pycom15g00390

f-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
247023 .. 251821
4799 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g00390.3

Sequence Viewer

Length: 1236 bp
ATGGAATTCGTTAAGTGTGAAGTTGTAGGGCAGAGCTTCATGCTTCATCAGATTAGGAAGATGATCGAGCTTGCGGTGGCAATCTTCAGGGGATGTGCTCCAGAGTCATTGCTCGAAAGAGCACTGCAAAAGGATGTTAACATCAATGTGCCGACAGCTCCTGAGGTGGGATTGTACTTGGATGAGTGCTTCTTTTCGTCGTATAACCAGAAATGGGGAGACAGTCATGAAGAGCTGTCGATGAAAGGCTATGAACAAGAGGCAGAAGACTTCAAGATGAAGCATATATACACTCACATAGCATCCACTGAGCATAAAGAAGGTGTTGTGGGTCTCTGGTTGCACTCCCTCAACCACCGTAACTATCCGGATTTAGGTCCTGCTGAGAACAATGGAAATACCAGCAGCGGAATAAGTGCTGATACGGGTAATGTCGTTGGGGTGGATTGGTGGGGTCCTTCGTGTCTACCCGCGAAAATAGGGGTGGATTGGACCCAACTACCACCAGAACTCGCCGAATCAATCTCCAAAAAGCTCACAATCTACGCCGACTACCTCCGATTCCGAGTTGTGTGTCACAGCTGGCGAGCCTCCGTCCCCAAAACCCCGCACCACCTCCCTCCCCAGCTCCCCTGGCTGATGCTCCCCCAATCCCAGCCCAACCAATCCCACCGCGCCTTCTTCAACCTCTCCAACAGCAGAGTCCACTTCCTCCACCTTCCAGAAGCTTCTCACCGCAAGCGCCGCTGCGGCTCCTCCCACGGATGGCTCGTCATCCTCGACGAAACACCTTCCGTCCTCCTTGTTAACCCCCTCACGCGCGCCAAGCGCCACCTCCCTCCGCTCTCCACCTTCCCCAACGTTGTTCGATTTGATTACTCCGAAGTTGGCCGAGAATACGCGCTCCGATCTCCGTCTGGTGACGTCTATACGTGCAGCCTGACGCAAATGCGCGATTCGTTTCTGAAAAAGGTCGTCCTTTCATCTAGTTCTCTGGAAGCCAACGGTTTCACTTCCACAGCCGTAGCGATTGTCAATCAAACCGGTGACTTGGTGTTTTGCAGGGAAGGAGACCTGTCTTGGACTTTGATCGACGGCGCACGGTCGTATTCCGAGGATGTCATATCTGTCAACGGCTTGTTTTACGCCGTCGACAAGAAGGGAACCGTGGTAGTGTGCGATGCTCTAATGGTCCGTCTCTGTCTAGGGTTGGGATTATCCGAACGCCGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

412

Amino Acids

46.09

Weight (kDa)

6.47

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 927
AccBSI CCGCTC 1 cut(s) 844
AccI GTMKAC 2 cut(s) 466, 1152
AccII CGCG 6 cut(s) 473, 675, 820, 822, 902, 954
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 9 cut(s) 74, 408, 471, 608, 673, 736, 745, 750, 842
AclI AACGTT 1 cut(s) 861
AcoI YGGCCR 1 cut(s) 889
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 70
AcyI GRCGYC 1 cut(s) 924
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 4 cut(s) 167, 214, 374, 765
AgeI ACCGGT 1 cut(s) 1043
AgsI TTSAA 2 cut(s) 274, 685
AjnI CCWGG 1 cut(s) 632
AluBI AGCT 8 cut(s) 36, 70, 158, 235, 535, 582, 628, 728
AluI AGCT 8 cut(s) 36, 70, 158, 235, 535, 582, 628, 728
Alw21I GWGCWC 2 cut(s) 100, 124
Alw26I GTCTC 5 cut(s) 213, 338, 1065, 1202, 1224
AlwNI CAGNNNCTG 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 367
AoxI GGCC 1 cut(s) 889
ApeKI GCWGC 3 cut(s) 405, 747, 936
ApoI RAATTY 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 1043
AspLEI GCGC 8 cut(s) 677, 744, 822, 824, 831, 904, 954, 1100
AspS9I GGNCC 4 cut(s) 377, 455, 492, 1192
AsuHPI GGTGA 3 cut(s) 725, 932, 1058
AvaII GGWCC 4 cut(s) 377, 455, 492, 1192
AxyI CCTNAGG 1 cut(s) 162
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 2 cut(s) 100, 124
BbvI GCAGC 3 cut(s) 417, 734, 948
BccI CCATC 1 cut(s) 759
BceAI ACGGC 4 cut(s) 1007, 1111, 1133, 1150
BciT130I CCWGG 1 cut(s) 634
BcoDI GTCTC 5 cut(s) 213, 338, 1065, 1202, 1224
BfaI CTAG 3 cut(s) 987, 1205, 1234
BfoI RGCGCY 2 cut(s) 745, 832
BglI GCCNNNNNGGC 1 cut(s) 750
BisI GCNGC 5 cut(s) 406, 745, 748, 751, 937
BlsI GCNGC 5 cut(s) 407, 746, 749, 752, 938
Bme1390I CCNGG 1 cut(s) 634
Bme18I GGWCC 4 cut(s) 377, 455, 492, 1192
BmgT120I GGNCC 4 cut(s) 377, 455, 492, 1192
BmiI GGNNCC 4 cut(s) 456, 494, 754, 1165
BmrFI CCNGG 1 cut(s) 634
BmsI GCATC 3 cut(s) 311, 630, 1171
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 933
BsaHI GRCGYC 1 cut(s) 924
BsaI GGTCTC 2 cut(s) 338, 1065
BsaJI CCNNGG 4 cut(s) 632, 760, 1113, 1167
BsaWI WCCGGW 2 cut(s) 367, 1043
Bsc4I CCNNNNNNNGG 4 cut(s) 167, 214, 374, 765
Bse118I RCCGGY 1 cut(s) 1043
Bse21I CCTNAGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 107
BseAI TCCGGA 1 cut(s) 367
BseBI CCWGG 1 cut(s) 634
BseDI CCNNGG 4 cut(s) 632, 760, 1113, 1167
BseGI GGATG 7 cut(s) 98, 139, 187, 302, 770, 774, 1123
BseLI CCNNNNNNNGG 4 cut(s) 167, 214, 374, 765
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 3 cut(s) 153, 300, 375
BsePI GCGCGC 1 cut(s) 820
BseRI GAGGAG 1 cut(s) 745
BseXI GCAGC 3 cut(s) 417, 734, 948
BseYI CCCAGC 2 cut(s) 624, 654
BsgI GTGCAG 1 cut(s) 955
Bsh1236I CGCG 6 cut(s) 473, 675, 820, 822, 902, 954
Bsh1285I CGRYCG 1 cut(s) 1106
BshFI GGCC 1 cut(s) 891
BshTI ACCGGT 1 cut(s) 1043
BsiEI CGRYCG 1 cut(s) 1106
BsiHKAI GWGCWC 2 cut(s) 100, 124
BsiSI CCGG 2 cut(s) 368, 1044
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 4 cut(s) 167, 214, 374, 765
BsmAI GTCTC 5 cut(s) 213, 338, 1065, 1202, 1224
BsmBI CGTCTC 1 cut(s) 1202
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 1 cut(s) 891
Bso31I GGTCTC 2 cut(s) 338, 1065
Bsp1286I GDGCHC 2 cut(s) 100, 124
Bsp13I TCCGGA 1 cut(s) 367
Bsp143I GATC 3 cut(s) 63, 908, 1089
BspACI CCGC 9 cut(s) 74, 408, 471, 608, 673, 736, 745, 750, 842
BspANI GGCC 1 cut(s) 891
BspCNI CTCAG 3 cut(s) 154, 301, 376
BspEI TCCGGA 1 cut(s) 367
BspFNI CGCG 6 cut(s) 473, 675, 820, 822, 902, 954
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 4 cut(s) 456, 494, 754, 1165
BspQI GCTCTTC 1 cut(s) 225
BspTNI GGTCTC 2 cut(s) 338, 1065
BsrBI CCGCTC 1 cut(s) 844
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 1043
BssAI RCCGGY 1 cut(s) 1043
BssECI CCNNGG 4 cut(s) 632, 760, 1113, 1167
BssHII GCGCGC 1 cut(s) 820
BssMI GATC 3 cut(s) 63, 908, 1089
BssNI GRCGYC 1 cut(s) 924
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 5 cut(s) 224, 359, 1007, 1104, 1168
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 924
BstBAI YACGTR 1 cut(s) 933
BstC8I GCNNGC 5 cut(s) 72, 584, 588, 740, 822
BstDEI CTNAG 3 cut(s) 162, 309, 384
BstDSI CCRYGG 2 cut(s) 760, 1167
BstF5I GGATG 7 cut(s) 98, 139, 187, 302, 770, 774, 1123
BstFNI CGCG 6 cut(s) 473, 675, 820, 822, 902, 954
BstH2I RGCGCY 2 cut(s) 745, 832
BstHHI GCGC 8 cut(s) 677, 744, 822, 824, 831, 904, 954, 1100
BstKTI GATC 3 cut(s) 66, 911, 1092
BstMAI GTCTC 5 cut(s) 213, 338, 1065, 1202, 1224
BstMBI GATC 3 cut(s) 63, 908, 1089
BstMCI CGRYCG 1 cut(s) 1106
BstMWI GCNNNNNNNGC 5 cut(s) 634, 744, 750, 826, 828
BstNI CCWGG 1 cut(s) 634
BstSCI CCNGG 1 cut(s) 632
BstUI CGCG 6 cut(s) 473, 675, 820, 822, 902, 954
BstV1I GCAGC 3 cut(s) 417, 734, 948
BstV2I GAAGAC 1 cut(s) 273
Bsu36I CCTNAGG 1 cut(s) 162
BsuRI GGCC 1 cut(s) 891
BtgI CCRYGG 2 cut(s) 760, 1167
BtgZI GCGATG 1 cut(s) 1194
BtsCI GGATG 7 cut(s) 98, 139, 187, 302, 770, 774, 1123
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 2 cut(s) 122, 306
Cac8I GCNNGC 5 cut(s) 72, 584, 588, 740, 822
CaiI CAGNNNCTG 1 cut(s) 161
CciI TCATGA 1 cut(s) 226
CfoI GCGC 8 cut(s) 677, 744, 822, 824, 831, 904, 954, 1100
Cfr10I RCCGGY 1 cut(s) 1043
Cfr13I GGNCC 4 cut(s) 377, 455, 492, 1192
CseI GACGC 1 cut(s) 952
Csp6I GTAC 1 cut(s) 175
CspAI ACCGGT 1 cut(s) 1043
CviAII CATG 2 cut(s) 40, 227
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 3 cut(s) 162, 309, 384
DpnI GATC 3 cut(s) 65, 910, 1091
DpnII GATC 3 cut(s) 63, 908, 1089
EaeI YGGCCR 1 cut(s) 889
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco31I GGTCTC 2 cut(s) 338, 1065
Eco47I GGWCC 4 cut(s) 377, 455, 492, 1192
Eco57I CTGAAG 1 cut(s) 70
Eco81I CCTNAGG 1 cut(s) 162
EcoO109I RGGNCCY 2 cut(s) 377, 455
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 632
Esp3I CGTCTC 1 cut(s) 1202
FaeI CATG 2 cut(s) 43, 230
FaqI GGGAC 1 cut(s) 581
FatI CATG 2 cut(s) 39, 226
FauI CCCGC 2 cut(s) 478, 615
FblI GTMKAC 2 cut(s) 466, 1152
Fnu4HI GCNGC 5 cut(s) 406, 745, 748, 751, 937
FokI GGATG 7 cut(s) 105, 146, 194, 289, 761, 777, 1130
Fsp4HI GCNGC 5 cut(s) 406, 745, 748, 751, 937
FspBI CTAG 3 cut(s) 987, 1205, 1234
GlaI GCGC 8 cut(s) 676, 743, 821, 823, 830, 903, 953, 1099
GluI GCNGC 5 cut(s) 406, 745, 748, 751, 937
GsaI CCCAGC 2 cut(s) 628, 658
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 2 cut(s) 745, 832
HaeIII GGCC 1 cut(s) 891
HapII CCGG 2 cut(s) 368, 1044
HgaI GACGC 1 cut(s) 952
HhaI GCGC 8 cut(s) 677, 744, 822, 824, 831, 904, 954, 1100
Hin1I GRCGYC 1 cut(s) 924
Hin1II CATG 2 cut(s) 43, 230
Hin6I GCGC 8 cut(s) 675, 742, 820, 822, 829, 902, 952, 1098
HinP1I GCGC 8 cut(s) 675, 742, 820, 822, 829, 902, 952, 1098
HincII GTYRAC 4 cut(s) 139, 808, 1132, 1153
HindII GTYRAC 4 cut(s) 139, 808, 1132, 1153
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 5 cut(s) 104, 518, 561, 702, 956
HpaI GTTAAC 2 cut(s) 139, 808
HpaII CCGG 2 cut(s) 368, 1044
HphI GGTGA 3 cut(s) 725, 932, 1058
Hpy166II GTNNAC 6 cut(s) 139, 467, 706, 808, 1132, 1153
Hpy188I TCNGA 8 cut(s) 51, 560, 566, 883, 908, 966, 1114, 1222
Hpy188III TCNNGA 7 cut(s) 101, 161, 227, 274, 368, 722, 995
Hpy8I GTNNAC 6 cut(s) 139, 467, 706, 808, 1132, 1153
Hpy99I CGWCG 4 cut(s) 202, 785, 1097, 1154
HpyAV CCTTC 8 cut(s) 314, 468, 688, 728, 801, 862, 1061, 1153
HpyCH4III ACNGT 5 cut(s) 224, 359, 1007, 1104, 1168
HpyCH4IV ACGT 3 cut(s) 861, 924, 932
HpyCH4V TGCA 4 cut(s) 127, 343, 936, 1062
HpyF10VI GCNNNNNNNGC 5 cut(s) 634, 744, 750, 826, 828
HpyF3I CTNAG 3 cut(s) 162, 309, 384
HpySE526I ACGT 3 cut(s) 861, 924, 932
Hsp92I GRCGYC 1 cut(s) 924
Hsp92II CATG 2 cut(s) 43, 230
HspAI GCGC 8 cut(s) 675, 742, 820, 822, 829, 902, 952, 1098
Kpn2I TCCGGA 1 cut(s) 367
KspAI GTTAAC 2 cut(s) 139, 808
Kzo9I GATC 3 cut(s) 63, 908, 1089
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 6 cut(s) 103, 163, 633, 648, 758, 909
Lsp1109I GCAGC 3 cut(s) 417, 734, 948
LweI GCATC 3 cut(s) 311, 630, 1171
MaeI CTAG 3 cut(s) 987, 1205, 1234
MaeII ACGT 3 cut(s) 861, 924, 932
MaeIII GTNAC 4 cut(s) 359, 575, 920, 1046
MalI GATC 3 cut(s) 65, 910, 1091
MbiI CCGCTC 1 cut(s) 844
MboI GATC 3 cut(s) 63, 908, 1089
MboII GAAGA 5 cut(s) 70, 76, 242, 278, 673
MhlI GDGCHC 2 cut(s) 100, 124
MluCI AATT 1 cut(s) 5
MlyI GAGTC 2 cut(s) 113, 711
MmeI TCCRAC 1 cut(s) 717
MroI TCCGGA 1 cut(s) 367
MseI TTAA 3 cut(s) 12, 138, 807
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 3 cut(s) 408, 582, 747
MspI CCGG 2 cut(s) 368, 1044
MspR9I CCNGG 1 cut(s) 634
MvaI CCWGG 1 cut(s) 634
MvnI CGCG 6 cut(s) 473, 675, 820, 822, 902, 954
MwoI GCNNNNNNNGC 5 cut(s) 634, 744, 750, 826, 828
NdeII GATC 3 cut(s) 63, 908, 1089
NlaIII CATG 2 cut(s) 43, 230
NlaIV GGNNCC 4 cut(s) 456, 494, 754, 1165
NmeAIII GCCGAG 1 cut(s) 917
NmuCI GTSAC 3 cut(s) 575, 920, 1046
PagI TCATGA 1 cut(s) 226
PauI GCGCGC 1 cut(s) 820
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 2 cut(s) 768, 777
PfeI GAWTC 3 cut(s) 518, 561, 956
PinAI ACCGGT 1 cut(s) 1043
PkrI GCNGC 5 cut(s) 407, 746, 749, 752, 938
PleI GAGTC 2 cut(s) 112, 710
PpsI GAGTC 2 cut(s) 112, 710
Ppu21I YACGTR 1 cut(s) 933
PpuMI RGGWCCY 2 cut(s) 377, 455
Psp1406I AACGTT 1 cut(s) 861
Psp5II RGGWCCY 2 cut(s) 377, 455
Psp6I CCWGG 1 cut(s) 632
PspFI CCCAGC 2 cut(s) 624, 654
PspGI CCWGG 1 cut(s) 632
PspN4I GGNNCC 4 cut(s) 456, 494, 754, 1165
PspPI GGNCC 4 cut(s) 377, 455, 492, 1192
PspPPI RGGWCCY 2 cut(s) 377, 455
PstNI CAGNNNCTG 1 cut(s) 161
PteI GCGCGC 1 cut(s) 820
PvuII CAGCTG 1 cut(s) 582
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 146
SalI GTCGAC 1 cut(s) 1151
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 3 cut(s) 12, 138, 807
SatI GCNGC 5 cut(s) 406, 745, 748, 751, 937
Sau3AI GATC 3 cut(s) 63, 908, 1089
Sau96I GGNCC 4 cut(s) 377, 455, 492, 1192
SchI GAGTC 2 cut(s) 113, 711
ScrFI CCNGG 1 cut(s) 634
SduI GDGCHC 2 cut(s) 100, 124
SfaNI GCATC 3 cut(s) 311, 630, 1171
SinI GGWCC 4 cut(s) 377, 455, 492, 1192
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 1 cut(s) 5
SsiI CCGC 9 cut(s) 74, 408, 471, 608, 673, 736, 745, 750, 842
SspMI CTAG 3 cut(s) 987, 1205, 1234
StyD4I CCNGG 1 cut(s) 632
TaaI ACNGT 5 cut(s) 224, 359, 1007, 1104, 1168
TaiI ACGT 3 cut(s) 864, 927, 935
TaqI TCGA 7 cut(s) 66, 114, 239, 780, 868, 1092, 1152
TasI AATT 1 cut(s) 5
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 747, 753
TfiI GAWTC 3 cut(s) 518, 561, 956
Tru1I TTAA 3 cut(s) 12, 138, 807
Tru9I TTAA 3 cut(s) 12, 138, 807
TscAI CASTG 2 cut(s) 129, 313
TseFI GTSAC 3 cut(s) 575, 920, 1046
TseI GCWGC 3 cut(s) 405, 747, 936
Tsp45I GTSAC 3 cut(s) 575, 920, 1046
TspDTI ATGAA 7 cut(s) 28, 35, 243, 257, 267, 293, 972
TspGWI ACGGA 5 cut(s) 583, 777, 784, 903, 1184
TspRI CASTG 2 cut(s) 129, 313
VpaK11BI GGWCC 4 cut(s) 377, 455, 492, 1192
XapI RAATTY 1 cut(s) 5
XmiI GTMKAC 2 cut(s) 466, 1152
XspI CTAG 3 cut(s) 987, 1205, 1234
ZraI GACGTC 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.