Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8307379.1

Orthogroup ID

OG0004066

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 870

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8307379.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

gttcccgagcaggaccgcaacaaccctaagcgttatgactgggcccgctcggcccgtaccgacaagggcgtcagcgccgtgggccaggtcgtatcgggccggttctatgtcgacccgccggggttcgtggaccgcctcaattcgaacctctccccgcaaattcggattttcgggtacaagcgcgtgacggcgtcgtttaatgcgaagaagttctgtgatcggaggaggtacgtttatcttatacctgtgtttgctcttgatcctagtgcccatagggatagagagagtgttaaggcgagtttggggtctgatgaggagtttgtgaagtgcttggagtgctccgatagggggcggaaagtcggtggattgatgggtaagcgcacttatgaattgagaggtgatagttcgaattcggaatcggtaaatggaggaattagcacaaatgatgattctcatatgaaaaacgacattgccaatgatattggggtttctgaagttgaggtggttgccaatgcggatatgaactctgaggtcaatggagaaggcaagaaggctgtgaagggaagtgggttttgttatggtgagaaggagaaggaaaggtttaatagaatcttgagttgttaccagggaactcacaacttccataacttcaccactagaactaaggctgaagaccccgctgcaacgagatacattatttcgttcactgcaaataccacggttacagttgagggtattgaatttgttaagtgtgaggtcgtggggcagagcttcatgcttcatcagattagaaagttaattgggctggcagtggcaatcatgaggaactgtgctcctgagtcattgttagaaagagctttgcaaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000959 GO:0000963 GO:0001522 GO:0002153 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070525 GO:0070900 GO:0070902 GO:0071704 GO:0090304 GO:0090646 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

289

Amino Acids

32.23

Weight (kDa)

8.88

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20370 AT1G76120 AT1G76120
fragaria_vesca	FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_5g07491
malus_domestica	MD15G1005300.v1.1 MD15G1005400.v1.1
prunus_persica	Prupe.1G357900_v2.0.a1
pyrus_communis	pycom08g00460 pycom15g00380 pycom15g00390
rosa_chinensis	RchiOBHm_Chr6g0303831
rosa_laevigata	RLG00000011040
rosa_multiflora	Rmu_co8307379.1_g000001 Rmu_sc0012878.1_g000001 Rmu_sc0022895.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164370
rosa_rugosa	Rorug06G0325200
rosa_samantha	Rh6AG439500 Rh6BG463500 Rh6CG451800 Rh6DG438700
rosa_wichuraiana	Rw6G038050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	1 cut(s)	183
AciI	CCGC	8 cut(s)	16, 46, 116, 133, 155, 352, 515, 678
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	3 cut(s)	159, 409, 740
AcuI	CTGAAG	2 cut(s)	513, 690
AcyI	GRCGYC	2 cut(s)	69, 191
AfaI	GTAC	3 cut(s)	58, 176, 230
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	740
AjnI	CCWGG	2 cut(s)	84, 624
AluBI	AGCT	2 cut(s)	771, 857
AluI	AGCT	2 cut(s)	771, 857
Alw21I	GWGCWC	2 cut(s)	341, 835
AlwI	GGATC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	5
AoxI	GGCC	4 cut(s)	42, 51, 82, 97
ApaI	GGGCCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	3 cut(s)	159, 409, 740
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	3 cut(s)	77, 183, 381
AspS9I	GGNCC	7 cut(s)	13, 42, 43, 52, 82, 97, 130
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	3 cut(s)	410, 593, 643
AsuII	TTCGAA	2 cut(s)	143, 407
AvaI	CYCGRG	1 cut(s)	5
AvaII	GGWCC	2 cut(s)	13, 130
BaeGI	GKGCMC	2 cut(s)	46, 271
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	2 cut(s)	341, 835
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	2 cut(s)	62, 204
BciT130I	CCWGG	2 cut(s)	86, 626
BcnI	CCSGG	1 cut(s)	120
BfaI	CTAG	2 cut(s)	264, 657
BfoI	RGCGCY	1 cut(s)	78
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	1 cut(s)	681
BlsI	GCNGC	1 cut(s)	682
Bme1390I	CCNGG	3 cut(s)	86, 120, 626
Bme18I	GGWCC	2 cut(s)	13, 130
BmeT110I	CYCGRG	1 cut(s)	5
BmgT120I	GGNCC	7 cut(s)	13, 42, 43, 52, 82, 97, 130
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	3 cut(s)	86, 120, 626
BmrI	ACTGGG	1 cut(s)	49
BmuI	ACTGGG	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu14I	TTCGAA	2 cut(s)	143, 407
BpuEI	CTTGAG	1 cut(s)	634
BpuMI	CCSGG	1 cut(s)	120
BsaHI	GRCGYC	2 cut(s)	69, 191
BsaJI	CCNNGG	4 cut(s)	78, 119, 625, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	86, 626
BseDI	CCNNGG	4 cut(s)	78, 119, 625, 717
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	2 cut(s)	519, 828
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	2 cut(s)	238, 329
BseSI	GKGCMC	2 cut(s)	46, 271
BseXI	GCAGC	1 cut(s)	667
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	4 cut(s)	44, 53, 84, 99
BsiHKAI	GWGCWC	2 cut(s)	341, 835
BsiHKCI	CYCGRG	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	100, 119
BslI	CCNNNNNNNGG	1 cut(s)	348
BsnI	GGCC	4 cut(s)	44, 53, 84, 99
BsoBI	CYCGRG	1 cut(s)	5
Bsp119I	TTCGAA	2 cut(s)	143, 407
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	4 cut(s)	46, 271, 341, 835
Bsp143I	GATC	2 cut(s)	217, 259
BspACI	CCGC	8 cut(s)	16, 46, 116, 133, 155, 352, 515, 678
BspANI	GGCC	4 cut(s)	44, 53, 84, 99
BspCNI	CTCAG	2 cut(s)	520, 829
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	254
BspT104I	TTCGAA	2 cut(s)	143, 407
BsrBI	CCGCTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	4 cut(s)	78, 119, 625, 717
BssMI	GATC	2 cut(s)	217, 259
BssNI	GRCGYC	2 cut(s)	69, 191
Bst2UI	CCWGG	2 cut(s)	86, 626
Bst4CI	ACNGT	3 cut(s)	721, 727, 830
BstACI	GRCGYC	2 cut(s)	69, 191
BstBI	TTCGAA	2 cut(s)	143, 407
BstC8I	GCNNGC	2 cut(s)	46, 807
BstDEI	CTNAG	4 cut(s)	27, 528, 663, 837
BstDSI	CCRYGG	2 cut(s)	78, 717
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	3 cut(s)	77, 183, 381
BstKTI	GATC	2 cut(s)	220, 262
BstMBI	GATC	2 cut(s)	217, 259
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 81, 336
BstNI	CCWGG	2 cut(s)	86, 626
BstSCI	CCNGG	3 cut(s)	84, 118, 624
BstSLI	GKGCMC	2 cut(s)	46, 271
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	667
BstV2I	GAAGAC	1 cut(s)	678
BsuRI	GGCC	4 cut(s)	44, 53, 84, 99
BtgI	CCRYGG	2 cut(s)	78, 717
BtsI	GCAGTG	2 cut(s)	705, 816
BtsIMutI	CAGTG	2 cut(s)	705, 816
Cac8I	GCNNGC	2 cut(s)	46, 807
CciI	TCATGA	1 cut(s)	819
CfoI	GCGC	3 cut(s)	77, 183, 381
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	7 cut(s)	13, 42, 43, 52, 82, 97, 130
CseI	GACGC	2 cut(s)	58, 180
Csp6I	GTAC	3 cut(s)	57, 175, 229
CviAII	CATG	2 cut(s)	775, 820
CviJI	RGCY	9 cut(s)	44, 53, 84, 99, 554, 668, 771, 805, 857
CviKI_1	RGCY	9 cut(s)	44, 53, 84, 99, 554, 668, 771, 805, 857
CviQI	GTAC	3 cut(s)	57, 175, 229
DdeI	CTNAG	4 cut(s)	27, 528, 663, 837
DpnI	GATC	2 cut(s)	219, 261
DpnII	GATC	2 cut(s)	217, 259
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	13, 130
Eco57I	CTGAAG	2 cut(s)	513, 690
Eco88I	CYCGRG	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	409
EcoRII	CCWGG	2 cut(s)	84, 624
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	2 cut(s)	778, 823
FatI	CATG	2 cut(s)	774, 819
FauI	CCCGC	4 cut(s)	53, 123, 162, 685
FauNDI	CATATG	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	681
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	681
FspBI	CTAG	2 cut(s)	264, 657
GlaI	GCGC	3 cut(s)	76, 182, 380
GluI	GCNGC	1 cut(s)	681
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	4 cut(s)	44, 53, 84, 99
HapII	CCGG	2 cut(s)	100, 119
HgaI	GACGC	2 cut(s)	58, 180
HhaI	GCGC	3 cut(s)	77, 183, 381
Hin1I	GRCGYC	2 cut(s)	69, 191
Hin1II	CATG	2 cut(s)	778, 823
Hin6I	GCGC	3 cut(s)	75, 181, 379
HinP1I	GCGC	3 cut(s)	75, 181, 379
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	4 cut(s)	416, 449, 609, 839
HpaII	CCGG	2 cut(s)	100, 119
HphI	GGTGA	3 cut(s)	410, 593, 643
Hpy166II	GTNNAC	3 cut(s)	112, 130, 705
Hpy188I	TCNGA	8 cut(s)	165, 222, 310, 343, 415, 493, 529, 786
Hpy188III	TCNNGA	5 cut(s)	5, 257, 613, 820, 836
Hpy8I	GTNNAC	3 cut(s)	112, 130, 705
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	5 cut(s)	536, 544, 553, 580, 586
HpyCH4III	ACNGT	3 cut(s)	721, 727, 830
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	683, 710, 862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 81, 336
HpyF3I	CTNAG	4 cut(s)	27, 528, 663, 837
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	2 cut(s)	69, 191
Hsp92II	CATG	2 cut(s)	778, 823
HspAI	GCGC	3 cut(s)	75, 181, 379
Kzo9I	GATC	2 cut(s)	217, 259
LmnI	GCTCC	2 cut(s)	344, 838
Lsp1109I	GCAGC	1 cut(s)	667
MaeI	CTAG	2 cut(s)	264, 657
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	184, 620, 721
MalI	GATC	2 cut(s)	219, 261
MbiI	CCGCTC	1 cut(s)	48
MboI	GATC	2 cut(s)	217, 259
MboII	GAAGA	2 cut(s)	217, 683
MhlI	GDGCHC	4 cut(s)	46, 271, 341, 835
MluCI	AATT	7 cut(s)	139, 159, 389, 409, 432, 740, 798
MlyI	GAGTC	1 cut(s)	848
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	5 cut(s)	198, 291, 603, 747, 797
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	2 cut(s)	100, 119
MspR9I	CCNGG	3 cut(s)	86, 120, 626
MvaI	CCWGG	2 cut(s)	86, 626
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	3 cut(s)	50, 81, 336
NciI	CCSGG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	456
NdeII	GATC	2 cut(s)	217, 259
NlaIII	CATG	2 cut(s)	778, 823
NlaIV	GGNNCC	1 cut(s)	44
NmeAIII	GCCGAG	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	184
NspV	TTCGAA	2 cut(s)	143, 407
PagI	TCATGA	1 cut(s)	819
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	3 cut(s)	416, 449, 609
PflFI	GACNNNGTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	682
PleI	GAGTC	1 cut(s)	847
PpsI	GAGTC	1 cut(s)	847
Psp6I	CCWGG	2 cut(s)	84, 624
PspGI	CCWGG	2 cut(s)	84, 624
PspN4I	GGNNCC	1 cut(s)	44
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	7 cut(s)	13, 42, 43, 52, 82, 97, 130
PsyI	GACNNNGTC	1 cut(s)	190
RsaI	GTAC	3 cut(s)	58, 176, 230
RsaNI	GTAC	3 cut(s)	57, 175, 229
SalI	GTCGAC	1 cut(s)	110
SaqAI	TTAA	5 cut(s)	198, 291, 603, 747, 797
SatI	GCNGC	1 cut(s)	681
Sau3AI	GATC	2 cut(s)	217, 259
Sau96I	GGNCC	7 cut(s)	13, 42, 43, 52, 82, 97, 130
SchI	GAGTC	1 cut(s)	848
ScrFI	CCNGG	3 cut(s)	86, 120, 626
SduI	GDGCHC	4 cut(s)	46, 271, 341, 835
SfiI	GGCCNNNNNGGCC	1 cut(s)	50
SfuI	TTCGAA	2 cut(s)	143, 407
SinI	GGWCC	2 cut(s)	13, 130
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
Sse9I	AATT	7 cut(s)	139, 159, 389, 409, 432, 740, 798
SsiI	CCGC	8 cut(s)	16, 46, 116, 133, 155, 352, 515, 678
SspMI	CTAG	2 cut(s)	264, 657
StyD4I	CCNGG	3 cut(s)	84, 118, 624
TaaI	ACNGT	3 cut(s)	721, 727, 830
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	111, 143, 407
TasI	AATT	7 cut(s)	139, 159, 389, 409, 432, 740, 798
TfiI	GAWTC	3 cut(s)	416, 449, 609
Tru1I	TTAA	5 cut(s)	198, 291, 603, 747, 797
Tru9I	TTAA	5 cut(s)	198, 291, 603, 747, 797
TscAI	CASTG	2 cut(s)	712, 816
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	5 cut(s)	402, 473, 536, 763, 770
TspRI	CASTG	2 cut(s)	712, 816
Tth111I	GACNNNGTC	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	13, 130
XapI	RAATTY	3 cut(s)	159, 409, 740
XmiI	GTMKAC	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	2 cut(s)	264, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.