Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004066

Physical Location & Seq

Genomic Coordinates Forward (+)

67337558 .. 67339349

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG463500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1704 bp

ATGGAAAACCCAGACAACACAAAAGCCACAAGATCACCACCACCTCCGCCGCCGCAACAACCAGACCCCAAGAAGCTCAAAATGTCCACCACCACCACCGACGACGAAGAAACGGCCGCCACCGCCCAAAAGCAACGCATCAAACGCCGCAAGGTCGCAATCTTCTTCGCCTACTGCGGCGTCGGATACCAAGGAATGCAAAAGAACCCCGGCGCCAAGACCATCGAAGGCGACCTCGAAGAAGCCCTCTACCTCTCCGGCGCGGTCCCCGAGCAGGACCGCAACAACCCTAAGCGTTATGACTGGGCCCGCTCGGCCCGTACCGACAAGGGCGTCAGCGCCGTGGGCCAGGTCGTATCGGGCCGGTTCTATGTCGACCCGCCGGGGTTCGTGGACCGCCTCAATTCGAACCTCTGCCCGCAAATTCGGATTTTCGGGTACAAGCGCGTGACGGCGTCGTTTAATGCGAAGAAGTTCTGTGATCGGAGAAGGTATGTTTATCTTATTCCTGTGTTTGCTCTTGATCCTAGTGCCCATAGGGATAGAGAGAGTGTTAAGGCGAGTTTGGGGTCTGATGAGGAGTTTGTGAAGTGCTTGGAGTGCTCCGATAGGGGGCGGAAAGTCGGTGGATTGATGGGCAAGCGCACTTATGAATTGAGAGGTGATAGTTCGAATGGAGGAATTAGCACAAATGATGATTCTCATATGAAAAACGACATTTCTGAAGTTGAGGTGGTTGCCAATGCGGATATGAACTCTGAGGTCAGTGGAGAAGAGAAGCAGGTCGTGAAGGGAAGTGGGTTTTGTTATGGTGAGAAGGAGAAGGAAAGGTTTAATAGAATCTTGAGTTGTTACCAGGGTACTCACAACTTCCATAACTTCACCACTAGAACTAAGGCTGAAGACCCTGCTGCAACGAGATACATTATTTCGTTCACTGCAAATACCACGGTTACAGTTGAGGGTATTGAATTTGTCAAGTGTGAGGTCGTGGGGCAGAGCTTCATGCTTCATCAGATTAGGAAGTTAATTGGGCTGGCAGTGGCAATCATGAGGAACTGTGCTCCTGAGTCGTTGTTAGAAAGAGCTTTGCAAAAGGATGTTAACGTCAATGTGCCTACGGCTCCTGAGGTTGGTTTGTACTTGGATGAGTGCTTCTTCTCATCATATAACCAGAAATGGGGAGACACTCATGAAGAAGTGTCGATGAAAGACTATGAAGCAGAGGCAGAAGCTTTCAAAATGAAGCATATTTACACTCATATTGGAGCCACTGAGCATAAAGAAGGTGTTGTGGGTCTCTGGTTGCACTCTCTTAACCACCGCAATTATCCGGATTTAGGTGCTGACAACAATGGAGACACCAGCATCGAAAGGACTGCTGATATCTCCAGTGCTGACAACAATGGAGACACCAGCATCGAAAGGACTGCTGATATCTCCAGTGCTGACAACAATGGAGACACCAGCAACGGAAAGACTGCTGATATCTTCAGTGCTGACAACAACGGAGACACCAGCATTGAAAAGACCGCCGATATCTCCAGTGCTGACAACAATGGGGATACCAGCAATGGAAAGACTGCGTATATCGCCACTGCTGACAACAATGGGGATACCAGCAATGGAAAGACTGCGTATATCGCCACTGCTGACAACAATGGAGACACCAGCAAGGCTGATATCTCCAATGTCGCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000959 GO:0000963 GO:0001522 GO:0002153 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070525 GO:0070900 GO:0070902 GO:0071704 GO:0090304 GO:0090646 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

567

Amino Acids

62.27

Weight (kDa)

5.37

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_1	PF01416	285 - 387	4.1e-12	tRNA pseudouridine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20370 AT1G76120 AT1G76120
fragaria_vesca	FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_5g07491
malus_domestica	MD15G1005300.v1.1 MD15G1005400.v1.1
prunus_persica	Prupe.1G357900_v2.0.a1
pyrus_communis	pycom08g00460 pycom15g00380 pycom15g00390
rosa_chinensis	RchiOBHm_Chr6g0303831
rosa_laevigata	RLG00000011040
rosa_multiflora	Rmu_co8307379.1_g000001 Rmu_sc0012878.1_g000001 Rmu_sc0022895.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164370
rosa_rugosa	Rorug06G0325200
rosa_samantha	Rh6AG439500 Rh6BG463500 Rh6CG451800 Rh6DG438700
rosa_wichuraiana	Rw6G038050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	772
AccB1I	GGYRCC	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	2 cut(s)	263, 447
AccIII	TCCGGA	1 cut(s)	1333
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	423, 971
AcuI	CTGAAG	3 cut(s)	744, 921, 1477
AcyI	GRCGYC	4 cut(s)	180, 213, 333, 455
AfaI	GTAC	4 cut(s)	322, 440, 862, 1142
AfiI	CCNNNNNNNGG	5 cut(s)	274, 612, 1133, 1180, 1340
AgsI	TTSAA	3 cut(s)	971, 1240, 1526
AjnI	CCWGG	2 cut(s)	348, 855
AluBI	AGCT	4 cut(s)	76, 1002, 1088, 1235
AluI	AGCT	4 cut(s)	76, 1002, 1088, 1235
Alw21I	GWGCWC	2 cut(s)	605, 1066
Alw26I	GTCTC	7 cut(s)	1179, 1304, 1353, 1404, 1455, 1506, 1659
AlwI	GGATC	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	1333
AoxI	GGCC	5 cut(s)	114, 306, 315, 346, 361
ApaI	GGGCCC	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	911
ApoI	RAATTY	2 cut(s)	423, 971
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	5 cut(s)	215, 263, 341, 447, 645
AspS9I	GGNCC	8 cut(s)	265, 277, 306, 307, 316, 346, 361, 394
AsuC2I	CCSGG	2 cut(s)	210, 384
AsuHPI	GGTGA	4 cut(s)	27, 674, 824, 874
AsuII	TTCGAA	2 cut(s)	407, 671
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	3 cut(s)	265, 277, 394
AxyI	CCTNAGG	1 cut(s)	1128
BaeGI	GKGCMC	2 cut(s)	310, 535
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	310
BarI	GAAGNNNNNNTAC	2 cut(s)	1238, 1270
BbsI	GAAGAC	1 cut(s)	909
Bbv12I	GWGCWC	2 cut(s)	605, 1066
BbvI	GCAGC	1 cut(s)	898
BccI	CCATC	2 cut(s)	230, 628
BceAI	ACGGC	4 cut(s)	129, 326, 468, 1137
BcgI	CGANNNNNNTGC	4 cut(s)	1361, 1395, 1412, 1446
BciT130I	CCWGG	2 cut(s)	350, 857
BciVI	GTATCC	3 cut(s)	179, 1558, 1609
BcnI	CCSGG	2 cut(s)	210, 384
BcoDI	GTCTC	7 cut(s)	1179, 1304, 1353, 1404, 1455, 1506, 1659
BfaI	CTAG	2 cut(s)	528, 888
BfoI	RGCGCY	2 cut(s)	216, 342
BfuAI	ACCTGC	1 cut(s)	772
BfuI	GTATCC	3 cut(s)	179, 1558, 1609
BglI	GCCNNNNNGGC	1 cut(s)	314
BisI	GCNGC	6 cut(s)	50, 53, 117, 148, 178, 912
BlsI	GCNGC	6 cut(s)	51, 54, 118, 149, 179, 913
Bme1390I	CCNGG	4 cut(s)	210, 350, 384, 857
Bme18I	GGWCC	3 cut(s)	265, 277, 394
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	8 cut(s)	265, 277, 306, 307, 316, 346, 361, 394
BmiI	GGNNCC	5 cut(s)	214, 267, 308, 1125, 1270
BmrFI	CCNGG	4 cut(s)	210, 350, 384, 857
BmrI	ACTGGG	2 cut(s)	313, 1693
BmsI	GCATC	3 cut(s)	147, 1377, 1428
BmuI	ACTGGG	2 cut(s)	313, 1693
BpiI	GAAGAC	1 cut(s)	909
BpmI	CTGGAG	3 cut(s)	1375, 1426, 1528
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	2 cut(s)	407, 671
BpuEI	CTTGAG	1 cut(s)	865
BpuMI	CCSGG	2 cut(s)	210, 384
BsaHI	GRCGYC	4 cut(s)	180, 213, 333, 455
BsaI	GGTCTC	1 cut(s)	1304
BsaJI	CCNNGG	6 cut(s)	190, 208, 342, 383, 856, 948
BsaWI	WCCGGW	1 cut(s)	1333
Bsc4I	CCNNNNNNNGG	5 cut(s)	274, 612, 1133, 1180, 1340
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	5 cut(s)	308, 1392, 1443, 1545, 1699
Bse21I	CCTNAGG	1 cut(s)	1128
Bse3DI	GCAATG	2 cut(s)	1579, 1630
BseAI	TCCGGA	1 cut(s)	1333
BseBI	CCWGG	2 cut(s)	350, 857
BseDI	CCNNGG	6 cut(s)	190, 208, 342, 383, 856, 948
BseGI	GGATG	2 cut(s)	1105, 1153
BseLI	CCNNNNNNNGG	5 cut(s)	274, 612, 1133, 1180, 1340
BseMI	GCAATG	2 cut(s)	1579, 1630
BseMII	CTCAG	4 cut(s)	750, 1059, 1119, 1266
BseNI	ACTGG	5 cut(s)	308, 1392, 1443, 1545, 1699
BseRI	GAGGAG	1 cut(s)	593
BseSI	GKGCMC	2 cut(s)	310, 535
BseX3I	CGGCCG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	898
Bsh1236I	CGCG	2 cut(s)	263, 447
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	5 cut(s)	116, 308, 317, 348, 363
BshNI	GGYRCC	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	605, 1066
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	5 cut(s)	210, 258, 364, 383, 1334
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	5 cut(s)	274, 612, 1133, 1180, 1340
BsmAI	GTCTC	7 cut(s)	1179, 1304, 1353, 1404, 1455, 1506, 1659
BsmFI	GGGAC	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	5 cut(s)	116, 308, 317, 348, 363
Bso31I	GGTCTC	1 cut(s)	1304
BsoBI	CYCGRG	1 cut(s)	269
Bsp119I	TTCGAA	2 cut(s)	407, 671
Bsp120I	GGGCCC	1 cut(s)	306
Bsp1286I	GDGCHC	4 cut(s)	310, 535, 605, 1066
Bsp13I	TCCGGA	1 cut(s)	1333
Bsp143I	GATC	3 cut(s)	32, 481, 523
BspANI	GGCC	5 cut(s)	116, 308, 317, 348, 363
BspCNI	CTCAG	4 cut(s)	751, 1060, 1120, 1267
BspEI	TCCGGA	1 cut(s)	1333
BspFNI	CGCG	2 cut(s)	263, 447
BspHI	TCATGA	2 cut(s)	1050, 1192
BspLI	GGNNCC	5 cut(s)	214, 267, 308, 1125, 1270
BspMI	ACCTGC	1 cut(s)	772
BspPI	GGATC	1 cut(s)	518
BspT104I	TTCGAA	2 cut(s)	407, 671
BspT107I	GGYRCC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	1304
BsrBI	CCGCTC	1 cut(s)	312
BsrDI	GCAATG	2 cut(s)	1579, 1630
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	5 cut(s)	308, 1392, 1443, 1545, 1699
BssAI	RCCGGY	1 cut(s)	363
BssECI	CCNNGG	6 cut(s)	190, 208, 342, 383, 856, 948
BssMI	GATC	3 cut(s)	32, 481, 523
BssNI	GRCGYC	4 cut(s)	180, 213, 333, 455
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	350, 857
Bst4CI	ACNGT	3 cut(s)	952, 958, 1061
Bst6I	CTCTTC	1 cut(s)	768
BstACI	GRCGYC	4 cut(s)	180, 213, 333, 455
BstBI	TTCGAA	2 cut(s)	407, 671
BstC8I	GCNNGC	4 cut(s)	310, 419, 641, 1038
BstDEI	CTNAG	6 cut(s)	291, 759, 894, 1068, 1128, 1275
BstDSI	CCRYGG	2 cut(s)	342, 948
BstF5I	GGATG	2 cut(s)	1105, 1153
BstFNI	CGCG	2 cut(s)	263, 447
BstH2I	RGCGCY	2 cut(s)	216, 342
BstHHI	GCGC	5 cut(s)	215, 263, 341, 447, 645
BstKTI	GATC	3 cut(s)	35, 484, 526
BstMAI	GTCTC	7 cut(s)	1179, 1304, 1353, 1404, 1455, 1506, 1659
BstMBI	GATC	3 cut(s)	32, 481, 523
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 144, 314, 345, 600, 1592, 1643
BstNI	CCWGG	2 cut(s)	350, 857
BstSCI	CCNGG	4 cut(s)	208, 348, 382, 855
BstSLI	GKGCMC	2 cut(s)	310, 535
BstUI	CGCG	2 cut(s)	263, 447
BstV1I	GCAGC	1 cut(s)	898
BstV2I	GAAGAC	1 cut(s)	909
BstZI	CGGCCG	1 cut(s)	114
Bsu36I	CCTNAGG	1 cut(s)	1128
BsuI	GTATCC	3 cut(s)	179, 1558, 1609
BsuRI	GGCC	5 cut(s)	116, 308, 317, 348, 363
BtgI	CCRYGG	2 cut(s)	342, 948
BtsCI	GGATG	2 cut(s)	1105, 1153
BtsI	GCAGTG	4 cut(s)	936, 1047, 1596, 1647
BveI	ACCTGC	1 cut(s)	772
Cac8I	GCNNGC	4 cut(s)	310, 419, 641, 1038
CciI	TCATGA	2 cut(s)	1050, 1192
CfoI	GCGC	5 cut(s)	215, 263, 341, 447, 645
Cfr10I	RCCGGY	1 cut(s)	363
Cfr13I	GGNCC	8 cut(s)	265, 277, 306, 307, 316, 346, 361, 394
CseI	GACGC	3 cut(s)	169, 322, 444
Csp6I	GTAC	4 cut(s)	321, 439, 861, 1141
CviAII	CATG	3 cut(s)	1006, 1051, 1193
CviQI	GTAC	4 cut(s)	321, 439, 861, 1141
DdeI	CTNAG	6 cut(s)	291, 759, 894, 1068, 1128, 1275
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	3 cut(s)	34, 483, 525
DpnII	GATC	3 cut(s)	32, 481, 523
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	114
EagI	CGGCCG	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
EciI	GGCGGA	2 cut(s)	36, 631
EclXI	CGGCCG	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	1304
Eco32I	GATATC	5 cut(s)	1387, 1438, 1489, 1540, 1684
Eco47I	GGWCC	3 cut(s)	265, 277, 394
Eco52I	CGGCCG	1 cut(s)	114
Eco57I	CTGAAG	3 cut(s)	744, 921, 1477
Eco81I	CCTNAGG	1 cut(s)	1128
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	348, 855
EcoRV	GATATC	5 cut(s)	1387, 1438, 1489, 1540, 1684
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	310
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	3 cut(s)	1009, 1054, 1196
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	3 cut(s)	1005, 1050, 1192
FauI	CCCGC	3 cut(s)	317, 387, 426
FauNDI	CATATG	1 cut(s)	705
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	6 cut(s)	50, 53, 117, 148, 178, 912
FokI	GGATG	2 cut(s)	1112, 1160
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	6 cut(s)	50, 53, 117, 148, 178, 912
FspBI	CTAG	2 cut(s)	528, 888
GlaI	GCGC	5 cut(s)	214, 262, 340, 446, 644
GluI	GCNGC	6 cut(s)	50, 53, 117, 148, 178, 912
GsuI	CTGGAG	3 cut(s)	1375, 1426, 1528
HaeII	RGCGCY	2 cut(s)	216, 342
HaeIII	GGCC	5 cut(s)	116, 308, 317, 348, 363
HapII	CCGG	5 cut(s)	210, 258, 364, 383, 1334
HgaI	GACGC	3 cut(s)	169, 322, 444
HhaI	GCGC	5 cut(s)	215, 263, 341, 447, 645
Hin1I	GRCGYC	4 cut(s)	180, 213, 333, 455
Hin1II	CATG	3 cut(s)	1009, 1054, 1196
Hin6I	GCGC	5 cut(s)	213, 261, 339, 445, 643
HinP1I	GCGC	5 cut(s)	213, 261, 339, 445, 643
HincII	GTYRAC	2 cut(s)	376, 1105
HindII	GTYRAC	2 cut(s)	376, 1105
HindIII	AAGCTT	1 cut(s)	1233
HinfI	GANTC	3 cut(s)	698, 840, 1070
HpaI	GTTAAC	1 cut(s)	1105
HpaII	CCGG	5 cut(s)	210, 258, 364, 383, 1334
HphI	GGTGA	4 cut(s)	27, 674, 824, 874
Hpy166II	GTNNAC	5 cut(s)	87, 376, 394, 936, 1105
Hpy188I	TCNGA	8 cut(s)	185, 429, 486, 574, 607, 724, 760, 1017
Hpy188III	TCNNGA	8 cut(s)	521, 787, 844, 1051, 1067, 1127, 1193, 1334
Hpy8I	GTNNAC	5 cut(s)	87, 376, 394, 936, 1105
Hpy99I	CGWCG	4 cut(s)	104, 107, 185, 460
HpyAV	CCTTC	6 cut(s)	221, 483, 784, 811, 817, 1280
HpyCH4III	ACNGT	3 cut(s)	952, 958, 1061
HpyCH4IV	ACGT	1 cut(s)	1107
HpyCH4V	TGCA	5 cut(s)	199, 914, 941, 1093, 1309
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 144, 314, 345, 600, 1592, 1643
HpyF3I	CTNAG	6 cut(s)	291, 759, 894, 1068, 1128, 1275
HpySE526I	ACGT	1 cut(s)	1107
Hsp92I	GRCGYC	4 cut(s)	180, 213, 333, 455
Hsp92II	CATG	3 cut(s)	1009, 1054, 1196
HspAI	GCGC	5 cut(s)	213, 261, 339, 445, 643
KasI	GGCGCC	1 cut(s)	212
Kpn2I	TCCGGA	1 cut(s)	1333
KspAI	GTTAAC	1 cut(s)	1105
Kzo9I	GATC	3 cut(s)	32, 481, 523
LmnI	GCTCC	4 cut(s)	608, 1069, 1129, 1268
Lsp1109I	GCAGC	1 cut(s)	898
LweI	GCATC	3 cut(s)	147, 1377, 1428
MaeI	CTAG	2 cut(s)	528, 888
MaeII	ACGT	1 cut(s)	1107
MaeIII	GTNAC	3 cut(s)	448, 851, 952
MalI	GATC	3 cut(s)	34, 483, 525
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	3 cut(s)	32, 481, 523
MhlI	GDGCHC	4 cut(s)	310, 535, 605, 1066
MluCI	AATT	7 cut(s)	403, 423, 653, 681, 971, 1029, 1327
Mly113I	GGCGCC	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	1079
MmeI	TCCRAC	1 cut(s)	163
MroI	TCCGGA	1 cut(s)	1333
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	6 cut(s)	462, 555, 834, 1028, 1104, 1317
MspI	CCGG	5 cut(s)	210, 258, 364, 383, 1334
MspR9I	CCNGG	4 cut(s)	210, 350, 384, 857
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	350, 857
MvnI	CGCG	2 cut(s)	263, 447
MwoI	GCNNNNNNNGC	7 cut(s)	122, 144, 314, 345, 600, 1592, 1643
NarI	GGCGCC	1 cut(s)	213
NciI	CCSGG	2 cut(s)	210, 384
NdeI	CATATG	1 cut(s)	705
NdeII	GATC	3 cut(s)	32, 481, 523
NlaIII	CATG	3 cut(s)	1009, 1054, 1196
NlaIV	GGNNCC	5 cut(s)	214, 267, 308, 1125, 1270
NmeAIII	GCCGAG	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	448
NspV	TTCGAA	2 cut(s)	407, 671
PagI	TCATGA	2 cut(s)	1050, 1192
PcsI	WCGNNNNNNNCGW	1 cut(s)	464
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	698, 840
PflFI	GACNNNGTC	1 cut(s)	454
PkrI	GCNGC	6 cut(s)	51, 54, 118, 149, 179, 913
PleI	GAGTC	1 cut(s)	1078
PluTI	GGCGCC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	1078
Psp6I	CCWGG	2 cut(s)	348, 855
PspGI	CCWGG	2 cut(s)	348, 855
PspN4I	GGNNCC	5 cut(s)	214, 267, 308, 1125, 1270
PspOMI	GGGCCC	1 cut(s)	306
PspPI	GGNCC	8 cut(s)	265, 277, 306, 307, 316, 346, 361, 394
PsyI	GACNNNGTC	1 cut(s)	454
RsaI	GTAC	4 cut(s)	322, 440, 862, 1142
RsaNI	GTAC	4 cut(s)	321, 439, 861, 1141
SalI	GTCGAC	1 cut(s)	374
SaqAI	TTAA	6 cut(s)	462, 555, 834, 1028, 1104, 1317
SatI	GCNGC	6 cut(s)	50, 53, 117, 148, 178, 912
Sau3AI	GATC	3 cut(s)	32, 481, 523
Sau96I	GGNCC	8 cut(s)	265, 277, 306, 307, 316, 346, 361, 394
SchI	GAGTC	1 cut(s)	1079
ScrFI	CCNGG	4 cut(s)	210, 350, 384, 857
SduI	GDGCHC	4 cut(s)	310, 535, 605, 1066
SfaNI	GCATC	3 cut(s)	147, 1377, 1428
SfiI	GGCCNNNNNGGCC	1 cut(s)	314
SfoI	GGCGCC	1 cut(s)	214
SfuI	TTCGAA	2 cut(s)	407, 671
SinI	GGWCC	3 cut(s)	265, 277, 394
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
Sse9I	AATT	7 cut(s)	403, 423, 653, 681, 971, 1029, 1327
SspDI	GGCGCC	1 cut(s)	212
SspMI	CTAG	2 cut(s)	528, 888
StyD4I	CCNGG	4 cut(s)	208, 348, 382, 855
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	3 cut(s)	952, 958, 1061
TaiI	ACGT	1 cut(s)	1110
TaqI	TCGA	8 cut(s)	225, 237, 375, 407, 671, 1205, 1371, 1422
TasI	AATT	7 cut(s)	403, 423, 653, 681, 971, 1029, 1327
TatI	WGTACW	1 cut(s)	1140
TauI	GCSGC	5 cut(s)	52, 55, 119, 150, 180
TfiI	GAWTC	2 cut(s)	698, 840
Tru1I	TTAA	6 cut(s)	462, 555, 834, 1028, 1104, 1317
Tru9I	TTAA	6 cut(s)	462, 555, 834, 1028, 1104, 1317
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	1 cut(s)	911
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	9 cut(s)	666, 722, 767, 994, 1001, 1209, 1223, 1233, 1259
TspGWI	ACGGA	2 cut(s)	1488, 1524
Tth111I	GACNNNGTC	1 cut(s)	454
VpaK11BI	GGWCC	3 cut(s)	265, 277, 394
XapI	RAATTY	2 cut(s)	423, 971
XmiI	GTMKAC	1 cut(s)	375
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	2 cut(s)	528, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.