Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004066

Physical Location & Seq

Genomic Coordinates Forward (+)

322867 .. 323130

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1005300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGACCAGCAATTCAAAGCGCGTTTCTCCTCAGATTCGGATTTTCGGCTACAAACGCGTCACGGCGTCGTTTAACGCGAAGAAGTTCTGTGATCGGAGAAGGTATGTGTATCTGATTCCCGTATTTGCTCTTGATCCTTCTGCTCATCGCGATAGAGGGAGCGTGTTGGCTAGTCTTGGGTCTGATCAGAGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000959 GO:0000963 GO:0001522 GO:0002153 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070525 GO:0070900 GO:0070902 GO:0071704 GO:0090304 GO:0090646 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

66

Amino Acids

7.37

Weight (kDa)

10.37

Isoelectric Point (pI)

57.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20370 AT1G76120 AT1G76120
fragaria_vesca	FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_5g07491
malus_domestica	MD15G1005300.v1.1 MD15G1005400.v1.1
prunus_persica	Prupe.1G357900_v2.0.a1
pyrus_communis	pycom08g00460 pycom15g00380 pycom15g00390
rosa_chinensis	RchiOBHm_Chr6g0303831
rosa_laevigata	RLG00000011040
rosa_multiflora	Rmu_co8307379.1_g000001 Rmu_sc0012878.1_g000001 Rmu_sc0022895.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164370
rosa_rugosa	Rorug06G0325200
rosa_samantha	Rh6AG439500 Rh6BG463500 Rh6CG451800 Rh6DG438700
rosa_wichuraiana	Rw6G038050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	21, 57, 77, 150
AclWI	GGATC	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	15
AlwI	GGATC	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	21
BceAI	ACGGC	1 cut(s)	78
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	18
Bsh1236I	CGCG	4 cut(s)	21, 57, 77, 150
Bsp143I	GATC	3 cut(s)	91, 133, 184
Bsp68I	TCGCGA	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	4 cut(s)	21, 57, 77, 150
BspPI	GGATC	1 cut(s)	128
BssMI	GATC	3 cut(s)	91, 133, 184
BssNI	GRCGYC	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	30
BstFNI	CGCG	4 cut(s)	21, 57, 77, 150
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	3 cut(s)	94, 136, 187
BstMBI	GATC	3 cut(s)	91, 133, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstUI	CGCG	4 cut(s)	21, 57, 77, 150
BtgZI	GCGATG	1 cut(s)	131
BtuMI	TCGCGA	1 cut(s)	150
CfoI	GCGC	1 cut(s)	21
CseI	GACGC	2 cut(s)	46, 54
CviJI	RGCY	2 cut(s)	48, 170
CviKI_1	RGCY	2 cut(s)	48, 170
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	3 cut(s)	93, 135, 186
DpnII	GATC	3 cut(s)	91, 133, 184
FaiI	YATR	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	184
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	20
HgaI	GACGC	2 cut(s)	46, 54
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	34, 115
Hpy188I	TCNGA	6 cut(s)	33, 39, 96, 114, 184, 189
Hpy188III	TCNNGA	2 cut(s)	131, 149
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	93, 147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	65
HspAI	GCGC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	91, 133, 184
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	1 cut(s)	19
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	3 cut(s)	93, 135, 186
MboI	GATC	3 cut(s)	91, 133, 184
MboII	GAAGA	1 cut(s)	91
MluCI	AATT	1 cut(s)	10
MluI	ACGCGT	1 cut(s)	55
MnlI	CCTC	2 cut(s)	39, 149
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	2 cut(s)	72, 196
MvnI	CGCG	4 cut(s)	21, 57, 77, 150
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	3 cut(s)	91, 133, 184
NmuCI	GTSAC	1 cut(s)	58
NruI	TCGCGA	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	34, 115
RruI	TCGCGA	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	72, 196
Sau3AI	GATC	3 cut(s)	91, 133, 184
SetI	ASST	1 cut(s)	104
Sse9I	AATT	1 cut(s)	10
SspMI	CTAG	1 cut(s)	171
TasI	AATT	1 cut(s)	10
TfiI	GAWTC	2 cut(s)	34, 115
Tru1I	TTAA	2 cut(s)	72, 196
Tru9I	TTAA	2 cut(s)	72, 196
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.