Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012878.1

Orthogroup ID

OG0004066

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 807

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012878.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 722 bp

gtgctcctgagtcattgttagaaagagctttgcaaaaggatgttaacgtcaatgtgcctacggctcctgaggttggtttgtacttggatgagtgcttcttctcatcttataaccagaaatggggagatactcatgaagaagtgtcgatgaaagactatgaagcagaggcagaagctttcaaaatgaagcatatatacactcatattggagccactgagcataaagaaggtgttgtgggtctctggttgcactctcttaaccaccgcaattatccggatttaggtgctgacaacaatggagacaccagcatcgaaaggactgctgatatctccagtgctgacaacaatggggataccagcaatggaaagactgcatatatcgccagtgctgacaacaatggagacaccagcaacggaaaggctgccaatatctccagtgctgacaacaatggacacaccagcaacggaaaggctgctgatatctccagcaacggaaaggctgctgatatcttcagtgctgacaacaacggagacaccagcattgaaaagaccgccgatatctccagtgctgacaacaatggggataccagcaatggaaagactgcgtatatcgccagtgctgacaacaatggagacaccagcaacgaaaagactgccaccatctccagtgctgacaacaatggagacaccagcaaggctgatatctccaatgtcgcccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000959 GO:0000963 GO:0001522 GO:0002153 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070525 GO:0070900 GO:0070902 GO:0071704 GO:0090304 GO:0090646 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

239

Amino Acids

25.15

Weight (kDa)

4.4

Isoelectric Point (pI)

14.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20370 AT1G76120 AT1G76120
fragaria_vesca	FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_5g07491
malus_domestica	MD15G1005300.v1.1 MD15G1005400.v1.1
prunus_persica	Prupe.1G357900_v2.0.a1
pyrus_communis	pycom08g00460 pycom15g00380 pycom15g00390
rosa_chinensis	RchiOBHm_Chr6g0303831
rosa_laevigata	RLG00000011040
rosa_multiflora	Rmu_co8307379.1_g000001 Rmu_sc0012878.1_g000001 Rmu_sc0022895.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164370
rosa_rugosa	Rorug06G0325200
rosa_samantha	Rh6AG439500 Rh6BG463500 Rh6CG451800 Rh6DG438700
rosa_wichuraiana	Rw6G038050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AccIII	TCCGGA	1 cut(s)	273
AciI	CCGC	2 cut(s)	264, 551
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	3 cut(s)	73, 120, 280
AgsI	TTSAA	2 cut(s)	180, 544
AluBI	AGCT	2 cut(s)	28, 175
AluI	AGCT	2 cut(s)	28, 175
Alw21I	GWGCWC	1 cut(s)	6
Alw26I	GTCTC	6 cut(s)	244, 293, 395, 524, 626, 677
Aor13HI	TCCGGA	1 cut(s)	273
ApeKI	GCWGC	3 cut(s)	421, 472, 499
AxyI	CCTNAGG	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	178, 210
Bbv12I	GWGCWC	1 cut(s)	6
BbvI	GCAGC	3 cut(s)	408, 459, 486
BccI	CCATC	1 cut(s)	667
BceAI	ACGGC	1 cut(s)	77
BcgI	CGANNNNNNTGC	4 cut(s)	301, 335, 634, 668
BciVI	GTATCC	2 cut(s)	345, 576
BcoDI	GTCTC	6 cut(s)	244, 293, 395, 524, 626, 677
BfuI	GTATCC	2 cut(s)	345, 576
BisI	GCNGC	3 cut(s)	422, 473, 500
BlsI	GCNGC	3 cut(s)	423, 474, 501
BmiI	GGNNCC	2 cut(s)	65, 210
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	1 cut(s)	317
BmuI	ACTGGG	1 cut(s)	711
BpmI	CTGGAG	5 cut(s)	315, 417, 468, 546, 648
BsaI	GGTCTC	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 120, 280
Bse1I	ACTGG	7 cut(s)	332, 383, 434, 563, 614, 665, 717
Bse21I	CCTNAGG	1 cut(s)	68
Bse3DI	GCAATG	2 cut(s)	366, 597
BseAI	TCCGGA	1 cut(s)	273
BseGI	GGATG	2 cut(s)	45, 93
BseLI	CCNNNNNNNGG	3 cut(s)	73, 120, 280
BseMI	GCAATG	2 cut(s)	366, 597
BseMII	CTCAG	2 cut(s)	59, 206
BseNI	ACTGG	7 cut(s)	332, 383, 434, 563, 614, 665, 717
BseXI	GCAGC	3 cut(s)	408, 459, 486
BsiHKAI	GWGCWC	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	3 cut(s)	73, 120, 280
BsmAI	GTCTC	6 cut(s)	244, 293, 395, 524, 626, 677
Bso31I	GGTCTC	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	6
Bsp13I	TCCGGA	1 cut(s)	273
BspACI	CCGC	2 cut(s)	264, 551
BspCNI	CTCAG	2 cut(s)	60, 207
BspEI	TCCGGA	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	65, 210
BspTNI	GGTCTC	1 cut(s)	244
BsrDI	GCAATG	2 cut(s)	366, 597
BsrI	ACTGG	7 cut(s)	332, 383, 434, 563, 614, 665, 717
BstDEI	CTNAG	3 cut(s)	8, 68, 215
BstF5I	GGATG	2 cut(s)	45, 93
BstMAI	GTCTC	6 cut(s)	244, 293, 395, 524, 626, 677
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 610
BstV1I	GCAGC	3 cut(s)	408, 459, 486
Bsu36I	CCTNAGG	1 cut(s)	68
BsuI	GTATCC	2 cut(s)	345, 576
BtsCI	GGATG	2 cut(s)	45, 93
BtsIMutI	CAGTG	8 cut(s)	212, 339, 390, 441, 519, 570, 621, 672
CciI	TCATGA	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	8 cut(s)	28, 64, 175, 211, 421, 472, 499, 697
CviKI_1	RGCY	8 cut(s)	28, 64, 175, 211, 421, 472, 499, 697
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	3 cut(s)	8, 68, 215
Eco31I	GGTCTC	1 cut(s)	244
Eco32I	GATATC	5 cut(s)	327, 480, 507, 558, 702
Eco57I	CTGAAG	1 cut(s)	495
Eco81I	CCTNAGG	1 cut(s)	68
EcoRV	GATATC	5 cut(s)	327, 480, 507, 558, 702
FaeI	CATG	1 cut(s)	136
FatI	CATG	1 cut(s)	132
Fnu4HI	GCNGC	3 cut(s)	422, 473, 500
FokI	GGATG	2 cut(s)	52, 100
Fsp4HI	GCNGC	3 cut(s)	422, 473, 500
GluI	GCNGC	3 cut(s)	422, 473, 500
GsuI	CTGGAG	5 cut(s)	315, 417, 468, 546, 648
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	10
HpaI	GTTAAC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188III	TCNNGA	4 cut(s)	7, 67, 133, 274
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	3 cut(s)	33, 249, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 610
HpyF3I	CTNAG	3 cut(s)	8, 68, 215
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	136
Kpn2I	TCCGGA	1 cut(s)	273
KspAI	GTTAAC	1 cut(s)	45
LmnI	GCTCC	3 cut(s)	9, 69, 208
Lsp1109I	GCAGC	3 cut(s)	408, 459, 486
LweI	GCATC	1 cut(s)	317
MaeII	ACGT	1 cut(s)	47
MboII	GAAGA	3 cut(s)	90, 148, 501
MhlI	GDGCHC	1 cut(s)	6
MluCI	AATT	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	2 cut(s)	63, 159
MroI	TCCGGA	1 cut(s)	273
MseI	TTAA	2 cut(s)	44, 257
MspI	CCGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	2 cut(s)	379, 610
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	2 cut(s)	65, 210
PagI	TCATGA	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	423, 474, 501
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PsiI	TTATAA	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	65, 210
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	44, 257
SatI	GCNGC	3 cut(s)	422, 473, 500
SchI	GAGTC	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	6
SetI	ASST	6 cut(s)	30, 50, 74, 177, 231, 285
SfaNI	GCATC	1 cut(s)	317
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	2 cut(s)	264, 551
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	145, 311
TasI	AATT	1 cut(s)	267
TatI	WGTACW	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	44, 257
Tru9I	TTAA	2 cut(s)	44, 257
TscAI	CASTG	8 cut(s)	219, 339, 390, 441, 519, 570, 621, 672
TseI	GCWGC	3 cut(s)	421, 472, 499
TspDTI	ATGAA	4 cut(s)	149, 163, 173, 199
TspGWI	ACGGA	4 cut(s)	428, 479, 506, 542
TspRI	CASTG	8 cut(s)	219, 339, 390, 441, 519, 570, 621, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.