Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004066

Physical Location & Seq

Genomic Coordinates Forward (+)

47676012 .. 47676797

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0325200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAGAAGGTCCATCCCTCCCAAAGCAAGCGGAGCACCTCGTACAACGTCGTATCATCTTCGACGCCGAAGAAGCTCCGGAGACTCCCTCACGTGTTCGCCAAGGTTCTCGAGCTTCCTTTCCAGTCCAGCGCCGACGTTTCCGTCCAAGAAAACTCCGACTCTTTCCGGTTCTCCGTGCCTGTGCCAGCCGGTCATCAAGTATACCACGACGAGGTTGTCAGGGCCAACGCGATAGAGATCTATCCGGGGGTGACCAAGATTGTGATACAAAAGATGAACGGTGGTGACTTTTCGCCGGAGGTGAACGACGTCGGGGGTCATTTCGATAAGTGGAGGTTTCGGCTCCCGCCTTCGACGAGACCGGAGTTGGCTAATGCGACATACGCTGGTCAAGAACTGGTTGTCACTGTTCCAAAGAACCATGTTCATGATCATGGTGATCGTAGCACGCGAGAGGAACAAGAACAAGATGAAAATGTAAGGGTAATTGTTATACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000959 GO:0000963 GO:0001522 GO:0002153 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070525 GO:0070900 GO:0070902 GO:0071704 GO:0090304 GO:0090646 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

167

Amino Acids

18.81

Weight (kDa)

8.04

Isoelectric Point (pI)

62.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20370 AT1G76120 AT1G76120
fragaria_vesca	FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_5g07491
malus_domestica	MD15G1005300.v1.1 MD15G1005400.v1.1
prunus_persica	Prupe.1G357900_v2.0.a1
pyrus_communis	pycom08g00460 pycom15g00380 pycom15g00390
rosa_chinensis	RchiOBHm_Chr6g0303831
rosa_laevigata	RLG00000011040
rosa_multiflora	Rmu_co8307379.1_g000001 Rmu_sc0012878.1_g000001 Rmu_sc0022895.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164370
rosa_rugosa	Rorug06G0325200
rosa_samantha	Rh6AG439500 Rh6BG463500 Rh6CG451800 Rh6DG438700
rosa_wichuraiana	Rw6G038050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	143, 218
AatII	GACGTC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	2 cut(s)	233, 454
AccIII	TCCGGA	1 cut(s)	78
AciI	CCGC	2 cut(s)	31, 350
AcvI	CACGTG	1 cut(s)	94
AcyI	GRCGYC	2 cut(s)	65, 312
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	214
AflIII	ACRYGT	1 cut(s)	93
AluBI	AGCT	2 cut(s)	76, 115
AluI	AGCT	2 cut(s)	76, 115
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	76, 355
Ama87I	CYCGRG	1 cut(s)	110
Aor13HI	TCCGGA	1 cut(s)	78
AoxI	GGCC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	2 cut(s)	10, 225
AsuC2I	CCSGG	1 cut(s)	249
AsuHPI	GGTGA	4 cut(s)	265, 299, 316, 452
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	10
BbrPI	CACGTG	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	1 cut(s)	21
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	76, 355
BfoI	RGCGCY	1 cut(s)	135
BglII	AGATCT	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	10, 225
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpuMI	CCSGG	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	239
BsaHI	GRCGYC	2 cut(s)	65, 312
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	102, 248
BsaWI	WCCGGW	3 cut(s)	78, 168, 364
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	124, 405
Bse8I	GATNNNNATC	1 cut(s)	239
BseAI	TCCGGA	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	102, 248
BseGI	GGATG	1 cut(s)	13
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseNI	ACTGG	2 cut(s)	124, 405
Bsh1236I	CGCG	2 cut(s)	233, 454
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	6 cut(s)	79, 169, 192, 248, 299, 365
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	2 cut(s)	76, 355
BsnI	GGCC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	355
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp13I	TCCGGA	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	240, 433, 442
BspACI	CCGC	2 cut(s)	31, 350
BspANI	GGCC	1 cut(s)	227
BspEI	TCCGGA	1 cut(s)	78
BspFNI	CGCG	2 cut(s)	233, 454
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	124, 405
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	102, 248
BssMI	GATC	3 cut(s)	240, 433, 442
BssNAI	GTATAC	1 cut(s)	205
BssNI	GRCGYC	2 cut(s)	65, 312
BssT1I	CCWWGG	1 cut(s)	102
Bst1107I	GTATAC	1 cut(s)	205
Bst4CI	ACNGT	3 cut(s)	284, 412, 501
BstACI	GRCGYC	2 cut(s)	65, 312
BstBAI	YACGTR	1 cut(s)	94
BstC8I	GCNNGC	3 cut(s)	29, 189, 452
BstEII	GGTNACC	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	2 cut(s)	233, 454
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	243, 436, 445
BstMAI	GTCTC	2 cut(s)	76, 355
BstMBI	GATC	3 cut(s)	240, 433, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 73, 386
BstPI	GGTNACC	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	247
BstUI	CGCG	2 cut(s)	233, 454
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BstZ17I	GTATAC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	3 cut(s)	29, 189, 452
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	10, 225
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	3 cut(s)	425, 431, 437
CviJI	RGCY	6 cut(s)	76, 115, 191, 227, 346, 374
CviKI_1	RGCY	6 cut(s)	76, 115, 191, 227, 346, 374
CviQI	GTAC	1 cut(s)	43
DpnI	GATC	3 cut(s)	242, 435, 444
DpnII	GATC	3 cut(s)	240, 433, 442
DrdI	GACNNNNNNGTC	2 cut(s)	143, 218
DseDI	GACNNNNNNGTC	2 cut(s)	143, 218
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	10
Eco72I	CACGTG	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	253
EcoO65I	GGTNACC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	3 cut(s)	428, 434, 440
FaiI	YATR	6 cut(s)	205, 385, 426, 432, 438, 497
FatI	CATG	3 cut(s)	424, 430, 436
FauI	CCCGC	1 cut(s)	357
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	204
GlaI	GCGC	1 cut(s)	133
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	6 cut(s)	79, 169, 192, 248, 299, 365
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	2 cut(s)	65, 312
Hin1II	CATG	3 cut(s)	428, 434, 440
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	2 cut(s)	84, 161
HpaII	CCGG	6 cut(s)	79, 169, 192, 248, 299, 365
HphI	GGTGA	4 cut(s)	265, 299, 316, 452
Hpy166II	GTNNAC	2 cut(s)	205, 307
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	4 cut(s)	79, 110, 395, 431
Hpy8I	GTNNAC	2 cut(s)	205, 307
Hpy99I	CGWCG	7 cut(s)	53, 67, 140, 215, 314, 317, 361
HpyAV	CCTTC	1 cut(s)	363
HpyCH4III	ACNGT	3 cut(s)	284, 412, 501
HpyCH4IV	ACGT	4 cut(s)	48, 93, 138, 312
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 73, 386
HpySE526I	ACGT	4 cut(s)	48, 93, 138, 312
Hsp92I	GRCGYC	2 cut(s)	65, 312
Hsp92II	CATG	3 cut(s)	428, 434, 440
HspAI	GCGC	1 cut(s)	132
Kpn2I	TCCGGA	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	240, 433, 442
LmnI	GCTCC	3 cut(s)	33, 81, 351
MaeII	ACGT	4 cut(s)	48, 93, 138, 312
MaeIII	GTNAC	3 cut(s)	253, 287, 406
MalI	GATC	3 cut(s)	242, 435, 444
MboI	GATC	3 cut(s)	240, 433, 442
MboII	GAAGA	3 cut(s)	16, 51, 82
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	489
MlyI	GAGTC	2 cut(s)	78, 155
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	7 cut(s)	28, 49, 99, 208, 295, 330, 451
MroI	TCCGGA	1 cut(s)	78
MslI	CAYNNNNRTG	2 cut(s)	429, 435
MspI	CCGG	6 cut(s)	79, 169, 192, 248, 299, 365
MspR9I	CCNGG	1 cut(s)	249
MvnI	CGCG	2 cut(s)	233, 454
MwoI	GCNNNNNNNGC	3 cut(s)	33, 73, 386
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	3 cut(s)	240, 433, 442
NlaIII	CATG	3 cut(s)	428, 434, 440
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	3 cut(s)	253, 287, 406
PaeR7I	CTCGAG	1 cut(s)	110
PagI	TCATGA	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	451
PleI	GAGTC	2 cut(s)	78, 155
PmaCI	CACGTG	1 cut(s)	94
PmlI	CACGTG	1 cut(s)	94
PpsI	GAGTC	2 cut(s)	78, 155
Ppu21I	YACGTR	1 cut(s)	94
PspCI	CACGTG	1 cut(s)	94
PspEI	GGTNACC	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	2 cut(s)	10, 225
PsuI	RGATCY	1 cut(s)	240
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	2 cut(s)	429, 435
Sau3AI	GATC	3 cut(s)	240, 433, 442
Sau96I	GGNCC	2 cut(s)	10, 225
SchI	GAGTC	2 cut(s)	78, 155
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	10
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	429, 435
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	489
SsiI	CCGC	2 cut(s)	31, 350
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	3 cut(s)	284, 412, 501
TaiI	ACGT	4 cut(s)	51, 96, 141, 315
TaqI	TCGA	4 cut(s)	62, 111, 327, 356
TasI	AATT	1 cut(s)	489
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	3 cut(s)	253, 287, 406
Tsp45I	GTSAC	3 cut(s)	253, 287, 406
TspDTI	ATGAA	4 cut(s)	17, 293, 419, 489
TspGWI	ACGGA	2 cut(s)	133, 166
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	10
XhoI	CTCGAG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	204
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.