pseudouridine synthase activity
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20370 AT1G76120 AT1G76120 |
| fragaria_vesca | FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_5g07491 |
| malus_domestica | MD15G1005300.v1.1 MD15G1005400.v1.1 |
| prunus_persica | Prupe.1G357900_v2.0.a1 |
| pyrus_communis | pycom08g00460 pycom15g00380 pycom15g00390 |
| rosa_chinensis | RchiOBHm_Chr6g0303831 |
| rosa_laevigata | RLG00000011040 |
| rosa_multiflora | Rmu_co8307379.1_g000001 Rmu_sc0012878.1_g000001 Rmu_sc0022895.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00164370 |
| rosa_rugosa | Rorug06G0325200 |
| rosa_samantha | Rh6AG439500 Rh6BG463500 Rh6CG451800 Rh6DG438700 |
| rosa_wichuraiana | Rw6G038050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 428 |
| AccIII | TCCGGA | 1 cut(s) | 436 |
| AciI | CCGC | 3 cut(s) | 282, 285, 316 |
| AcyI | GRCGYC | 1 cut(s) | 348 |
| AfaI | GTAC | 1 cut(s) | 253 |
| Aor13HI | TCCGGA | 1 cut(s) | 436 |
| AspLEI | GCGC | 1 cut(s) | 383 |
| AsuHPI | GGTGA | 2 cut(s) | 53, 163 |
| BanI | GGYRCC | 1 cut(s) | 428 |
| BccI | CCATC | 5 cut(s) | 13, 32, 179, 398, 422 |
| BceAI | ACGGC | 2 cut(s) | 361, 416 |
| BfoI | RGCGCY | 1 cut(s) | 384 |
| BisI | GCNGC | 2 cut(s) | 285, 316 |
| BlsI | GCNGC | 2 cut(s) | 286, 317 |
| BmiI | GGNNCC | 1 cut(s) | 430 |
| BmsI | GCATC | 2 cut(s) | 181, 203 |
| BsaHI | GRCGYC | 1 cut(s) | 348 |
| BsaJI | CCNNGG | 1 cut(s) | 394 |
| BsaWI | WCCGGW | 1 cut(s) | 436 |
| BseAI | TCCGGA | 1 cut(s) | 436 |
| BseDI | CCNNGG | 1 cut(s) | 394 |
| BseGI | GGATG | 4 cut(s) | 24, 34, 196, 390 |
| BseRI | GAGGAG | 1 cut(s) | 296 |
| BseYI | CCCAGC | 1 cut(s) | 377 |
| BshNI | GGYRCC | 1 cut(s) | 428 |
| BsiSI | CCGG | 1 cut(s) | 437 |
| BsmI | GAATGC | 3 cut(s) | 53, 165, 369 |
| Bsp13I | TCCGGA | 1 cut(s) | 436 |
| BspACI | CCGC | 3 cut(s) | 282, 285, 316 |
| BspEI | TCCGGA | 1 cut(s) | 436 |
| BspLI | GGNNCC | 1 cut(s) | 430 |
| BspT107I | GGYRCC | 1 cut(s) | 428 |
| BssECI | CCNNGG | 1 cut(s) | 394 |
| BssNI | GRCGYC | 1 cut(s) | 348 |
| BssT1I | CCWWGG | 1 cut(s) | 394 |
| Bst4CI | ACNGT | 1 cut(s) | 449 |
| BstACI | GRCGYC | 1 cut(s) | 348 |
| BstF5I | GGATG | 4 cut(s) | 24, 34, 196, 390 |
| BstH2I | RGCGCY | 1 cut(s) | 384 |
| BstHHI | GCGC | 1 cut(s) | 383 |
| BtsCI | GGATG | 4 cut(s) | 24, 34, 196, 390 |
| BtsIMutI | CAGTG | 1 cut(s) | 264 |
| CfoI | GCGC | 1 cut(s) | 383 |
| CseI | GACGC | 2 cut(s) | 171, 337 |
| Csp6I | GTAC | 1 cut(s) | 252 |
| CviAII | CATG | 1 cut(s) | 52 |
| CviJI | RGCY | 1 cut(s) | 413 |
| CviKI_1 | RGCY | 1 cut(s) | 413 |
| CviQI | GTAC | 1 cut(s) | 252 |
| DraI | TTTAAA | 1 cut(s) | 522 |
| Eco130I | CCWWGG | 1 cut(s) | 394 |
| Eco32I | GATATC | 1 cut(s) | 356 |
| EcoRV | GATATC | 1 cut(s) | 356 |
| EcoT14I | CCWWGG | 1 cut(s) | 394 |
| EcoT22I | ATGCAT | 2 cut(s) | 53, 196 |
| ErhI | CCWWGG | 1 cut(s) | 394 |
| FaeI | CATG | 1 cut(s) | 55 |
| FatI | CATG | 1 cut(s) | 51 |
| FauNDI | CATATG | 1 cut(s) | 546 |
| Fnu4HI | GCNGC | 2 cut(s) | 285, 316 |
| FokI | GGATG | 4 cut(s) | 31, 41, 203, 377 |
| Fsp4HI | GCNGC | 2 cut(s) | 285, 316 |
| GlaI | GCGC | 1 cut(s) | 382 |
| GluI | GCNGC | 2 cut(s) | 285, 316 |
| GsaI | CCCAGC | 1 cut(s) | 381 |
| HaeII | RGCGCY | 1 cut(s) | 384 |
| HapII | CCGG | 1 cut(s) | 437 |
| HgaI | GACGC | 2 cut(s) | 171, 337 |
| HhaI | GCGC | 1 cut(s) | 383 |
| Hin1I | GRCGYC | 1 cut(s) | 348 |
| Hin1II | CATG | 1 cut(s) | 55 |
| Hin6I | GCGC | 1 cut(s) | 381 |
| HinP1I | GCGC | 1 cut(s) | 381 |
| HinfI | GANTC | 2 cut(s) | 373, 481 |
| HpaII | CCGG | 1 cut(s) | 437 |
| HphI | GGTGA | 2 cut(s) | 53, 163 |
| Hpy188I | TCNGA | 1 cut(s) | 353 |
| Hpy188III | TCNNGA | 1 cut(s) | 437 |
| Hpy99I | CGWCG | 3 cut(s) | 165, 275, 353 |
| HpyAV | CCTTC | 1 cut(s) | 9 |
| HpyCH4III | ACNGT | 1 cut(s) | 449 |
| HpyCH4V | TGCA | 3 cut(s) | 51, 194, 367 |
| Hsp92I | GRCGYC | 1 cut(s) | 348 |
| Hsp92II | CATG | 1 cut(s) | 55 |
| HspAI | GCGC | 1 cut(s) | 381 |
| Kpn2I | TCCGGA | 1 cut(s) | 436 |
| LmnI | GCTCC | 2 cut(s) | 439, 496 |
| LpnPI | CCDG | 5 cut(s) | 169, 268, 391, 411, 450 |
| LweI | GCATC | 2 cut(s) | 181, 203 |
| MboII | GAAGA | 3 cut(s) | 322, 325, 419 |
| MluCI | AATT | 2 cut(s) | 57, 210 |
| MlyI | GAGTC | 1 cut(s) | 475 |
| MmeI | TCCRAC | 1 cut(s) | 331 |
| Mph1103I | ATGCAT | 2 cut(s) | 53, 196 |
| MroI | TCCGGA | 1 cut(s) | 436 |
| MseI | TTAA | 2 cut(s) | 60, 521 |
| MslI | CAYNNNNRTG | 2 cut(s) | 102, 199 |
| MspI | CCGG | 1 cut(s) | 437 |
| Mva1269I | GAATGC | 3 cut(s) | 53, 165, 369 |
| NdeI | CATATG | 1 cut(s) | 546 |
| NlaIII | CATG | 1 cut(s) | 55 |
| NlaIV | GGNNCC | 1 cut(s) | 430 |
| NsiI | ATGCAT | 2 cut(s) | 53, 196 |
| PctI | GAATGC | 3 cut(s) | 53, 165, 369 |
| PfeI | GAWTC | 1 cut(s) | 373 |
| PkrI | GCNGC | 2 cut(s) | 286, 317 |
| PleI | GAGTC | 1 cut(s) | 475 |
| PpsI | GAGTC | 1 cut(s) | 475 |
| PspFI | CCCAGC | 1 cut(s) | 377 |
| PspN4I | GGNNCC | 1 cut(s) | 430 |
| RsaI | GTAC | 1 cut(s) | 253 |
| RsaNI | GTAC | 1 cut(s) | 252 |
| RseI | CAYNNNNRTG | 2 cut(s) | 102, 199 |
| SaqAI | TTAA | 2 cut(s) | 60, 521 |
| SatI | GCNGC | 2 cut(s) | 285, 316 |
| SchI | GAGTC | 1 cut(s) | 475 |
| SetI | ASST | 8 cut(s) | 78, 85, 245, 324, 405, 423, 463, 490 |
| SfaNI | GCATC | 2 cut(s) | 181, 203 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 102, 199 |
| Sse9I | AATT | 2 cut(s) | 57, 210 |
| SsiI | CCGC | 3 cut(s) | 282, 285, 316 |
| StyI | CCWWGG | 1 cut(s) | 394 |
| TaaI | ACNGT | 1 cut(s) | 449 |
| TaqI | TCGA | 1 cut(s) | 405 |
| TasI | AATT | 2 cut(s) | 57, 210 |
| TauI | GCSGC | 2 cut(s) | 287, 318 |
| TfiI | GAWTC | 1 cut(s) | 373 |
| Tru1I | TTAA | 2 cut(s) | 60, 521 |
| Tru9I | TTAA | 2 cut(s) | 60, 521 |
| TscAI | CASTG | 1 cut(s) | 271 |
| TspDTI | ATGAA | 3 cut(s) | 60, 68, 226 |
| TspRI | CASTG | 1 cut(s) | 271 |
| Zsp2I | ATGCAT | 2 cut(s) | 53, 196 |