Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009565

Physical Location & Seq

Genomic Coordinates Forward (+)

33239657 .. 33241570

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G360400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCAGGAAGGAAAGCACAGAATCCTTATGTTATTACAAACAGCTTGGGTGTTGTTGGTGGTCTTTGTTTTGAAGGGATGTGCACAAAACTTACCCCCTGCAAAATACGATGGGTTCGTGTACGACCATCACCTAGTTGACTCGGATTCGATCCTGATTGAAGCGTTCTTCGACCCGGTGTGCCCAGACAGTAGGGACGCCTGGCCACCCCTCAAAAAAGCCCTCCAGCACTACTCTCCTCGCGTTTCGGTGGTGGTTCACCTGTTACCGTTACCTTACCATGACAATGCTTTTGTTAGTTCTCGTGTACTACACATCGTAAATCAGCTGAACACTTCTGCTACATTCCCATTGTTGGAGTGGTTCTTCAAGAATCAGGAGAAGTATTATAATGTTCAAACTCGCAACCTTTCCAGAGTTGCAGTTGCAAATGACATTGTCAACTCTGTCACAGAAGTAGTTGGGAACTCCTATCATAGTGACCTTGAATCCGGCCTCAATGACCGGAAAACGGATCTCAAAACAAGGGTTTCCTTCAAGTATAGCGCTTCAAGAGGGGTGTATGCAACGCCTACTTTCTTTCTTAATGGATTTGTATTGCCTGATGCTGGCTCCCCTACAGATTTTAATGGATGGAAAAAAATCATTGACCCATTAATTGGTAATGAGGCGCCAAAGAACCAGGAAAATCTGCACTTCTTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin_4

Protein Analysis

236

Amino Acids

26.68

Weight (kDa)

6.75

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20225 AT1G76020 AT1G76020 AT1G76020
fragaria_vesca	FvH4_2g38030
malus_domestica	MD08G1008700.v1.1 MD15G1007500.v1.1
prunus_persica	Prupe.1G360400_v2.0.a1 Prupe.1G360400_v2.0.a1
pyrus_communis	pycom08g00690 pycom15g00600
rosa_chinensis	RchiOBHm_Chr6g0303571
rosa_laevigata	RLG00000011072
rosa_multiflora	Rmu_sc0007957.1_g000001 Rmu_ssc0000388.1_g000044
rosa_roxburghii	Rroxscaffold_7G00164620
rosa_rugosa	Rorug06G0322400
rosa_samantha	Rh6AG436900 Rh6BG466500 Rh6CG448800 Rh6DG435600
rosa_wichuraiana	Rw6G037810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AccB1I	GGYRCC	1 cut(s)	670
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccII	CGCG	1 cut(s)	243
AclWI	GGATC	2 cut(s)	145, 522
AcoI	YGGCCR	1 cut(s)	203
AcyI	GRCGYC	2 cut(s)	198, 671
AfaI	GTAC	2 cut(s)	122, 309
AfeI	AGCGCT	1 cut(s)	547
AfiI	CCNNNNNNNGG	4 cut(s)	355, 511, 608, 659
AgsI	TTSAA	7 cut(s)	73, 161, 370, 398, 488, 538, 552
AjnI	CCWGG	2 cut(s)	200, 681
AluBI	AGCT	2 cut(s)	44, 328
AluI	AGCT	2 cut(s)	44, 328
Alw21I	GWGCWC	1 cut(s)	85
Alw44I	GTGCAC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	145, 522
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	2 cut(s)	203, 493
ApaLI	GTGCAC	1 cut(s)	81
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AseI	ATTAAT	1 cut(s)	656
AspLEI	GCGC	2 cut(s)	548, 673
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	122, 251
BaeGI	GKGCMC	2 cut(s)	85, 185
BalI	TGGCCA	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	670
BauI	CACGAG	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	85
BccI	CCATC	3 cut(s)	104, 135, 627
BciT130I	CCWGG	2 cut(s)	202, 683
BcnI	CCSGG	1 cut(s)	176
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	2 cut(s)	549, 674
Bme1390I	CCNGG	3 cut(s)	176, 202, 683
BmiI	GGNNCC	2 cut(s)	613, 672
BmrFI	CCNGG	3 cut(s)	176, 202, 683
BmsI	GCATC	1 cut(s)	595
BpmI	CTGGAG	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	176
BsaHI	GRCGYC	2 cut(s)	198, 671
BsaWI	WCCGGW	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	4 cut(s)	355, 511, 608, 659
BseBI	CCWGG	2 cut(s)	202, 683
BseGI	GGATG	2 cut(s)	83, 638
BseLI	CCNNNNNNNGG	4 cut(s)	355, 511, 608, 659
BseRI	GAGGAG	1 cut(s)	228
BseSI	GKGCMC	2 cut(s)	85, 185
BsgI	GTGCAG	1 cut(s)	677
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	205, 495
BshNI	GGYRCC	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	3 cut(s)	176, 492, 505
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	4 cut(s)	355, 511, 608, 659
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	205, 495
Bsp1286I	GDGCHC	2 cut(s)	85, 185
Bsp143I	GATC	2 cut(s)	150, 514
BspANI	GGCC	2 cut(s)	205, 495
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	613, 672
BspPI	GGATC	2 cut(s)	145, 522
BspT107I	GGYRCC	1 cut(s)	670
BssMI	GATC	2 cut(s)	150, 514
BssNI	GRCGYC	2 cut(s)	198, 671
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	2 cut(s)	202, 683
Bst4CI	ACNGT	2 cut(s)	191, 270
BstACI	GRCGYC	2 cut(s)	198, 671
BstC8I	GCNNGC	1 cut(s)	610
BstF5I	GGATG	2 cut(s)	83, 638
BstFNI	CGCG	1 cut(s)	243
BstH2I	RGCGCY	2 cut(s)	549, 674
BstHHI	GCGC	2 cut(s)	548, 673
BstKTI	GATC	2 cut(s)	153, 517
BstMBI	GATC	2 cut(s)	150, 514
BstNI	CCWGG	2 cut(s)	202, 683
BstSCI	CCNGG	3 cut(s)	174, 200, 681
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	2 cut(s)	85, 185
BstUI	CGCG	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	205, 495
BtsCI	GGATG	2 cut(s)	83, 638
Cac8I	GCNNGC	1 cut(s)	610
CfoI	GCGC	2 cut(s)	548, 673
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	121, 308
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	6 cut(s)	44, 205, 221, 328, 495, 612
CviKI_1	RGCY	6 cut(s)	44, 205, 221, 328, 495, 612
CviQI	GTAC	2 cut(s)	121, 308
DinI	GGCGCC	1 cut(s)	672
DpnI	GATC	2 cut(s)	152, 516
DpnII	GATC	2 cut(s)	150, 514
EaeI	YGGCCR	1 cut(s)	203
Eco47III	AGCGCT	1 cut(s)	547
EcoRII	CCWGG	2 cut(s)	200, 681
EgeI	GGCGCC	1 cut(s)	672
EheI	GGCGCC	1 cut(s)	672
FaeI	CATG	1 cut(s)	284
FaiI	YATR	6 cut(s)	29, 282, 390, 477, 543, 564
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	280
FokI	GGATG	2 cut(s)	90, 645
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	2 cut(s)	547, 672
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	2 cut(s)	549, 674
HaeIII	GGCC	2 cut(s)	205, 495
HapII	CCGG	3 cut(s)	176, 492, 505
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	2 cut(s)	548, 673
Hin1I	GRCGYC	2 cut(s)	198, 671
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	2 cut(s)	546, 671
HinP1I	GCGC	2 cut(s)	546, 671
HincII	GTYRAC	2 cut(s)	139, 442
HindII	GTYRAC	2 cut(s)	139, 442
HinfI	GANTC	5 cut(s)	21, 140, 146, 373, 488
HpaII	CCGG	3 cut(s)	176, 492, 505
HphI	GGTGA	2 cut(s)	122, 251
Hpy166II	GTNNAC	6 cut(s)	83, 121, 139, 259, 308, 442
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	5 cut(s)	154, 370, 377, 414, 552
Hpy8I	GTNNAC	6 cut(s)	83, 121, 139, 259, 308, 442
HpyAV	CCTTC	2 cut(s)	67, 544
HpyCH4III	ACNGT	2 cut(s)	191, 270
HpyCH4V	TGCA	7 cut(s)	4, 83, 101, 422, 428, 566, 694
Hsp92I	GRCGYC	2 cut(s)	198, 671
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	2 cut(s)	546, 671
KasI	GGCGCC	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	150, 514
LmnI	GCTCC	1 cut(s)	617
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	4 cut(s)	264, 270, 448, 479
MalI	GATC	2 cut(s)	152, 516
MboI	GATC	2 cut(s)	150, 514
MboII	GAAGA	3 cut(s)	160, 358, 691
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	2 cut(s)	85, 185
MlsI	TGGCCA	1 cut(s)	205
MluCI	AATT	1 cut(s)	657
MluNI	TGGCCA	1 cut(s)	205
Mly113I	GGCGCC	1 cut(s)	671
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	6 cut(s)	221, 233, 249, 506, 548, 661
Mox20I	TGGCCA	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	205
MseI	TTAA	3 cut(s)	585, 627, 656
MslI	CAYNNNNRTG	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	205
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	3 cut(s)	176, 492, 505
MspR9I	CCNGG	3 cut(s)	176, 202, 683
MvaI	CCWGG	2 cut(s)	202, 683
MvnI	CGCG	1 cut(s)	243
NarI	GGCGCC	1 cut(s)	671
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	2 cut(s)	150, 514
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	613, 672
NmuCI	GTSAC	2 cut(s)	448, 479
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	4 cut(s)	21, 146, 373, 488
PflFI	GACNNNGTC	1 cut(s)	437
PflMI	CCANNNNNTGG	1 cut(s)	659
PleI	GAGTC	1 cut(s)	134
PluTI	GGCGCC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	134
PshBI	ATTAAT	1 cut(s)	656
PsiI	TTATAA	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	200, 681
PspGI	CCWGG	2 cut(s)	200, 681
PspN4I	GGNNCC	2 cut(s)	613, 672
PsuI	RGATCY	1 cut(s)	514
PsyI	GACNNNGTC	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	122, 309
RsaNI	GTAC	2 cut(s)	121, 308
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	585, 627, 656
Sau3AI	GATC	2 cut(s)	150, 514
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	3 cut(s)	176, 202, 683
SduI	GDGCHC	2 cut(s)	85, 185
SetI	ASST	7 cut(s)	46, 135, 264, 277, 330, 411, 486
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	618
SfoI	GGCGCC	1 cut(s)	672
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	1 cut(s)	657
SspDI	GGCGCC	1 cut(s)	670
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	3 cut(s)	174, 200, 681
TaaI	ACNGT	2 cut(s)	191, 270
TaqI	TCGA	2 cut(s)	149, 171
TasI	AATT	1 cut(s)	657
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	4 cut(s)	21, 146, 373, 488
Tru1I	TTAA	3 cut(s)	585, 627, 656
Tru9I	TTAA	3 cut(s)	585, 627, 656
TseFI	GTSAC	2 cut(s)	448, 479
Tsp45I	GTSAC	2 cut(s)	448, 479
TspGWI	ACGGA	1 cut(s)	527
Tth111I	GACNNNGTC	1 cut(s)	437
Van91I	CCANNNNNTGG	1 cut(s)	659
VneI	GTGCAC	1 cut(s)	81
VspI	ATTAAT	1 cut(s)	656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	357
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.