Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004066

Physical Location & Seq

Genomic Coordinates Forward (+)

10182851 .. 10186432

Gene Structure 3582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09040.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGATTTCCAATTCAAGTTTACTTGTACCAGCACCACCACTGACGACGAACAAACCGCTGCCACAACCCAAAAGCAACGCCTCAAACCCCGCAAGGTCGCAATCTTCTTCGCCTACTACAGCGTTGAATATCAAGGAATGCAAAAGAATCCTGGCGCCAAAACCATCCAAGGTGACCCTGAAGAAGCCATCTACCTCTCTGGTGCCGTTCCGGAGCAAGACCGTCTGAGTGTGGAGGTATGGGTTCTCATGTCCAGGTTCATTGATCAATCCAGAAATGACGTTTATAGTGATGCAGGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000959 GO:0000963 GO:0001522 GO:0002153 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009893 GO:0009982 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0019219 GO:0019222 GO:0030374 GO:0031119 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0070525 GO:0070900 GO:0070902 GO:0071704 GO:0080090 GO:0090304 GO:0090646 GO:0097159 GO:0106029 GO:0140053 GO:0140098 GO:0140101 GO:0140110 GO:1900864 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990481 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04624 map04624

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

102

Amino Acids

11.49

Weight (kDa)

4.82

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20370 AT1G76120 AT1G76120
fragaria_vesca	FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_5g07491
malus_domestica	MD15G1005300.v1.1 MD15G1005400.v1.1
prunus_persica	Prupe.1G357900_v2.0.a1
pyrus_communis	pycom08g00460 pycom15g00380 pycom15g00390
rosa_chinensis	RchiOBHm_Chr6g0303831
rosa_laevigata	RLG00000011040
rosa_multiflora	Rmu_co8307379.1_g000001 Rmu_sc0012878.1_g000001 Rmu_sc0022895.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164370
rosa_rugosa	Rorug06G0325200
rosa_samantha	Rh6AG439500 Rh6BG463500 Rh6CG451800 Rh6DG438700
rosa_wichuraiana	Rw6G038050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	155, 203
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	2 cut(s)	57, 91
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	16, 128
AjnI	CCWGG	2 cut(s)	151, 254
Aor13HI	TCCGGA	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	185
BanI	GGYRCC	2 cut(s)	155, 203
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	173, 197
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	2 cut(s)	153, 256
BclI	TGATCA	1 cut(s)	265
BfmI	CTRYAG	1 cut(s)	118
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	153, 256
BmiI	GGNNCC	2 cut(s)	157, 205
BmrFI	CCNGG	2 cut(s)	153, 256
BmsI	GCATC	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	211
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	153, 256
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	46
BshNI	GGYRCC	2 cut(s)	155, 203
BsiSI	CCGG	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	144
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	2 cut(s)	57, 91
BspCNI	CTCAG	1 cut(s)	219
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	157, 205
BspT107I	GGYRCC	2 cut(s)	155, 203
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	2 cut(s)	153, 256
Bst4CI	ACNGT	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	227
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstNI	CCWGG	2 cut(s)	153, 256
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	151, 254
BstSFI	CTRYAG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	1 cut(s)	188
CviKI_1	RGCY	1 cut(s)	188
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	227
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	201
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	151, 254
EcoT14I	CCWWGG	1 cut(s)	169
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	1 cut(s)	253
FaiI	YATR	3 cut(s)	241, 251, 288
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	60
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	159
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	2 cut(s)	212, 273
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	142, 296
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
Kpn2I	TCCGGA	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	283
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	3 cut(s)	97, 100, 194
MluCI	AATT	1 cut(s)	11
Mly113I	GGCGCC	1 cut(s)	156
MnlI	CCTC	3 cut(s)	92, 206, 229
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	153, 256
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	2 cut(s)	153, 256
NarI	GGCGCC	1 cut(s)	156
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	2 cut(s)	157, 205
NmuCI	GTSAC	1 cut(s)	173
PctI	GAATGC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	61
PluTI	GGCGCC	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	151, 254
PspEI	GGTNACC	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	151, 254
PspN4I	GGNNCC	2 cut(s)	157, 205
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	304
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	153, 256
SetI	ASST	6 cut(s)	99, 175, 198, 240, 260, 285
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	118
SfoI	GGCGCC	1 cut(s)	157
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	2 cut(s)	57, 91
SspDI	GGCGCC	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	151, 254
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	285
TasI	AATT	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	304
Tru9I	TTAA	1 cut(s)	304
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.