FvH4_2g38030

Thioredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009565
Physical Location & Seq
Forward (+)
27564923 .. 27566841
1919 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38030.t1

Sequence Viewer

Length: 678 bp
ATGGTGATGATACAAACAGCTTTACTGTTGCTTTTGGTTTCGGTTTTAAATGGGTATGCACAGACCCTGCCCCCTGCCAAGTACGATGGGTTCTTATACGAGCATCGCCCAGTTGACCCGGATTCGATTCTGATCGAAGCCTTCTTCGACCCGGTCTGCCCTGACAGTCGAGATTCCTGGCCACCCCTCAAGCAGGCCCTTGCCTACTACGGGCCTCATGTCACTCTTGCTGTTCACCTTTTACCGTTGCCTTACCATGACAACGCTTTTGTTGCTTCTCGTGCTTTACACATTGTAAATCAGCTGAAACCTTCTGCGACATTTTCGGTGTTGGAGTGGTTCTTCAAGTATCAGGAGAGGTATTACAATGCTCAAACCCGCAACATTTCTCGAGCTGCTATTGTAGATGACTTAGTGAAGCAACTGACATCTGTAGTTGGGAACTCTTATCATAGTTCCCTGGAATCAGGCTTTACTGACCGGAAAACTGATCTCACAACAAGGGTTTCCTTCAAGTATAGTACTTCAAGAGGGGTGTATGGAACGCCTTTTTTCTATGTAAATGGATTTGTATTGCCTGATGCTGGCGACGCACGAGATTATAACGGATGGAGAAAAGTGCTTGACCCATTAGTTACGGCACCAAAGAAACAGGAAAATCTACATTTCTTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thioredoxin_4

Protein Analysis

226

Amino Acids

25.56

Weight (kDa)

7.06

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AccB1I GGYRCC 1 cut(s) 640
AciI CCGC 1 cut(s) 379
AcoI YGGCCR 1 cut(s) 179
AfaI GTAC 2 cut(s) 83, 523
AfiI CCNNNNNNNGG 3 cut(s) 193, 210, 584
AgsI TTSAA 3 cut(s) 346, 514, 528
AjnI CCWGG 2 cut(s) 176, 459
AluBI AGCT 3 cut(s) 20, 304, 395
AluI AGCT 3 cut(s) 20, 304, 395
AlwNI CAGNNNCTG 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 3 cut(s) 179, 195, 212
ApeKI GCWGC 1 cut(s) 395
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AspS9I GGNCC 2 cut(s) 196, 212
AsuC2I CCSGG 2 cut(s) 119, 152
AsuHPI GGTGA 2 cut(s) 16, 227
AvaI CYCGRG 1 cut(s) 390
BalI TGGCCA 1 cut(s) 181
BanI GGYRCC 1 cut(s) 640
BauI CACGAG 2 cut(s) 279, 594
BbvI GCAGC 1 cut(s) 382
BccI CCATC 2 cut(s) 80, 603
BceAI ACGGC 1 cut(s) 654
BciT130I CCWGG 2 cut(s) 178, 461
BcnI CCSGG 2 cut(s) 119, 152
BfmI CTRYAG 1 cut(s) 432
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 4 cut(s) 119, 152, 178, 461
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 2 cut(s) 196, 212
BmiI GGNNCC 1 cut(s) 642
BmrFI CCNGG 4 cut(s) 119, 152, 178, 461
BmrI ACTGGG 1 cut(s) 104
BmsI GCATC 2 cut(s) 112, 571
BmuI ACTGGG 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 2 cut(s) 119, 152
BsaBI GATNNNNATC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 459
BsaWI WCCGGW 1 cut(s) 480
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 210, 584
Bse1I ACTGG 1 cut(s) 110
Bse8I GATNNNNATC 1 cut(s) 131
BseBI CCWGG 2 cut(s) 178, 461
BseDI CCNNGG 1 cut(s) 459
BseGI GGATG 1 cut(s) 614
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 3 cut(s) 193, 210, 584
BseNI ACTGG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 382
BshFI GGCC 3 cut(s) 181, 197, 214
BshNI GGYRCC 1 cut(s) 640
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 3 cut(s) 119, 152, 481
BslI CCNNNNNNNGG 3 cut(s) 193, 210, 584
BsnI GGCC 3 cut(s) 181, 197, 214
BsoBI CYCGRG 1 cut(s) 390
Bsp143I GATC 2 cut(s) 132, 490
BspACI CCGC 1 cut(s) 379
BspANI GGCC 3 cut(s) 181, 197, 214
BspLI GGNNCC 1 cut(s) 642
BspT107I GGYRCC 1 cut(s) 640
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 2 cut(s) 132, 490
BssSI CACGAG 2 cut(s) 279, 594
Bst2BI CACGAG 2 cut(s) 279, 594
Bst2UI CCWGG 2 cut(s) 178, 461
Bst4CI ACNGT 3 cut(s) 27, 167, 246
BstC8I GCNNGC 2 cut(s) 195, 586
BstDEI CTNAG 1 cut(s) 412
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 614
BstKTI GATC 2 cut(s) 135, 493
BstMBI GATC 2 cut(s) 132, 490
BstMWI GCNNNNNNNGC 3 cut(s) 272, 281, 590
BstNI CCWGG 2 cut(s) 178, 461
BstSCI CCNGG 4 cut(s) 117, 150, 176, 459
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 382
BsuRI GGCC 3 cut(s) 181, 197, 214
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 1 cut(s) 614
Cac8I GCNNGC 2 cut(s) 195, 586
CaiI CAGNNNCTG 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 196, 212
CseI GACGC 1 cut(s) 599
Csp6I GTAC 2 cut(s) 82, 522
CviAII CATG 2 cut(s) 218, 257
CviJI RGCY 8 cut(s) 20, 140, 181, 197, 214, 304, 395, 471
CviKI_1 RGCY 8 cut(s) 20, 140, 181, 197, 214, 304, 395, 471
CviQI GTAC 2 cut(s) 82, 522
DdeI CTNAG 1 cut(s) 412
DpnI GATC 2 cut(s) 134, 492
DpnII GATC 2 cut(s) 132, 490
DraI TTTAAA 1 cut(s) 48
EaeI YGGCCR 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 390
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 176, 459
FaeI CATG 2 cut(s) 221, 260
FaiI YATR 9 cut(s) 57, 97, 219, 258, 453, 519, 540, 558, 603
FatI CATG 2 cut(s) 217, 256
FauI CCCGC 1 cut(s) 386
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 1 cut(s) 621
Fsp4HI GCNGC 1 cut(s) 396
GluI GCNGC 1 cut(s) 396
HaeIII GGCC 3 cut(s) 181, 197, 214
HapII CCGG 3 cut(s) 119, 152, 481
HgaI GACGC 1 cut(s) 599
Hin1II CATG 2 cut(s) 221, 260
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 4 cut(s) 122, 127, 173, 464
HpaII CCGG 3 cut(s) 119, 152, 481
HphI GGTGA 2 cut(s) 16, 227
Hpy166II GTNNAC 2 cut(s) 115, 235
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 4 cut(s) 170, 353, 390, 528
Hpy8I GTNNAC 2 cut(s) 115, 235
Hpy99I CGWCG 1 cut(s) 593
HpyAV CCTTC 3 cut(s) 151, 321, 520
HpyCH4III ACNGT 3 cut(s) 27, 167, 246
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 281, 590
HpyF3I CTNAG 1 cut(s) 412
Hsp92II CATG 2 cut(s) 221, 260
Kzo9I GATC 2 cut(s) 132, 490
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 2 cut(s) 112, 571
MaeIII GTNAC 2 cut(s) 220, 634
MalI GATC 2 cut(s) 134, 492
MboI GATC 2 cut(s) 132, 490
MboII GAAGA 3 cut(s) 136, 334, 661
MlsI TGGCCA 1 cut(s) 181
MluNI TGGCCA 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 4 cut(s) 197, 225, 351, 524
Mox20I TGGCCA 1 cut(s) 181
MscI TGGCCA 1 cut(s) 181
MseI TTAA 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 181
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 3 cut(s) 119, 152, 481
MspR9I CCNGG 4 cut(s) 119, 152, 178, 461
MvaI CCWGG 2 cut(s) 178, 461
MwoI GCNNNNNNNGC 3 cut(s) 272, 281, 590
NciI CCSGG 2 cut(s) 119, 152
NdeII GATC 2 cut(s) 132, 490
NlaIII CATG 2 cut(s) 221, 260
NlaIV GGNNCC 1 cut(s) 642
NmuCI GTSAC 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 390
PfeI GAWTC 4 cut(s) 122, 127, 173, 464
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 397
PsiI TTATAA 1 cut(s) 603
Psp6I CCWGG 2 cut(s) 176, 459
PspGI CCWGG 2 cut(s) 176, 459
PspN4I GGNNCC 1 cut(s) 642
PspPI GGNCC 2 cut(s) 196, 212
PsrI GAACNNNNNNTAC 2 cut(s) 74, 106
PstNI CAGNNNCTG 1 cut(s) 67
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 2 cut(s) 83, 523
RsaNI GTAC 2 cut(s) 82, 522
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 2 cut(s) 132, 490
Sau96I GGNCC 2 cut(s) 196, 212
ScaI AGTACT 1 cut(s) 523
ScrFI CCNGG 4 cut(s) 119, 152, 178, 461
SetI ASST 6 cut(s) 22, 240, 306, 313, 362, 397
SfaNI GCATC 2 cut(s) 112, 571
SfcI CTRYAG 1 cut(s) 432
Sfr274I CTCGAG 1 cut(s) 390
SlaI CTCGAG 1 cut(s) 390
SmlI CTYRAG 2 cut(s) 188, 390
SmoI CTYRAG 2 cut(s) 188, 390
SsiI CCGC 1 cut(s) 379
StyD4I CCNGG 4 cut(s) 117, 150, 176, 459
TaaI ACNGT 3 cut(s) 27, 167, 246
TaqI TCGA 5 cut(s) 125, 135, 147, 169, 391
TatI WGTACW 1 cut(s) 521
TfiI GAWTC 4 cut(s) 122, 127, 173, 464
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 621
Tth111I GACNNNGTC 1 cut(s) 152
XagI CCTNNNNNAGG 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 390
ZrmI AGTACT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.