Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009565

Physical Location & Seq

Genomic Coordinates Forward (+)

657941 .. 660063

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1008700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCGGAACCAAAGCACAGAATCCTTAAACTCGAAACAGCTTTAACGTTGTTGGTCGTGCTGGTTTTGAGCGGATGCGCGCAGAGATTGCCCCCTTCAAAATACGATGGGTTTTTGTACGGACACCACCGAGTTGACTCGGATTCGATCCTGATCGAAGCGTTCTTCGACCCGGTCTGCCCAGACAGTAGGGACGCCTGGCCGCCCCTCAAACAAGTCGTCGAGCACTACGCCCCTCGCGTCACGGTGGCAATTCACCTCTTACCGTTGCCTTACCATGACAATGCTTTCGTTACTTCTCGGGCTCTGCACATCGTAAACCAGCTGAAACCTTCTGCTACATTCCCATTGTTGGAGTGGTTCTTCAAGAATCAGGAGAGGTATTATAATGCTCAAACTCGCAACATGTCCAGGGTTGCTGTTGTAAATGACATAGTGAACTCTGTCACAGAAGTGATTGGGAACTCCTATCACAGCGCCATTGAATTTGGCTTCAATGACCGGAAAACGGATCTGAAAACAAGGGTTTCCTTCAAGTTTAGCGCTTCAAGAGGGGTGTACGGAACACCTACTTTCTTTGTCAATGGATTTGTATTGCCAGATGCTGGCTCCAGTCTAGATTTTAACGGGTGGAAAAAAATCATTGATCCGTTAGTTGTTGGTAACGGGGCGCCGAAGAGCCAAGAAAATGTGCAATTCTTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin_4

Protein Analysis

236

Amino Acids

26.48

Weight (kDa)

8.48

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20225 AT1G76020 AT1G76020 AT1G76020
fragaria_vesca	FvH4_2g38030
malus_domestica	MD08G1008700.v1.1 MD15G1007500.v1.1
prunus_persica	Prupe.1G360400_v2.0.a1 Prupe.1G360400_v2.0.a1
pyrus_communis	pycom08g00690 pycom15g00600
rosa_chinensis	RchiOBHm_Chr6g0303571
rosa_laevigata	RLG00000011072
rosa_multiflora	Rmu_sc0007957.1_g000001 Rmu_ssc0000388.1_g000044
rosa_roxburghii	Rroxscaffold_7G00164620
rosa_rugosa	Rorug06G0322400
rosa_samantha	Rh6AG436900 Rh6BG466500 Rh6CG448800 Rh6DG435600
rosa_wichuraiana	Rw6G037810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	670
AccB7I	CCANNNNNTGG	1 cut(s)	605
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	2 cut(s)	80, 240
AciI	CCGC	3 cut(s)	5, 72, 203
AclI	AACGTT	1 cut(s)	47
AclWI	GGATC	3 cut(s)	142, 519, 641
AcoI	YGGCCR	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	485
AcyI	GRCGYC	2 cut(s)	195, 671
AfaI	GTAC	2 cut(s)	119, 560
AfeI	AGCGCT	1 cut(s)	544
AfiI	CCNNNNNNNGG	3 cut(s)	352, 508, 605
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	6 cut(s)	99, 367, 485, 496, 535, 549
AjnI	CCWGG	2 cut(s)	197, 410
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	2 cut(s)	41, 325
AluI	AGCT	2 cut(s)	41, 325
Alw21I	GWGCWC	1 cut(s)	228
AlwI	GGATC	3 cut(s)	142, 519, 641
AlwNI	CAGNNNCTG	1 cut(s)	605
Ama87I	CYCGRG	1 cut(s)	300
Aor51HI	AGCGCT	1 cut(s)	544
AoxI	GGCC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	485
ArsI	GACNNNNNNTTYG	4 cut(s)	204, 236, 272, 304
AspLEI	GCGC	5 cut(s)	80, 82, 479, 545, 673
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	670
BanII	GRGCYC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	228
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	2 cut(s)	199, 412
BcnI	CCSGG	1 cut(s)	173
BfaI	CTAG	1 cut(s)	617
BfoI	RGCGCY	3 cut(s)	480, 546, 674
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	3 cut(s)	173, 199, 412
BmeT110I	CYCGRG	1 cut(s)	300
BmiI	GGNNCC	3 cut(s)	9, 610, 672
BmrFI	CCNGG	3 cut(s)	173, 199, 412
BmsI	GCATC	2 cut(s)	65, 592
BpmI	CTGGAG	1 cut(s)	595
BpuMI	CCSGG	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	152
BsaHI	GRCGYC	2 cut(s)	195, 671
BsaJI	CCNNGG	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 508, 605
Bse1I	ACTGG	1 cut(s)	612
Bse8I	GATNNNNATC	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	199, 412
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	80
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	3 cut(s)	352, 508, 605
BseNI	ACTGG	1 cut(s)	612
BsePI	GCGCGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	80, 240
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	173, 502
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	3 cut(s)	352, 508, 605
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	228, 307
Bsp143I	GATC	4 cut(s)	147, 153, 511, 646
BspACI	CCGC	3 cut(s)	5, 72, 203
BspANI	GGCC	1 cut(s)	202
BspFNI	CGCG	2 cut(s)	80, 240
BspLI	GGNNCC	3 cut(s)	9, 610, 672
BspPI	GGATC	3 cut(s)	142, 519, 641
BspQI	GCTCTTC	1 cut(s)	671
BspT107I	GGYRCC	1 cut(s)	670
BsrBI	CCGCTC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	1 cut(s)	411
BssHII	GCGCGC	1 cut(s)	78
BssMI	GATC	4 cut(s)	147, 153, 511, 646
BssNI	GRCGYC	2 cut(s)	195, 671
Bst2UI	CCWGG	2 cut(s)	199, 412
Bst4CI	ACNGT	3 cut(s)	188, 247, 267
Bst6I	CTCTTC	1 cut(s)	671
BstACI	GRCGYC	2 cut(s)	195, 671
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	80, 607
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	2 cut(s)	80, 240
BstH2I	RGCGCY	3 cut(s)	480, 546, 674
BstHHI	GCGC	5 cut(s)	80, 82, 479, 545, 673
BstKTI	GATC	4 cut(s)	150, 156, 514, 649
BstMBI	GATC	4 cut(s)	147, 153, 511, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	2 cut(s)	199, 412
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	3 cut(s)	171, 197, 410
BstUI	CGCG	2 cut(s)	80, 240
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	80, 607
CaiI	CAGNNNCTG	1 cut(s)	605
CfoI	GCGC	5 cut(s)	80, 82, 479, 545, 673
CseI	GACGC	2 cut(s)	203, 229
Csp6I	GTAC	2 cut(s)	118, 559
CviAII	CATG	2 cut(s)	278, 406
CviJI	RGCY	7 cut(s)	41, 202, 305, 325, 492, 609, 681
CviKI_1	RGCY	7 cut(s)	41, 202, 305, 325, 492, 609, 681
CviQI	GTAC	2 cut(s)	118, 559
DinI	GGCGCC	1 cut(s)	672
DpnI	GATC	4 cut(s)	149, 155, 513, 648
DpnII	GATC	4 cut(s)	147, 153, 511, 646
EaeI	YGGCCR	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	671
EarI	CTCTTC	1 cut(s)	671
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	307
Eco47III	AGCGCT	1 cut(s)	544
Eco88I	CYCGRG	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	197, 410
EcoT38I	GRGCYC	1 cut(s)	307
EgeI	GGCGCC	1 cut(s)	672
EheI	GGCGCC	1 cut(s)	672
FaeI	CATG	2 cut(s)	281, 409
FaiI	YATR	4 cut(s)	279, 387, 407, 434
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	2 cut(s)	277, 405
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	87
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	617
GlaI	GCGC	5 cut(s)	79, 81, 478, 544, 672
GluI	GCNGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	595
HaeII	RGCGCY	3 cut(s)	480, 546, 674
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	2 cut(s)	173, 502
HgaI	GACGC	2 cut(s)	203, 229
HhaI	GCGC	5 cut(s)	80, 82, 479, 545, 673
Hin1I	GRCGYC	2 cut(s)	195, 671
Hin1II	CATG	2 cut(s)	281, 409
Hin6I	GCGC	5 cut(s)	78, 80, 477, 543, 671
HinP1I	GCGC	5 cut(s)	78, 80, 477, 543, 671
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	4 cut(s)	21, 137, 143, 370
HpaII	CCGG	2 cut(s)	173, 502
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	4 cut(s)	136, 319, 439, 559
Hpy188I	TCNGA	2 cut(s)	142, 516
Hpy188III	TCNNGA	5 cut(s)	151, 367, 374, 549, 617
Hpy8I	GTNNAC	4 cut(s)	136, 319, 439, 559
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	105, 342, 541
HpyCH4III	ACNGT	3 cut(s)	188, 247, 267
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	310, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	2 cut(s)	195, 671
Hsp92II	CATG	2 cut(s)	281, 409
HspAI	GCGC	5 cut(s)	78, 80, 477, 543, 671
KasI	GGCGCC	1 cut(s)	670
Kzo9I	GATC	4 cut(s)	147, 153, 511, 646
LguI	GCTCTTC	1 cut(s)	671
LmnI	GCTCC	1 cut(s)	614
LweI	GCATC	2 cut(s)	65, 592
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	4 cut(s)	241, 292, 445, 662
MalI	GATC	4 cut(s)	149, 155, 513, 648
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	4 cut(s)	147, 153, 511, 646
MboII	GAAGA	4 cut(s)	157, 355, 688, 691
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	228, 307
MluCI	AATT	3 cut(s)	252, 485, 695
Mly113I	GGCGCC	1 cut(s)	671
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	5 cut(s)	218, 246, 269, 372, 545
MseI	TTAA	3 cut(s)	27, 44, 624
MslI	CAYNNNNRTG	2 cut(s)	282, 452
MspA1I	CMGCKG	1 cut(s)	325
MspI	CCGG	2 cut(s)	173, 502
MspR9I	CCNGG	3 cut(s)	173, 199, 412
MvaI	CCWGG	2 cut(s)	199, 412
MvnI	CGCG	2 cut(s)	80, 240
MwoI	GCNNNNNNNGC	1 cut(s)	88
NarI	GGCGCC	1 cut(s)	671
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	4 cut(s)	147, 153, 511, 646
NlaIII	CATG	2 cut(s)	281, 409
NlaIV	GGNNCC	3 cut(s)	9, 610, 672
NmuCI	GTSAC	2 cut(s)	241, 445
NspI	RCATGY	1 cut(s)	409
OliI	CACNNNNGTG	1 cut(s)	452
PauI	GCGCGC	1 cut(s)	78
PciI	ACATGT	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	671
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	21, 143, 370
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	605
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	131
PluTI	GGCGCC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	131
PscI	ACATGT	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	387
Psp1406I	AACGTT	1 cut(s)	47
Psp6I	CCWGG	2 cut(s)	197, 410
PspGI	CCWGG	2 cut(s)	197, 410
PspN4I	GGNNCC	3 cut(s)	9, 610, 672
PstNI	CAGNNNCTG	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	511
PsyI	GACNNNGTC	1 cut(s)	173
PteI	GCGCGC	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	325
RsaI	GTAC	2 cut(s)	119, 560
RsaNI	GTAC	2 cut(s)	118, 559
RseI	CAYNNNNRTG	2 cut(s)	282, 452
SapI	GCTCTTC	1 cut(s)	671
SaqAI	TTAA	3 cut(s)	27, 44, 624
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	4 cut(s)	147, 153, 511, 646
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	3 cut(s)	173, 199, 412
SduI	GDGCHC	2 cut(s)	228, 307
SetI	ASST	7 cut(s)	43, 50, 261, 327, 334, 383, 571
SfaNI	GCATC	2 cut(s)	65, 592
SfoI	GGCGCC	1 cut(s)	672
SmiMI	CAYNNNNRTG	2 cut(s)	282, 452
Sse9I	AATT	3 cut(s)	252, 485, 695
SsiI	CCGC	3 cut(s)	5, 72, 203
SspDI	GGCGCC	1 cut(s)	670
SspMI	CTAG	1 cut(s)	617
StyD4I	CCNGG	3 cut(s)	171, 197, 410
TaaI	ACNGT	3 cut(s)	188, 247, 267
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	5 cut(s)	33, 146, 156, 168, 222
TasI	AATT	3 cut(s)	252, 485, 695
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	3 cut(s)	21, 143, 370
Tru1I	TTAA	3 cut(s)	27, 44, 624
Tru9I	TTAA	3 cut(s)	27, 44, 624
TseFI	GTSAC	2 cut(s)	241, 445
Tsp45I	GTSAC	2 cut(s)	241, 445
TspGWI	ACGGA	4 cut(s)	135, 524, 576, 639
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	605
XapI	RAATTY	1 cut(s)	485
XbaI	TCTAGA	1 cut(s)	616
XceI	RCATGY	1 cut(s)	409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	354
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.