AT1G76120

Pseudouridine synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
28558630 .. 28560473
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76120.1

Sequence Viewer

Length: 1392 bp
ATGTTGACAACTACCACCGATGAGGAAATAGACTTGTCCTGCGACGGAGGTGTCACGGAGCCTCAAAAAGTTGCTATAATCTTCGCGTTTTGTGGTGTAGGATACCAAGGAATGCAAAAGAATCCCGGCGCGAAAACCATTGAAGGCGAGCTCGAAGAAGCTTTGTTTCATGCCGGAGCTGTACCGGAGTCCATTAGAGGCAAGCCAAAACTATACGATTTCGCACGATCTGCACGGACAGATAAAGGAGTTAGTGCTGTTGGACAAGTAGTTTCAGGTCGCTTTATCGTTGATCCACTTGGATTCGTGAATCGTCTCAATTCAAATCTCCCTAATCAGATTAGAATCTTCGGTTACAAGCATGTAACGCCGTCGTTTAGCTCCAAGAAGTTTTGCGATCGAAGAAGGTATGTGTATCTGCTTCCAGTGTTTGCTCTTGATCCAATCTCGCATCGTGATAGAGAAACAGTAATGGCTAGTTTGGGTCCGGGAGAGGAATATGTTAAGTGCTTTGAGTGCTCAGAGAGAGGTCGTAAGATTCCTCCAGGTCTTGTGGGTAAATGGAAAGGTACCAACTTTGGGACTAAATCATTGGATTTTCAGTCAGACATTTCGTCGAACAACTCTAGTGCATTAAGAAGTGACATCAAGATTGAAGCTTTGAGTTCTAATTTAGCTGGCTTATGCTCAGTAGATGTTGAAGTAGGTAGGATACAAGAAGACAGTTGTAAATTGAATACAAATTCATCAGAGACTAAGGTAAAGAGCAAGTTTTGTTATGGTGAAAAGGAAAAGGAAAGGTTCAGTAGAATACTAAGTTGTTATGTTGGATCATATAATTTCCATAACTTCACTACAAGAACAAAAGCAGATGATCCGACTGCGAATCGTCAAATCATCTCCTTCACTGCTAATACTGTGATTAATCTTGATGGGATTGACTTTATCAAGTGTGAAGTCTTAGGCAAAAGCTTTATGCTTCATCAGATTCGGAAGATGATGGGTCTTGCTGTTGCAATCATGCGGAATTGTGCTTCTGAATCACTTATCCAAAGTGCTTTCAGCAAGGATGTGAATATAACTGTACCAATGGCGCCAGAAGTTGGACTTTATCTGGACGAATGCTTCTTCACGTCTTATAACAGAAACTTTGAAGACAGTCATGAAGAAGTGTCCATGGAAGCATACAAAGAAGAAGCTGAAGCATTCAAATTGAAGCATATCTATTCTCATATCGGCGCTACAGAGCGAAAATACGGAAATATGGCTCTTTGGTTACATTCCTTGAACTATAGAAACTATCCAGACCTAAACTTTGGCAGCTGTGGACAAAACACAGACCAAGTTCTTGTTCATAAGAAAATTGATGAAAGAGCAAGTCATAGTCTCTAA

Protein Analysis

463

Amino Acids

51.78

Weight (kDa)

7.13

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PseudoU_synth_1 PF01416 275 - 377 2.4e-11 tRNA pseudouridine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1140
AasI GACNNNNNNGTC 1 cut(s) 50
Acc65I GGTACC 1 cut(s) 569
AccB1I GGYRCC 2 cut(s) 569, 1093
AccB7I CCANNNNNTGG 1 cut(s) 1103
AccII CGCG 2 cut(s) 86, 131
AciI CCGC 1 cut(s) 1024
AclWI GGATC 4 cut(s) 287, 434, 838, 869
AcsI RAATTY 1 cut(s) 742
AcuI CTGAAG 1 cut(s) 1221
AcyI GRCGYC 1 cut(s) 1094
AfaI GTAC 3 cut(s) 183, 571, 1086
AfiI CCNNNNNNNGG 2 cut(s) 579, 1103
AgsI TTSAA 9 cut(s) 143, 324, 656, 701, 736, 1154, 1210, 1216, 1288
AhdI GACNNNNNGTC 1 cut(s) 613
AjiI CACGTC 1 cut(s) 1134
AjnI CCWGG 1 cut(s) 544
AjuI GAANNNNNNNTTGG 2 cut(s) 1335, 1367
AluBI AGCT 9 cut(s) 151, 161, 179, 381, 659, 677, 972, 1199, 1323
AluI AGCT 9 cut(s) 151, 161, 179, 381, 659, 677, 972, 1199, 1323
Alw21I GWGCWC 2 cut(s) 153, 521
Alw26I GTCTC 2 cut(s) 320, 746
AlwI GGATC 4 cut(s) 287, 434, 838, 869
ApeKI GCWGC 1 cut(s) 1320
ApoI RAATTY 1 cut(s) 742
ArsI GACNNNNNNTTYG 2 cut(s) 1298, 1330
AseI ATTAAT 1 cut(s) 924
Asp718I GGTACC 1 cut(s) 569
AspLEI GCGC 3 cut(s) 131, 1096, 1241
AspS9I GGNCC 1 cut(s) 485
AsuC2I CCSGG 2 cut(s) 126, 489
AsuHPI GGTGA 1 cut(s) 794
AvaII GGWCC 1 cut(s) 485
BanI GGYRCC 2 cut(s) 569, 1093
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 726, 1161
Bbv12I GWGCWC 2 cut(s) 153, 521
BbvI GCAGC 1 cut(s) 1332
BccI CCATC 2 cut(s) 926, 994
BceAI ACGGC 1 cut(s) 355
BciT130I CCWGG 1 cut(s) 546
BciVI GTATCC 2 cut(s) 95, 705
BcnI CCSGG 2 cut(s) 126, 489
BcoDI GTCTC 2 cut(s) 320, 746
BfaI CTAG 2 cut(s) 477, 627
BfmI CTRYAG 2 cut(s) 1242, 1291
BfoI RGCGCY 2 cut(s) 1097, 1242
BfuI GTATCC 2 cut(s) 95, 705
BisI GCNGC 1 cut(s) 1321
BlsI GCNGC 1 cut(s) 1322
Bme1390I CCNGG 3 cut(s) 126, 489, 546
Bme18I GGWCC 1 cut(s) 485
BmeRI GACNNNNNGTC 1 cut(s) 613
BmgBI CACGTC 1 cut(s) 1134
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 4 cut(s) 60, 486, 571, 1095
BmrFI CCNGG 3 cut(s) 126, 489, 546
BmsI GCATC 1 cut(s) 460
BpiI GAAGAC 2 cut(s) 726, 1161
BpmI CTGGAG 1 cut(s) 528
BpuMI CCSGG 2 cut(s) 126, 489
BsaBI GATNNNNATC 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 1094
BsaJI CCNNGG 2 cut(s) 106, 1176
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 579, 1103
Bse1I ACTGG 1 cut(s) 425
Bse8I GATNNNNATC 1 cut(s) 344
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 2 cut(s) 106, 1176
BseGI GGATG 1 cut(s) 1075
BseJI GATNNNNATC 1 cut(s) 344
BseLI CCNNNNNNNGG 2 cut(s) 579, 1103
BseMII CTCAG 2 cut(s) 534, 702
BseNI ACTGG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 1332
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 2 cut(s) 86, 131
Bsh1285I CGRYCG 1 cut(s) 400
BshNI GGYRCC 2 cut(s) 569, 1093
BsiEI CGRYCG 1 cut(s) 400
BsiHKAI GWGCWC 2 cut(s) 153, 521
BsiSI CCGG 4 cut(s) 126, 174, 185, 488
BslFI GGGAC 1 cut(s) 595
BslI CCNNNNNNNGG 2 cut(s) 579, 1103
BsmAI GTCTC 2 cut(s) 320, 746
BsmBI CGTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 595
BsmI GAATGC 3 cut(s) 117, 1127, 1205
Bsp1286I GDGCHC 2 cut(s) 153, 521
Bsp143I GATC 6 cut(s) 227, 292, 397, 439, 830, 874
Bsp19I CCATGG 1 cut(s) 1176
BspACI CCGC 1 cut(s) 1024
BspCNI CTCAG 2 cut(s) 533, 701
BspFNI CGCG 2 cut(s) 86, 131
BspHI TCATGA 1 cut(s) 1162
BspLI GGNNCC 4 cut(s) 60, 486, 571, 1095
BspPI GGATC 4 cut(s) 287, 434, 838, 869
BspT107I GGYRCC 2 cut(s) 569, 1093
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 2 cut(s) 106, 1176
BssMI GATC 6 cut(s) 227, 292, 397, 439, 830, 874
BssNI GRCGYC 1 cut(s) 1094
BssT1I CCWWGG 2 cut(s) 106, 1176
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 5 cut(s) 469, 725, 919, 1084, 1160
BstACI GRCGYC 1 cut(s) 1094
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 149, 203, 679
BstDEI CTNAG 5 cut(s) 520, 688, 756, 815, 961
BstDSI CCRYGG 1 cut(s) 1176
BstF5I GGATG 1 cut(s) 1075
BstFNI CGCG 2 cut(s) 86, 131
BstH2I RGCGCY 2 cut(s) 1097, 1242
BstHHI GCGC 3 cut(s) 131, 1096, 1241
BstKTI GATC 6 cut(s) 230, 295, 400, 442, 833, 877
BstMAI GTCTC 2 cut(s) 320, 746
BstMBI GATC 6 cut(s) 227, 292, 397, 439, 830, 874
BstMCI CGRYCG 1 cut(s) 400
BstMWI GCNNNNNNNGC 3 cut(s) 230, 367, 516
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 124, 487, 544
BstSFI CTRYAG 2 cut(s) 1242, 1291
BstUI CGCG 2 cut(s) 86, 131
BstV1I GCAGC 1 cut(s) 1332
BstV2I GAAGAC 2 cut(s) 726, 1161
BsuI GTATCC 2 cut(s) 95, 705
BtgI CCRYGG 1 cut(s) 1176
BtrI CACGTC 1 cut(s) 1134
BtsCI GGATG 1 cut(s) 1075
BtsI GCAGTG 1 cut(s) 906
BtsIMutI CAGTG 2 cut(s) 432, 906
Cac8I GCNNGC 3 cut(s) 149, 203, 679
CciI TCATGA 1 cut(s) 1162
CfoI GCGC 3 cut(s) 131, 1096, 1241
Cfr13I GGNCC 1 cut(s) 485
Csp6I GTAC 3 cut(s) 182, 570, 1085
CviAII CATG 5 cut(s) 170, 362, 1021, 1163, 1177
CviQI GTAC 3 cut(s) 182, 570, 1085
DdeI CTNAG 5 cut(s) 520, 688, 756, 815, 961
DinI GGCGCC 1 cut(s) 1095
DpnI GATC 6 cut(s) 229, 294, 399, 441, 832, 876
DpnII GATC 6 cut(s) 227, 292, 397, 439, 830, 874
DrdI GACNNNNNNGTC 1 cut(s) 50
DriI GACNNNNNGTC 1 cut(s) 613
DseDI GACNNNNNNGTC 1 cut(s) 50
Eam1105I GACNNNNNGTC 1 cut(s) 613
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 106, 1176
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 485
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 1221
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 2 cut(s) 106, 1176
EcoT38I GRGCYC 1 cut(s) 153
EgeI GGCGCC 1 cut(s) 1095
EheI GGCGCC 1 cut(s) 1095
ErhI CCWWGG 2 cut(s) 106, 1176
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 5 cut(s) 173, 365, 1024, 1166, 1180
FalI AAGNNNNNCTT 2 cut(s) 1092, 1124
FaqI GGGAC 1 cut(s) 595
FatI CATG 5 cut(s) 169, 361, 1020, 1162, 1176
Fnu4HI GCNGC 1 cut(s) 1321
FokI GGATG 1 cut(s) 1082
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 1321
FspBI CTAG 2 cut(s) 477, 627
GlaI GCGC 3 cut(s) 130, 1095, 1240
GluI GCNGC 1 cut(s) 1321
GsuI CTGGAG 1 cut(s) 528
HaeII RGCGCY 2 cut(s) 1097, 1242
HapII CCGG 4 cut(s) 126, 174, 185, 488
HhaI GCGC 3 cut(s) 131, 1096, 1241
Hin1I GRCGYC 1 cut(s) 1094
Hin1II CATG 5 cut(s) 173, 365, 1024, 1166, 1180
Hin6I GCGC 3 cut(s) 129, 1094, 1239
HinP1I GCGC 3 cut(s) 129, 1094, 1239
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 3 cut(s) 159, 657, 970
HinfI GANTC 9 cut(s) 121, 188, 303, 310, 345, 538, 886, 988, 1040
HpaII CCGG 4 cut(s) 126, 174, 185, 488
HphI GGTGA 1 cut(s) 794
Hpy166II GTNNAC 2 cut(s) 6, 1328
Hpy188I TCNGA 8 cut(s) 339, 523, 607, 751, 879, 987, 993, 1039
Hpy188III TCNNGA 8 cut(s) 307, 437, 455, 649, 929, 1115, 1163, 1304
Hpy8I GTNNAC 2 cut(s) 6, 1328
Hpy99I CGWCG 3 cut(s) 47, 376, 619
HpyAV CCTTC 3 cut(s) 137, 399, 913
HpyCH4III ACNGT 5 cut(s) 469, 725, 919, 1084, 1160
HpyCH4IV ACGT 1 cut(s) 1133
HpyCH4V TGCA 4 cut(s) 115, 233, 632, 1016
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 367, 516
HpyF3I CTNAG 5 cut(s) 520, 688, 756, 815, 961
HpySE526I ACGT 1 cut(s) 1133
Hsp92I GRCGYC 1 cut(s) 1094
Hsp92II CATG 5 cut(s) 173, 365, 1024, 1166, 1180
HspAI GCGC 3 cut(s) 129, 1094, 1239
KasI GGCGCC 1 cut(s) 1093
KpnI GGTACC 1 cut(s) 573
Kzo9I GATC 6 cut(s) 227, 292, 397, 439, 830, 874
LmnI GCTCC 3 cut(s) 58, 176, 386
Lsp1109I GCAGC 1 cut(s) 1332
LweI GCATC 1 cut(s) 460
MaeI CTAG 2 cut(s) 477, 627
MaeII ACGT 1 cut(s) 1133
MaeIII GTNAC 5 cut(s) 52, 353, 364, 641, 1275
MalI GATC 6 cut(s) 229, 294, 399, 441, 832, 876
MboI GATC 6 cut(s) 227, 292, 397, 439, 830, 874
MhlI GDGCHC 2 cut(s) 153, 521
MluCI AATT 8 cut(s) 319, 670, 731, 742, 838, 1027, 1211, 1362
Mly113I GGCGCC 1 cut(s) 1094
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 4 cut(s) 241, 808, 902, 1084
MnlI CCTC 7 cut(s) 16, 41, 72, 191, 487, 521, 552
MseI TTAA 3 cut(s) 504, 635, 924
MspA1I CMGCKG 1 cut(s) 1323
MspI CCGG 4 cut(s) 126, 174, 185, 488
MspR9I CCNGG 3 cut(s) 126, 489, 546
Mva1269I GAATGC 3 cut(s) 117, 1127, 1205
MvaI CCWGG 1 cut(s) 546
MvnI CGCG 2 cut(s) 86, 131
MwoI GCNNNNNNNGC 3 cut(s) 230, 367, 516
NarI GGCGCC 1 cut(s) 1094
NciI CCSGG 2 cut(s) 126, 489
NcoI CCATGG 1 cut(s) 1176
NdeII GATC 6 cut(s) 227, 292, 397, 439, 830, 874
NlaIII CATG 5 cut(s) 173, 365, 1024, 1166, 1180
NlaIV GGNNCC 4 cut(s) 60, 486, 571, 1095
NmuCI GTSAC 2 cut(s) 52, 641
NspI RCATGY 1 cut(s) 365
PagI TCATGA 1 cut(s) 1162
PctI GAATGC 3 cut(s) 117, 1127, 1205
PfeI GAWTC 8 cut(s) 121, 303, 310, 345, 538, 886, 988, 1040
PflMI CCANNNNNTGG 1 cut(s) 1103
PfoI TCCNGGA 1 cut(s) 487
PkrI GCNGC 1 cut(s) 1322
Ple19I CGATCG 1 cut(s) 400
PleI GAGTC 1 cut(s) 196
PluTI GGCGCC 1 cut(s) 1097
PpsI GAGTC 1 cut(s) 196
PshBI ATTAAT 1 cut(s) 924
PsiI TTATAA 1 cut(s) 1140
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 4 cut(s) 60, 486, 571, 1095
PspPI GGNCC 1 cut(s) 485
PvuI CGATCG 1 cut(s) 400
PvuII CAGCTG 1 cut(s) 1323
RsaI GTAC 3 cut(s) 183, 571, 1086
RsaNI GTAC 3 cut(s) 182, 570, 1085
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 3 cut(s) 504, 635, 924
SatI GCNGC 1 cut(s) 1321
Sau3AI GATC 6 cut(s) 227, 292, 397, 439, 830, 874
Sau96I GGNCC 1 cut(s) 485
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 126, 489, 546
SduI GDGCHC 2 cut(s) 153, 521
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 2 cut(s) 1242, 1291
SfoI GGCGCC 1 cut(s) 1095
SinI GGWCC 1 cut(s) 485
Sse9I AATT 8 cut(s) 319, 670, 731, 742, 838, 1027, 1211, 1362
SsiI CCGC 1 cut(s) 1024
SspDI GGCGCC 1 cut(s) 1093
SspMI CTAG 2 cut(s) 477, 627
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 124, 487, 544
StyI CCWWGG 2 cut(s) 106, 1176
TaaI ACNGT 5 cut(s) 469, 725, 919, 1084, 1160
TaiI ACGT 1 cut(s) 1136
TaqI TCGA 3 cut(s) 153, 400, 617
TasI AATT 8 cut(s) 319, 670, 731, 742, 838, 1027, 1211, 1362
TfiI GAWTC 8 cut(s) 121, 303, 310, 345, 538, 886, 988, 1040
Tru1I TTAA 3 cut(s) 504, 635, 924
Tru9I TTAA 3 cut(s) 504, 635, 924
TscAI CASTG 2 cut(s) 432, 913
TseFI GTSAC 2 cut(s) 52, 641
TseI GCWGC 1 cut(s) 1320
Tsp45I GTSAC 2 cut(s) 52, 641
TspDTI ATGAA 6 cut(s) 158, 735, 971, 1179, 1343, 1383
TspGWI ACGGA 4 cut(s) 60, 71, 250, 1272
TspRI CASTG 2 cut(s) 432, 913
Van91I CCANNNNNTGG 1 cut(s) 1103
VpaK11BI GGWCC 1 cut(s) 485
VspI ATTAAT 1 cut(s) 924
XapI RAATTY 1 cut(s) 742
XceI RCATGY 1 cut(s) 365
XspI CTAG 2 cut(s) 477, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.