Rh6BG466500

Thioredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009565
Physical Location & Seq
Forward (+)
67511254 .. 67513243
1990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG466500.1

Sequence Viewer

Length: 624 bp
ATGGAGGAAGCAAAGCACAAAATCGTCATAGTACAAACCGCTTTGCTGTTGCTGTTGGTTTTGGTTTTAAATGGGTATGCACAGAACTTGCCCCCTGCCAAGTACGATGGGTTCTTGTACGAGCATCGCCTAATTGACCCGGATTCGATTCTCATCGAAGCTTTCTTTGACCCGGTCTGCCCGGACAGTAGAGATTCCTGGCCACCCCTCAAACAGGCCCTAGCCTACTACGGCCCTCACGTCACTCTTGCTGTGCACCTATTACCGTTGCCTTACCATGACAACGCTTTTGTTGCTTCTCGTGCTATACACATTGTAAATAAGCTGAAACCTTCTGCTACGTTTTCCGTGTTGGAGTGGTTCTTCAAGAATCAGGAGAGGTATTACAATGCTCAAACGCGCAACATTTCTAGGGCTTCCATTGTGGATGACTTAGTGAAGCAACTAACAGCAGTACTTGGGAATTCTTATCATAGTTCCCTGGAATCAGGCTTTAATGACCGGAAAACTGATCTCACAACAAGGGTTTCCTTTAAGGTAATGTGCATTGTTTTACACATGCTTCAATTACTTCTAGGCTGGCCATATAAATTGCATTCTATCACACAATCTTTTGTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thioredoxin_4

Protein Analysis

207

Amino Acids

23.62

Weight (kDa)

7.82

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 400
AciI CCGC 1 cut(s) 39
AcoI YGGCCR 2 cut(s) 200, 581
AcsI RAATTY 1 cut(s) 463
AfaI GTAC 4 cut(s) 33, 104, 119, 456
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 2 cut(s) 367, 566
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 2 cut(s) 197, 480
AluBI AGCT 2 cut(s) 161, 325
AluI AGCT 2 cut(s) 161, 325
Alw21I GWGCWC 1 cut(s) 258
Alw44I GTGCAC 1 cut(s) 254
AoxI GGCC 4 cut(s) 200, 216, 232, 581
ApaLI GTGCAC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 463
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AspLEI GCGC 1 cut(s) 402
AspS9I GGNCC 2 cut(s) 217, 233
AsuC2I CCSGG 3 cut(s) 140, 173, 182
BaeGI GKGCMC 1 cut(s) 258
BalI TGGCCA 2 cut(s) 202, 583
BauI CACGAG 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 258
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 247
BciT130I CCWGG 2 cut(s) 199, 482
BcnI CCSGG 3 cut(s) 140, 173, 182
BfaI CTAG 3 cut(s) 221, 411, 575
BmcAI AGTACT 1 cut(s) 456
Bme1390I CCNGG 5 cut(s) 140, 173, 182, 199, 482
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 217, 233
BmrFI CCNGG 5 cut(s) 140, 173, 182, 199, 482
BmsI GCATC 1 cut(s) 133
BpuMI CCSGG 3 cut(s) 140, 173, 182
BsaBI GATNNNNATC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 480
BsaWI WCCGGW 1 cut(s) 501
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 152
BseBI CCWGG 2 cut(s) 199, 482
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 433
BseJI GATNNNNATC 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 400
BshFI GGCC 4 cut(s) 202, 218, 234, 583
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 4 cut(s) 140, 173, 182, 502
BslI CCNNNNNNNGG 1 cut(s) 214
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 4 cut(s) 202, 218, 234, 583
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 511
BspACI CCGC 1 cut(s) 39
BspANI GGCC 4 cut(s) 202, 218, 234, 583
BspFNI CGCG 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 1 cut(s) 511
BssSI CACGAG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 199, 482
Bst4CI ACNGT 2 cut(s) 188, 267
BstC8I GCNNGC 1 cut(s) 581
BstDEI CTNAG 1 cut(s) 433
BstENI CCTNNNNNAGG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 433
BstFNI CGCG 1 cut(s) 400
BstHHI GCGC 1 cut(s) 402
BstKTI GATC 1 cut(s) 514
BstMBI GATC 1 cut(s) 511
BstMWI GCNNNNNNNGC 2 cut(s) 293, 302
BstNI CCWGG 2 cut(s) 199, 482
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 5 cut(s) 138, 171, 180, 197, 480
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 1 cut(s) 400
BsuRI GGCC 4 cut(s) 202, 218, 234, 583
BtgZI GCGATG 1 cut(s) 110
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 433
Cac8I GCNNGC 1 cut(s) 581
CfoI GCGC 1 cut(s) 402
Cfr13I GGNCC 2 cut(s) 217, 233
Csp6I GTAC 4 cut(s) 32, 103, 118, 455
CviAII CATG 2 cut(s) 278, 559
CviQI GTAC 4 cut(s) 32, 103, 118, 455
DdeI CTNAG 1 cut(s) 433
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
DraI TTTAAA 1 cut(s) 69
EaeI YGGCCR 2 cut(s) 200, 581
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 197, 480
FaeI CATG 2 cut(s) 281, 562
FaiI YATR 8 cut(s) 29, 78, 279, 308, 474, 560, 586, 588
FatI CATG 2 cut(s) 277, 558
FokI GGATG 1 cut(s) 440
FspBI CTAG 3 cut(s) 221, 411, 575
GlaI GCGC 1 cut(s) 401
HaeIII GGCC 4 cut(s) 202, 218, 234, 583
HapII CCGG 4 cut(s) 140, 173, 182, 502
HhaI GCGC 1 cut(s) 402
Hin1II CATG 2 cut(s) 281, 562
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 5 cut(s) 143, 148, 194, 370, 485
HpaII CCGG 4 cut(s) 140, 173, 182, 502
Hpy166II GTNNAC 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 367, 374
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 2 cut(s) 188, 267
HpyCH4IV ACGT 2 cut(s) 240, 341
HpyCH4V TGCA 4 cut(s) 80, 256, 546, 595
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 302
HpyF3I CTNAG 1 cut(s) 433
HpySE526I ACGT 2 cut(s) 240, 341
Hsp92II CATG 2 cut(s) 281, 562
HspAI GCGC 1 cut(s) 400
Kzo9I GATC 1 cut(s) 511
LweI GCATC 1 cut(s) 133
MaeI CTAG 3 cut(s) 221, 411, 575
MaeII ACGT 2 cut(s) 240, 341
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 513
MboI GATC 1 cut(s) 511
MboII GAAGA 1 cut(s) 355
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 2 cut(s) 202, 583
MluCI AATT 4 cut(s) 132, 463, 566, 590
MluNI TGGCCA 2 cut(s) 202, 583
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 3 cut(s) 218, 246, 372
Mox20I TGGCCA 2 cut(s) 202, 583
MscI TGGCCA 2 cut(s) 202, 583
MseI TTAA 3 cut(s) 68, 495, 534
Msp20I TGGCCA 2 cut(s) 202, 583
MspI CCGG 4 cut(s) 140, 173, 182, 502
MspR9I CCNGG 5 cut(s) 140, 173, 182, 199, 482
Mva1269I GAATGC 1 cut(s) 595
MvaI CCWGG 2 cut(s) 199, 482
MvnI CGCG 1 cut(s) 400
MwoI GCNNNNNNNGC 2 cut(s) 293, 302
NciI CCSGG 3 cut(s) 140, 173, 182
NdeII GATC 1 cut(s) 511
NlaIII CATG 2 cut(s) 281, 562
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PctI GAATGC 1 cut(s) 595
PfeI GAWTC 5 cut(s) 143, 148, 194, 370, 485
PflFI GACNNNGTC 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 197, 480
PspGI CCWGG 2 cut(s) 197, 480
PspPI GGNCC 2 cut(s) 217, 233
PsrI GAACNNNNNNTAC 2 cut(s) 95, 127
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 4 cut(s) 33, 104, 119, 456
RsaNI GTAC 4 cut(s) 32, 103, 118, 455
SaqAI TTAA 3 cut(s) 68, 495, 534
Sau3AI GATC 1 cut(s) 511
Sau96I GGNCC 2 cut(s) 217, 233
ScaI AGTACT 1 cut(s) 456
ScrFI CCNGG 5 cut(s) 140, 173, 182, 199, 482
SduI GDGCHC 1 cut(s) 258
SetI ASST 8 cut(s) 163, 243, 261, 327, 334, 344, 383, 540
SfaNI GCATC 1 cut(s) 133
Sse9I AATT 4 cut(s) 132, 463, 566, 590
SsiI CCGC 1 cut(s) 39
SspMI CTAG 3 cut(s) 221, 411, 575
StyD4I CCNGG 5 cut(s) 138, 171, 180, 197, 480
TaaI ACNGT 2 cut(s) 188, 267
TaiI ACGT 2 cut(s) 243, 344
TaqI TCGA 2 cut(s) 146, 156
TasI AATT 4 cut(s) 132, 463, 566, 590
TatI WGTACW 2 cut(s) 31, 454
TfiI GAWTC 5 cut(s) 143, 148, 194, 370, 485
Tru1I TTAA 3 cut(s) 68, 495, 534
Tru9I TTAA 3 cut(s) 68, 495, 534
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspGWI ACGGA 1 cut(s) 337
Tth111I GACNNNGTC 1 cut(s) 173
VneI GTGCAC 1 cut(s) 254
XagI CCTNNNNNAGG 1 cut(s) 212
XapI RAATTY 1 cut(s) 463
XceI RCATGY 1 cut(s) 562
XspI CTAG 3 cut(s) 221, 411, 575
ZrmI AGTACT 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.