Rmu_sc0007957.1_g000001

Thioredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007957.1
OG0009565
Physical Location & Seq
Reverse (-)
3933 .. 5464
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007957.1_g000001.1.cds

Sequence Viewer

Length: 648 bp
ctgttggttttggttttaaatgggtatgcacagaacttgccccctgccaagtacgatgggttcttgtacgagcatcgcctgattgacccggattcgattctcatcgaagctttctttgacccggtctgcccggacagtagagattcctggccacccctcaaacaggccctagcctactacggccctcacgtcagtcttgctgtgcacctattaccgttgccttaccatgacaacgcttttgttgcttctcgtgctatacacattgtaaataagctgaaacctactgctacgttttccgtgttggagtggttcttcaagaatcaggagaggtattacaatgctcaaacgcgcaacatttctagggcttccattgtggatgacttagtgaagcaactaacagcagtacttgggaactcttatcatagttccctggaatcaggctttaatgaccggaaaactgatctcacaacaagggtttcctttaagtatagtacttcaagaggggtgtatggaacgcctactttctatgtaaatggatttgtattgcctgattctggtgatgctctagattttaacgggtggaaaaaagtgattgacccattagttacggcaccaaagaaacaggaaaatttgcatttcttcttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thioredoxin_4

Protein Analysis

215

Amino Acids

24.37

Weight (kDa)

7.22

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 646
AccB1I GGYRCC 1 cut(s) 610
AccII CGCG 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 149
AcsI RAATTY 1 cut(s) 628
AfaI GTAC 4 cut(s) 53, 68, 405, 493
AfiI CCNNNNNNNGG 2 cut(s) 163, 554
AgsI TTSAA 2 cut(s) 316, 498
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 2 cut(s) 146, 429
AluBI AGCT 2 cut(s) 110, 274
AluI AGCT 2 cut(s) 110, 274
Alw21I GWGCWC 1 cut(s) 207
Alw44I GTGCAC 1 cut(s) 203
AoxI GGCC 3 cut(s) 149, 165, 181
ApaLI GTGCAC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 628
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 2 cut(s) 166, 182
AsuC2I CCSGG 3 cut(s) 89, 122, 131
AsuHPI GGTGA 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 207
BalI TGGCCA 1 cut(s) 151
BanI GGYRCC 1 cut(s) 610
BauI CACGAG 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 207
BccI CCATC 1 cut(s) 50
BceAI ACGGC 2 cut(s) 196, 624
BciT130I CCWGG 2 cut(s) 148, 431
BcnI CCSGG 3 cut(s) 89, 122, 131
BfaI CTAG 3 cut(s) 170, 360, 566
BmcAI AGTACT 2 cut(s) 405, 493
Bme1390I CCNGG 5 cut(s) 89, 122, 131, 148, 431
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 166, 182
BmiI GGNNCC 1 cut(s) 612
BmrFI CCNGG 5 cut(s) 89, 122, 131, 148, 431
BmsI GCATC 2 cut(s) 82, 550
BpuMI CCSGG 3 cut(s) 89, 122, 131
BsaBI GATNNNNATC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 429
BsaWI WCCGGW 1 cut(s) 450
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 554
Bse8I GATNNNNATC 1 cut(s) 101
BseBI CCWGG 2 cut(s) 148, 431
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 1 cut(s) 382
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 2 cut(s) 163, 554
BseSI GKGCMC 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 349
BshFI GGCC 3 cut(s) 151, 167, 183
BshNI GGYRCC 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 4 cut(s) 89, 122, 131, 451
BslI CCNNNNNNNGG 2 cut(s) 163, 554
BsnI GGCC 3 cut(s) 151, 167, 183
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 460
BspANI GGCC 3 cut(s) 151, 167, 183
BspFNI CGCG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 610
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 1 cut(s) 460
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst2UI CCWGG 2 cut(s) 148, 431
Bst4CI ACNGT 2 cut(s) 137, 216
BstDEI CTNAG 1 cut(s) 382
BstENI CCTNNNNNAGG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 349
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 1 cut(s) 463
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 2 cut(s) 242, 251
BstNI CCWGG 2 cut(s) 148, 431
BstSCI CCNGG 5 cut(s) 87, 120, 129, 146, 429
BstSLI GKGCMC 1 cut(s) 207
BstUI CGCG 1 cut(s) 349
BsuRI GGCC 3 cut(s) 151, 167, 183
BtgZI GCGATG 1 cut(s) 59
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 382
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 2 cut(s) 166, 182
Csp6I GTAC 4 cut(s) 52, 67, 404, 492
CviAII CATG 1 cut(s) 227
CviJI RGCY 8 cut(s) 110, 151, 167, 173, 183, 274, 365, 441
CviKI_1 RGCY 8 cut(s) 110, 151, 167, 173, 183, 274, 365, 441
CviQI GTAC 4 cut(s) 52, 67, 404, 492
DdeI CTNAG 1 cut(s) 382
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
DraI TTTAAA 1 cut(s) 18
EaeI YGGCCR 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 146, 429
FaeI CATG 1 cut(s) 230
FaiI YATR 8 cut(s) 27, 228, 257, 423, 489, 510, 528, 646
FatI CATG 1 cut(s) 226
FokI GGATG 1 cut(s) 389
FspBI CTAG 3 cut(s) 170, 360, 566
GlaI GCGC 1 cut(s) 350
HaeIII GGCC 3 cut(s) 151, 167, 183
HapII CCGG 4 cut(s) 89, 122, 131, 451
HhaI GCGC 1 cut(s) 351
Hin1II CATG 1 cut(s) 230
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 108
HinfI GANTC 6 cut(s) 92, 97, 143, 319, 434, 551
HpaII CCGG 4 cut(s) 89, 122, 131, 451
HphI GGTGA 1 cut(s) 569
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 4 cut(s) 316, 323, 498, 566
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4III ACNGT 2 cut(s) 137, 216
HpyCH4IV ACGT 2 cut(s) 189, 290
HpyCH4V TGCA 3 cut(s) 29, 205, 634
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 251
HpyF3I CTNAG 1 cut(s) 382
HpySE526I ACGT 2 cut(s) 189, 290
Hsp92II CATG 1 cut(s) 230
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 1 cut(s) 460
LweI GCATC 2 cut(s) 82, 550
MaeI CTAG 3 cut(s) 170, 360, 566
MaeII ACGT 2 cut(s) 189, 290
MaeIII GTNAC 1 cut(s) 604
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 2 cut(s) 304, 631
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 151
MluCI AATT 1 cut(s) 628
MluNI TGGCCA 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 4 cut(s) 167, 195, 321, 494
Mox20I TGGCCA 1 cut(s) 151
MscI TGGCCA 1 cut(s) 151
MseI TTAA 4 cut(s) 17, 444, 483, 573
Msp20I TGGCCA 1 cut(s) 151
MspI CCGG 4 cut(s) 89, 122, 131, 451
MspR9I CCNGG 5 cut(s) 89, 122, 131, 148, 431
MvaI CCWGG 2 cut(s) 148, 431
MvnI CGCG 1 cut(s) 349
MwoI GCNNNNNNNGC 2 cut(s) 242, 251
NciI CCSGG 3 cut(s) 89, 122, 131
NdeII GATC 1 cut(s) 460
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 6 cut(s) 92, 97, 143, 319, 434, 551
PflFI GACNNNGTC 1 cut(s) 122
PsiI TTATAA 1 cut(s) 646
Psp6I CCWGG 2 cut(s) 146, 429
PspGI CCWGG 2 cut(s) 146, 429
PspN4I GGNNCC 1 cut(s) 612
PspPI GGNCC 2 cut(s) 166, 182
PsrI GAACNNNNNNTAC 2 cut(s) 44, 76
PsyI GACNNNGTC 1 cut(s) 122
RsaI GTAC 4 cut(s) 53, 68, 405, 493
RsaNI GTAC 4 cut(s) 52, 67, 404, 492
SaqAI TTAA 4 cut(s) 17, 444, 483, 573
Sau3AI GATC 1 cut(s) 460
Sau96I GGNCC 2 cut(s) 166, 182
ScaI AGTACT 2 cut(s) 405, 493
ScrFI CCNGG 5 cut(s) 89, 122, 131, 148, 431
SduI GDGCHC 1 cut(s) 207
SetI ASST 7 cut(s) 112, 192, 210, 276, 283, 293, 332
SfaNI GCATC 2 cut(s) 82, 550
Sse9I AATT 1 cut(s) 628
SspMI CTAG 3 cut(s) 170, 360, 566
StyD4I CCNGG 5 cut(s) 87, 120, 129, 146, 429
TaaI ACNGT 2 cut(s) 137, 216
TaiI ACGT 2 cut(s) 192, 293
TaqI TCGA 2 cut(s) 95, 105
TasI AATT 1 cut(s) 628
TatI WGTACW 2 cut(s) 403, 491
TfiI GAWTC 6 cut(s) 92, 97, 143, 319, 434, 551
Tru1I TTAA 4 cut(s) 17, 444, 483, 573
Tru9I TTAA 4 cut(s) 17, 444, 483, 573
TspGWI ACGGA 1 cut(s) 286
Tth111I GACNNNGTC 1 cut(s) 122
VneI GTGCAC 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 161
XapI RAATTY 1 cut(s) 628
XbaI TCTAGA 1 cut(s) 565
XspI CTAG 3 cut(s) 170, 360, 566
ZrmI AGTACT 2 cut(s) 405, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.