Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004066

Physical Location & Seq

Genomic Coordinates Reverse (-)

61545038 .. 61546853

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG438700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1728 bp

ATGGAAAACCCAGACAACACAAAAGCCACAAGATCACCACCACCTCCGCCGCCGCAACAACCAGACCCCAAGAAGCTCAAAATGTCCACCACCACCACCGACGACGAAGAAACCGCCGCCACCGCCCAAAAGCAACGCATCAAACGCCGCAAGGTCGCAATCTTCTTCGCCTACTGCGGCGTCGGATACCAAGGAATGCAAAAGAACCCCGGCGCCAAGACCATCGAAGGCGACCTCGAAGAAGCCCTCTACCTCTCCGGCGCGGTCCCCGAGCAGGACCGCAACAACCCTAAGCGTTATGACTGGGCCCGCTCGGCCCGTACCGACAAGGGCGTCAGCGCCGTGGGCCAGGTCGTATCGGGCCGGTTCTATGTCGACCCGCCGGGGTTCGTGGACCGCCTCAATTCGAACCTCTGCCCGCAAATTCGGATTTTCGGGTACAAGCGCGTGACGGCGTCGTTTAATGCGAAGAAGTTCTGTGATCGGAGAAGGTATGTTTATCTTATTCCTGTGTTTGCTCTTGATCCTAGTGCCCATAGGGATAGAGAGAGTGTTAAGGCGAGTTTGGGGTCTGATGAGGAGTTTGTGAAGTGCTTGGAGTGCTCCGATAGGGGGCGGAAAGTCGGTGGATTGATGGGTAAGCGCACTTATGAATTGAGAGGTGATAGTTCGAATTCGGAATCTGTAAATGGAGGAATTAGCACAAATGATGATTCTCATATGAAAAACGACATTGCCAATGTTTCTGAAGTTGAGGTGGTTGCCAATGCGGATATGAACTCTGAGGTCAGTGGAGAAGAGAAGCAGGTCGTGAAGGGAAGTGGGTTTTGTTATGGTGAGAAGGAGAAGGAAAGGTTTAATAGAATCTTGAGTTGTTACCAGGGTACTCACAACTTCCATAACTTCACCACTAGAACTAAGGCTGAAGACCCTGCTGCAACGAGATACATTATTTCGTTCACTGCAAATACCACGGTTACAGTTGAGGGTATTGAATTTGTGAAGTGTGAGGTCGTGGGGCAGAGCTTCATGCTTCATCAGATTAGGAAGTTAATTGGGCTGGCAGTGGCAATCATGAGGAACTGTGCTCCTGAGTCGTTGTTAGAAAGAGCTTTGCAAAAGGATGTTAACGTCAATGTGCCTACGGCTCCTGAGGTTGGTTTGTACTTGGATGAGTGCTTCTTCTCATCATATAACCAGAAATGGGGAGACACTCATGAAGAAGTGTCGATGAAAGACTATGAAGCAGAGGCAGAAGCTTTCAAAATGAAGCATATTTACACTCATATTGGAGCCACTGAGCATAAAGAAGGTGTTGTGGGTCTCTGGTTGCACTCTCTTAACCACCGCAATTATCCGGATTTAGGTGCTGACAACAATGGAGACACCAGCATCGAAAGGACTGCTGATATCTCCAGTGCTGACAACAATGGGGATACCAGCAACGGAAAGACTGCATATATCGCCAGTGCTGACAACAATGGAGACACCAGCAACGGAAAGACTGCCAATATCTCCAGTGCTGACAACAATGGAGACACCAGCAACGGAAAGACTGCTGATATCTTCAGTGCTGACAACAACGGAGACACCAGCATTGAAAAGACCGCCGATATCTCCAGTGCTGACAACAATGGGGATACCAGCAATGGAAAGACTGCGTATATCGCCACTGCTGACAACAATGGAGACACCAGCAAGGCTGATATCTCCAATGTCGCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000959 GO:0000963 GO:0001522 GO:0002153 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070525 GO:0070900 GO:0070902 GO:0071704 GO:0090304 GO:0090646 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

575

Amino Acids

62.96

Weight (kDa)

5.43

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_1	PF01416	293 - 395	4.2e-12	tRNA pseudouridine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20370 AT1G76120 AT1G76120
fragaria_vesca	FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_5g07491
malus_domestica	MD15G1005300.v1.1 MD15G1005400.v1.1
prunus_persica	Prupe.1G357900_v2.0.a1
pyrus_communis	pycom08g00460 pycom15g00380 pycom15g00390
rosa_chinensis	RchiOBHm_Chr6g0303831
rosa_laevigata	RLG00000011040
rosa_multiflora	Rmu_co8307379.1_g000001 Rmu_sc0012878.1_g000001 Rmu_sc0022895.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164370
rosa_rugosa	Rorug06G0325200
rosa_samantha	Rh6AG439500 Rh6BG463500 Rh6CG451800 Rh6DG438700
rosa_wichuraiana	Rw6G038050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	796
AccB1I	GGYRCC	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	2 cut(s)	263, 447
AccIII	TCCGGA	1 cut(s)	1357
AclWI	GGATC	1 cut(s)	518
AcsI	RAATTY	3 cut(s)	423, 673, 995
AcuI	CTGAAG	3 cut(s)	768, 945, 1552
AcyI	GRCGYC	4 cut(s)	180, 213, 333, 455
AfaI	GTAC	4 cut(s)	322, 440, 886, 1166
AfiI	CCNNNNNNNGG	5 cut(s)	274, 612, 1157, 1204, 1364
AgsI	TTSAA	3 cut(s)	995, 1264, 1601
AjnI	CCWGG	2 cut(s)	348, 879
AluBI	AGCT	4 cut(s)	76, 1026, 1112, 1259
AluI	AGCT	4 cut(s)	76, 1026, 1112, 1259
Alw21I	GWGCWC	2 cut(s)	605, 1090
Alw26I	GTCTC	7 cut(s)	1203, 1328, 1377, 1479, 1530, 1581, 1683
AlwI	GGATC	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	1357
AoxI	GGCC	4 cut(s)	306, 315, 346, 361
ApaI	GGGCCC	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	935
ApoI	RAATTY	3 cut(s)	423, 673, 995
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	5 cut(s)	215, 263, 341, 447, 645
AspS9I	GGNCC	8 cut(s)	265, 277, 306, 307, 316, 346, 361, 394
AsuC2I	CCSGG	2 cut(s)	210, 384
AsuHPI	GGTGA	4 cut(s)	27, 674, 848, 898
AsuII	TTCGAA	2 cut(s)	407, 671
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	3 cut(s)	265, 277, 394
AxyI	CCTNAGG	1 cut(s)	1152
BaeGI	GKGCMC	2 cut(s)	310, 535
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	310
BarI	GAAGNNNNNNTAC	2 cut(s)	1262, 1294
BbsI	GAAGAC	1 cut(s)	933
Bbv12I	GWGCWC	2 cut(s)	605, 1090
BbvI	GCAGC	1 cut(s)	922
BccI	CCATC	2 cut(s)	230, 628
BceAI	ACGGC	3 cut(s)	326, 468, 1161
BcgI	CGANNNNNNTGC	2 cut(s)	1385, 1419
BciT130I	CCWGG	2 cut(s)	350, 881
BciVI	GTATCC	3 cut(s)	179, 1429, 1633
BcnI	CCSGG	2 cut(s)	210, 384
BcoDI	GTCTC	7 cut(s)	1203, 1328, 1377, 1479, 1530, 1581, 1683
BfaI	CTAG	2 cut(s)	528, 912
BfoI	RGCGCY	2 cut(s)	216, 342
BfuAI	ACCTGC	1 cut(s)	796
BfuI	GTATCC	3 cut(s)	179, 1429, 1633
BglI	GCCNNNNNGGC	1 cut(s)	314
BisI	GCNGC	6 cut(s)	50, 53, 117, 148, 178, 936
BlsI	GCNGC	6 cut(s)	51, 54, 118, 149, 179, 937
Bme1390I	CCNGG	4 cut(s)	210, 350, 384, 881
Bme18I	GGWCC	3 cut(s)	265, 277, 394
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	8 cut(s)	265, 277, 306, 307, 316, 346, 361, 394
BmiI	GGNNCC	5 cut(s)	214, 267, 308, 1149, 1294
BmrFI	CCNGG	4 cut(s)	210, 350, 384, 881
BmrI	ACTGGG	2 cut(s)	313, 1717
BmsI	GCATC	2 cut(s)	147, 1401
BmuI	ACTGGG	2 cut(s)	313, 1717
BpiI	GAAGAC	1 cut(s)	933
BpmI	CTGGAG	3 cut(s)	1399, 1501, 1603
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	2 cut(s)	407, 671
BpuEI	CTTGAG	1 cut(s)	889
BpuMI	CCSGG	2 cut(s)	210, 384
BsaHI	GRCGYC	4 cut(s)	180, 213, 333, 455
BsaI	GGTCTC	1 cut(s)	1328
BsaJI	CCNNGG	6 cut(s)	190, 208, 342, 383, 880, 972
BsaWI	WCCGGW	1 cut(s)	1357
Bsc4I	CCNNNNNNNGG	5 cut(s)	274, 612, 1157, 1204, 1364
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	6 cut(s)	308, 1416, 1467, 1518, 1620, 1723
Bse21I	CCTNAGG	1 cut(s)	1152
Bse3DI	GCAATG	2 cut(s)	732, 1654
BseAI	TCCGGA	1 cut(s)	1357
BseBI	CCWGG	2 cut(s)	350, 881
BseDI	CCNNGG	6 cut(s)	190, 208, 342, 383, 880, 972
BseGI	GGATG	2 cut(s)	1129, 1177
BseLI	CCNNNNNNNGG	5 cut(s)	274, 612, 1157, 1204, 1364
BseMI	GCAATG	2 cut(s)	732, 1654
BseMII	CTCAG	4 cut(s)	774, 1083, 1143, 1290
BseNI	ACTGG	6 cut(s)	308, 1416, 1467, 1518, 1620, 1723
BseRI	GAGGAG	1 cut(s)	593
BseSI	GKGCMC	2 cut(s)	310, 535
BseXI	GCAGC	1 cut(s)	922
Bsh1236I	CGCG	2 cut(s)	263, 447
BshFI	GGCC	4 cut(s)	308, 317, 348, 363
BshNI	GGYRCC	1 cut(s)	212
BsiHKAI	GWGCWC	2 cut(s)	605, 1090
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	5 cut(s)	210, 258, 364, 383, 1358
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	5 cut(s)	274, 612, 1157, 1204, 1364
BsmAI	GTCTC	7 cut(s)	1203, 1328, 1377, 1479, 1530, 1581, 1683
BsmFI	GGGAC	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	4 cut(s)	308, 317, 348, 363
Bso31I	GGTCTC	1 cut(s)	1328
BsoBI	CYCGRG	1 cut(s)	269
Bsp119I	TTCGAA	2 cut(s)	407, 671
Bsp120I	GGGCCC	1 cut(s)	306
Bsp1286I	GDGCHC	4 cut(s)	310, 535, 605, 1090
Bsp13I	TCCGGA	1 cut(s)	1357
Bsp143I	GATC	3 cut(s)	32, 481, 523
BspANI	GGCC	4 cut(s)	308, 317, 348, 363
BspCNI	CTCAG	4 cut(s)	775, 1084, 1144, 1291
BspEI	TCCGGA	1 cut(s)	1357
BspFNI	CGCG	2 cut(s)	263, 447
BspHI	TCATGA	2 cut(s)	1074, 1216
BspLI	GGNNCC	5 cut(s)	214, 267, 308, 1149, 1294
BspMI	ACCTGC	1 cut(s)	796
BspPI	GGATC	1 cut(s)	518
BspT104I	TTCGAA	2 cut(s)	407, 671
BspT107I	GGYRCC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	1328
BsrBI	CCGCTC	1 cut(s)	312
BsrDI	GCAATG	2 cut(s)	732, 1654
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	6 cut(s)	308, 1416, 1467, 1518, 1620, 1723
BssAI	RCCGGY	1 cut(s)	363
BssECI	CCNNGG	6 cut(s)	190, 208, 342, 383, 880, 972
BssMI	GATC	3 cut(s)	32, 481, 523
BssNI	GRCGYC	4 cut(s)	180, 213, 333, 455
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	350, 881
Bst4CI	ACNGT	3 cut(s)	976, 982, 1085
Bst6I	CTCTTC	1 cut(s)	792
BstACI	GRCGYC	4 cut(s)	180, 213, 333, 455
BstBI	TTCGAA	2 cut(s)	407, 671
BstC8I	GCNNGC	3 cut(s)	310, 419, 1062
BstDEI	CTNAG	6 cut(s)	291, 783, 918, 1092, 1152, 1299
BstDSI	CCRYGG	2 cut(s)	342, 972
BstF5I	GGATG	2 cut(s)	1129, 1177
BstFNI	CGCG	2 cut(s)	263, 447
BstH2I	RGCGCY	2 cut(s)	216, 342
BstHHI	GCGC	5 cut(s)	215, 263, 341, 447, 645
BstKTI	GATC	3 cut(s)	35, 484, 526
BstMAI	GTCTC	7 cut(s)	1203, 1328, 1377, 1479, 1530, 1581, 1683
BstMBI	GATC	3 cut(s)	32, 481, 523
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 144, 314, 345, 600, 1463, 1667
BstNI	CCWGG	2 cut(s)	350, 881
BstSCI	CCNGG	4 cut(s)	208, 348, 382, 879
BstSLI	GKGCMC	2 cut(s)	310, 535
BstUI	CGCG	2 cut(s)	263, 447
BstV1I	GCAGC	1 cut(s)	922
BstV2I	GAAGAC	1 cut(s)	933
Bsu36I	CCTNAGG	1 cut(s)	1152
BsuI	GTATCC	3 cut(s)	179, 1429, 1633
BsuRI	GGCC	4 cut(s)	308, 317, 348, 363
BtgI	CCRYGG	2 cut(s)	342, 972
BtsCI	GGATG	2 cut(s)	1129, 1177
BtsI	GCAGTG	3 cut(s)	960, 1071, 1671
BveI	ACCTGC	1 cut(s)	796
Cac8I	GCNNGC	3 cut(s)	310, 419, 1062
CciI	TCATGA	2 cut(s)	1074, 1216
CfoI	GCGC	5 cut(s)	215, 263, 341, 447, 645
Cfr10I	RCCGGY	1 cut(s)	363
Cfr13I	GGNCC	8 cut(s)	265, 277, 306, 307, 316, 346, 361, 394
CseI	GACGC	3 cut(s)	169, 322, 444
Csp6I	GTAC	4 cut(s)	321, 439, 885, 1165
CviAII	CATG	3 cut(s)	1030, 1075, 1217
CviQI	GTAC	4 cut(s)	321, 439, 885, 1165
DdeI	CTNAG	6 cut(s)	291, 783, 918, 1092, 1152, 1299
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	3 cut(s)	34, 483, 525
DpnII	GATC	3 cut(s)	32, 481, 523
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
EciI	GGCGGA	2 cut(s)	36, 631
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	1328
Eco32I	GATATC	4 cut(s)	1411, 1564, 1615, 1708
Eco47I	GGWCC	3 cut(s)	265, 277, 394
Eco57I	CTGAAG	3 cut(s)	768, 945, 1552
Eco81I	CCTNAGG	1 cut(s)	1152
Eco88I	CYCGRG	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	673
EcoRII	CCWGG	2 cut(s)	348, 879
EcoRV	GATATC	4 cut(s)	1411, 1564, 1615, 1708
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	310
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	3 cut(s)	1033, 1078, 1220
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	3 cut(s)	1029, 1074, 1216
FauI	CCCGC	3 cut(s)	317, 387, 426
FauNDI	CATATG	1 cut(s)	720
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	6 cut(s)	50, 53, 117, 148, 178, 936
FokI	GGATG	2 cut(s)	1136, 1184
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	6 cut(s)	50, 53, 117, 148, 178, 936
FspBI	CTAG	2 cut(s)	528, 912
GlaI	GCGC	5 cut(s)	214, 262, 340, 446, 644
GluI	GCNGC	6 cut(s)	50, 53, 117, 148, 178, 936
GsuI	CTGGAG	3 cut(s)	1399, 1501, 1603
HaeII	RGCGCY	2 cut(s)	216, 342
HaeIII	GGCC	4 cut(s)	308, 317, 348, 363
HapII	CCGG	5 cut(s)	210, 258, 364, 383, 1358
HgaI	GACGC	3 cut(s)	169, 322, 444
HhaI	GCGC	5 cut(s)	215, 263, 341, 447, 645
Hin1I	GRCGYC	4 cut(s)	180, 213, 333, 455
Hin1II	CATG	3 cut(s)	1033, 1078, 1220
Hin6I	GCGC	5 cut(s)	213, 261, 339, 445, 643
HinP1I	GCGC	5 cut(s)	213, 261, 339, 445, 643
HincII	GTYRAC	2 cut(s)	376, 1129
HindII	GTYRAC	2 cut(s)	376, 1129
HindIII	AAGCTT	1 cut(s)	1257
HinfI	GANTC	4 cut(s)	680, 713, 864, 1094
HpaI	GTTAAC	1 cut(s)	1129
HpaII	CCGG	5 cut(s)	210, 258, 364, 383, 1358
HphI	GGTGA	4 cut(s)	27, 674, 848, 898
Hpy166II	GTNNAC	5 cut(s)	87, 376, 394, 960, 1129
Hpy188I	TCNGA	9 cut(s)	185, 429, 486, 574, 607, 679, 748, 784, 1041
Hpy188III	TCNNGA	8 cut(s)	521, 811, 868, 1075, 1091, 1151, 1217, 1358
Hpy8I	GTNNAC	5 cut(s)	87, 376, 394, 960, 1129
Hpy99I	CGWCG	4 cut(s)	104, 107, 185, 460
HpyAV	CCTTC	6 cut(s)	221, 483, 808, 835, 841, 1304
HpyCH4III	ACNGT	3 cut(s)	976, 982, 1085
HpyCH4IV	ACGT	1 cut(s)	1131
HpyCH4V	TGCA	6 cut(s)	199, 938, 965, 1117, 1333, 1457
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 144, 314, 345, 600, 1463, 1667
HpyF3I	CTNAG	6 cut(s)	291, 783, 918, 1092, 1152, 1299
HpySE526I	ACGT	1 cut(s)	1131
Hsp92I	GRCGYC	4 cut(s)	180, 213, 333, 455
Hsp92II	CATG	3 cut(s)	1033, 1078, 1220
HspAI	GCGC	5 cut(s)	213, 261, 339, 445, 643
KasI	GGCGCC	1 cut(s)	212
Kpn2I	TCCGGA	1 cut(s)	1357
KspAI	GTTAAC	1 cut(s)	1129
Kzo9I	GATC	3 cut(s)	32, 481, 523
LmnI	GCTCC	4 cut(s)	608, 1093, 1153, 1292
Lsp1109I	GCAGC	1 cut(s)	922
LweI	GCATC	2 cut(s)	147, 1401
MaeI	CTAG	2 cut(s)	528, 912
MaeII	ACGT	1 cut(s)	1131
MaeIII	GTNAC	3 cut(s)	448, 875, 976
MalI	GATC	3 cut(s)	34, 483, 525
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	3 cut(s)	32, 481, 523
MhlI	GDGCHC	4 cut(s)	310, 535, 605, 1090
MluCI	AATT	8 cut(s)	403, 423, 653, 673, 696, 995, 1053, 1351
Mly113I	GGCGCC	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	1103
MmeI	TCCRAC	1 cut(s)	163
MroI	TCCGGA	1 cut(s)	1357
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	6 cut(s)	462, 555, 858, 1052, 1128, 1341
MspI	CCGG	5 cut(s)	210, 258, 364, 383, 1358
MspR9I	CCNGG	4 cut(s)	210, 350, 384, 881
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	350, 881
MvnI	CGCG	2 cut(s)	263, 447
MwoI	GCNNNNNNNGC	7 cut(s)	122, 144, 314, 345, 600, 1463, 1667
NarI	GGCGCC	1 cut(s)	213
NciI	CCSGG	2 cut(s)	210, 384
NdeI	CATATG	1 cut(s)	720
NdeII	GATC	3 cut(s)	32, 481, 523
NlaIII	CATG	3 cut(s)	1033, 1078, 1220
NlaIV	GGNNCC	5 cut(s)	214, 267, 308, 1149, 1294
NmeAIII	GCCGAG	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	448
NspV	TTCGAA	2 cut(s)	407, 671
PagI	TCATGA	2 cut(s)	1074, 1216
PcsI	WCGNNNNNNNCGW	1 cut(s)	464
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	3 cut(s)	680, 713, 864
PflFI	GACNNNGTC	1 cut(s)	454
PkrI	GCNGC	6 cut(s)	51, 54, 118, 149, 179, 937
PleI	GAGTC	1 cut(s)	1102
PluTI	GGCGCC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	1102
Psp6I	CCWGG	2 cut(s)	348, 879
PspGI	CCWGG	2 cut(s)	348, 879
PspN4I	GGNNCC	5 cut(s)	214, 267, 308, 1149, 1294
PspOMI	GGGCCC	1 cut(s)	306
PspPI	GGNCC	8 cut(s)	265, 277, 306, 307, 316, 346, 361, 394
PsyI	GACNNNGTC	1 cut(s)	454
RsaI	GTAC	4 cut(s)	322, 440, 886, 1166
RsaNI	GTAC	4 cut(s)	321, 439, 885, 1165
SalI	GTCGAC	1 cut(s)	374
SaqAI	TTAA	6 cut(s)	462, 555, 858, 1052, 1128, 1341
SatI	GCNGC	6 cut(s)	50, 53, 117, 148, 178, 936
Sau3AI	GATC	3 cut(s)	32, 481, 523
Sau96I	GGNCC	8 cut(s)	265, 277, 306, 307, 316, 346, 361, 394
SchI	GAGTC	1 cut(s)	1103
ScrFI	CCNGG	4 cut(s)	210, 350, 384, 881
SduI	GDGCHC	4 cut(s)	310, 535, 605, 1090
SfaNI	GCATC	2 cut(s)	147, 1401
SfiI	GGCCNNNNNGGCC	1 cut(s)	314
SfoI	GGCGCC	1 cut(s)	214
SfuI	TTCGAA	2 cut(s)	407, 671
SinI	GGWCC	3 cut(s)	265, 277, 394
SmlI	CTYRAG	1 cut(s)	868
SmoI	CTYRAG	1 cut(s)	868
Sse9I	AATT	8 cut(s)	403, 423, 653, 673, 696, 995, 1053, 1351
SspDI	GGCGCC	1 cut(s)	212
SspMI	CTAG	2 cut(s)	528, 912
StyD4I	CCNGG	4 cut(s)	208, 348, 382, 879
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	3 cut(s)	976, 982, 1085
TaiI	ACGT	1 cut(s)	1134
TaqI	TCGA	7 cut(s)	225, 237, 375, 407, 671, 1229, 1395
TasI	AATT	8 cut(s)	403, 423, 653, 673, 696, 995, 1053, 1351
TatI	WGTACW	1 cut(s)	1164
TauI	GCSGC	5 cut(s)	52, 55, 119, 150, 180
TfiI	GAWTC	3 cut(s)	680, 713, 864
Tru1I	TTAA	6 cut(s)	462, 555, 858, 1052, 1128, 1341
Tru9I	TTAA	6 cut(s)	462, 555, 858, 1052, 1128, 1341
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	1 cut(s)	935
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	9 cut(s)	666, 737, 791, 1018, 1025, 1233, 1247, 1257, 1283
TspGWI	ACGGA	4 cut(s)	1461, 1512, 1563, 1599
Tth111I	GACNNNGTC	1 cut(s)	454
VpaK11BI	GGWCC	3 cut(s)	265, 277, 394
XapI	RAATTY	3 cut(s)	423, 673, 995
XmiI	GTMKAC	1 cut(s)	375
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	2 cut(s)	528, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.