BstV2I GAAGAC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 2 cut(s) 181, 284
BtsCI GGATG 1 cut(s) 614
BtsIMutI CAGTG 1 cut(s) 185
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 195
CfoI GCGC 3 cut(s) 58, 373, 524
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 282
Csp6I GTAC 3 cut(s) 50, 305, 543
CviAII CATG 2 cut(s) 257, 644
CviJI RGCY 5 cut(s) 61, 181, 197, 284, 471
CviKI_1 RGCY 5 cut(s) 61, 181, 197, 284, 471
CviQI GTAC 3 cut(s) 50, 305, 543
DpnI GATC 3 cut(s) 214, 492, 627
DpnII GATC 3 cut(s) 212, 490, 625
DraIII CACNNNGTG 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco47III AGCGCT 1 cut(s) 523
Eco57I CTGAAG 3 cut(s) 209, 307, 457
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 2 cut(s) 260, 647
FaiI YATR 8 cut(s) 128, 210, 258, 270, 448, 519, 540, 645
FatI CATG 2 cut(s) 256, 643
Fnu4HI GCNGC 4 cut(s) 59, 68, 182, 585
FokI GGATG 1 cut(s) 621
Fsp4HI GCNGC 4 cut(s) 59, 68, 182, 585
FspBI CTAG 1 cut(s) 62
GlaI GCGC 3 cut(s) 57, 372, 523
GluI GCNGC 4 cut(s) 59, 68, 182, 585
HaeII RGCGCY 1 cut(s) 525
HaeIII GGCC 2 cut(s) 181, 284
HapII CCGG 6 cut(s) 71, 101, 119, 152, 161, 468
HhaI GCGC 3 cut(s) 58, 373, 524
Hin1II CATG 2 cut(s) 260, 647
Hin6I GCGC 3 cut(s) 56, 371, 522
HinP1I GCGC 3 cut(s) 56, 371, 522
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 2 cut(s) 4, 173
HpaI GTTAAC 1 cut(s) 562
HpaII CCGG 6 cut(s) 71, 101, 119, 152, 161, 468
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 4 cut(s) 94, 307, 545, 562
Hpy188I TCNGA 2 cut(s) 490, 580
Hpy188III TCNNGA 2 cut(s) 390, 528
Hpy8I GTNNAC 4 cut(s) 94, 307, 545, 562
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 7 cut(s) 236, 251, 329, 331, 520, 562, 603
HpyCH4III ACNGT 3 cut(s) 167, 304, 430
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 2 cut(s) 398, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 67, 76, 190
HpySE526I ACGT 1 cut(s) 558
Hsp92II CATG 2 cut(s) 260, 647
HspAI GCGC 3 cut(s) 56, 371, 522
KspAI GTTAAC 1 cut(s) 562
Kzo9I GATC 3 cut(s) 212, 490, 625
LguI GCTCTTC 1 cut(s) 204
Lsp1109I GCAGC 2 cut(s) 70, 571
LweI GCATC 2 cut(s) 358, 571
MaeI CTAG 1 cut(s) 62
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 1 cut(s) 271
MalI GATC 3 cut(s) 214, 492, 627
MbiI CCGCTC 1 cut(s) 11
MboI GATC 3 cut(s) 212, 490, 625
MboII GAAGA 5 cut(s) 22, 191, 334, 625, 665
MflI RGATCY 1 cut(s) 212
MluCI AATT 2 cut(s) 132, 598
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 6 cut(s) 69, 130, 242, 524, 599, 639
MseI TTAA 2 cut(s) 462, 561
MslI CAYNNNNRTG 3 cut(s) 207, 261, 312
MspI CCGG 6 cut(s) 71, 101, 119, 152, 161, 468
MspR9I CCNGG 4 cut(s) 102, 119, 152, 161
MvnI CGCG 2 cut(s) 219, 371
MwoI GCNNNNNNNGC 4 cut(s) 64, 67, 76, 190
NciI CCSGG 4 cut(s) 102, 119, 152, 161
NdeII GATC 3 cut(s) 212, 490, 625
NlaIII CATG 2 cut(s) 260, 647
PciSI GCTCTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 4 cut(s) 60, 69, 183, 586
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 282
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 3 cut(s) 51, 306, 544
RsaNI GTAC 3 cut(s) 50, 305, 543
RseI CAYNNNNRTG 3 cut(s) 207, 261, 312
SapI GCTCTTC 1 cut(s) 204
SaqAI TTAA 2 cut(s) 462, 561
SatI GCNGC 4 cut(s) 59, 68, 182, 585
Sau3AI GATC 3 cut(s) 212, 490, 625
Sau96I GGNCC 1 cut(s) 282
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 4 cut(s) 102, 119, 152, 161
SetI ASST 6 cut(s) 63, 199, 323, 397, 554, 561
SfaNI GCATC 2 cut(s) 358, 571
SfcI CTRYAG 1 cut(s) 396
SgrAI CRCCGGYG 1 cut(s) 70
SmiMI CAYNNNNRTG 3 cut(s) 207, 261, 312
Sse9I AATT 2 cut(s) 132, 598
SsiI CCGC 3 cut(s) 11, 68, 182
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 4 cut(s) 100, 117, 150, 159
TaaI ACNGT 3 cut(s) 167, 304, 430
TaiI ACGT 1 cut(s) 561
TaqI TCGA 3 cut(s) 7, 114, 417
TasI AATT 2 cut(s) 132, 598
TatI WGTACW 1 cut(s) 49
TauI GCSGC 2 cut(s) 70, 184
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 462, 561
Tru9I TTAA 2 cut(s) 462, 561
TscAI CASTG 1 cut(s) 192
TseI GCWGC 2 cut(s) 58, 584
TspDTI ATGAA 2 cut(s) 191, 652
TspRI CASTG 1 cut(s) 192
XapI RAATTY 1 cut(s) 598
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.