Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006625

Physical Location & Seq

Genomic Coordinates Forward (+)

28560629 .. 28564159

Gene Structure 3531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGGCTACTATAACAATGTCTTTGATGAATGCAACGACCAAACTGATATCGGTCGGGTTATACGCGATGGAAGGGAAGTCATTCTCCAAGCATATAATTGGGAATCTCATAAATATGATTGGTGGAGAAACTTGGATGGTAAAGTTCCTGACATCGCGAAATCCGGCTTTACTTCTGCATGGTTGCCACCACCATCTCAGTCTCTTGCACCGGAAGGTTATCTTCCACAGGACCTTTATTCACTAAACTCAGCATATGGCTCTGAGCATCTATTGAAATCCTTACTGCGCAAGATGAAACAATACAAAGTTAGAGCTATGGCTGATATAGTCATCAATCATCGTGTTGGGACAACTAGAGGACATGGTGGAATGTATAACCGTTATGATGGAATTTCATTACCGTGGGATGAACACGCCGTGACTTCTTGTACCGGAGGACTGGGTAACCGAAGCACAGGGGATAATTTCAATGGAGTTCCAAATGTTGATCACACTCAGCATTTTGTTAGGAAAGATATAATTGGATGGCTTCGTTGGTTACGCAACACCGTCGGGTTTCAAGATTTCCGTTTTGACTTTGCTAGGGGTTATTCAGCAAACTATGTGAAGGAATACATTGGCGCAGCGAAACCATTATTCTCGGTTGGAGAATGTTGGGATTCTTGCAATTACAATGGCCATGGTCTAGACTATAATCAAGATAGCCATAGACAGCGTATAATCAGTTGGATCGATGCGACGGGACAGATCTCTGCTGCATTTGACTTCACAACTAAAGGAATTCTGCAGGAAGCCGTAAAGGGTCAGTATTGGCGTTTATGTGATGCCCAAGGGAAGCCACCGGGTGTAATGGGATGGTGGCCTTCAAGAGCTGTCACATTCCTTGATAACCATGACACTGGCTCTACTCAGGCTCATTGGCCGTTCCCTTCACACCACGTTATGGAGGGCTATGCATATATACTTACTCATCCCGGCATTCCCTGTGTGTTCTACGATCACTTTTACGATTGGGGAAGCTCAATACATGATCAGATTGTCAAACTGATTGACATTAGGAGGCGACAAGATATCCACAGTAGGTCAACTGTCCGTGTTTTAAAAGCAGAATCTAACTTATATGCAGCCATTGTTGGTGAGAAAATATGTATGAAGCTTGGAGACGGCTCTTGGTGCCCTTCTGGTAGAGACTGGACTCTAGCAACAAGTGGCCATCGCTATGCCGTCTGGCACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase HIRAN Tyr-DNA_phospho

Protein Analysis

413

Amino Acids

47.17

Weight (kDa)

7.68

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alpha-amylase	PF00128	48 - 115	2.5e-07	Alpha amylase, catalytic domain
Alpha-amyl_C2	PF07821	356 - 412	1.2e-22	Alpha-amylase C-terminal beta-sheet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76130 AT1G76130
fragaria_vesca	FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840
malus_domestica	MD08G1006000.v1.1 MD15G1005200.v1.1
prunus_persica	Prupe.1G357800_v2.0.a1 Prupe.1G357800_v2.0.a1
pyrus_communis	pycom15g00370
rosa_chinensis	RchiOBHm_Chr6g0303841
rosa_laevigata	RLG00000011039
rosa_multiflora	Rmu_sc0004644.1_g000001 Rmu_sc0007179.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164360
rosa_rugosa	Rorug06G0325300 Rorug06G0325400 Rorug06G0325500
rosa_samantha	Rh6BG463400 Rh6CG451900 Rh6CG452000
rosa_wichuraiana	Rw6G038060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	1176
AccB7I	CCANNNNNTGG	1 cut(s)	946
AccII	CGCG	2 cut(s)	66, 158
AclWI	GGATC	1 cut(s)	740
AcoI	YGGCCR	3 cut(s)	679, 923, 1213
AcsI	RAATTY	2 cut(s)	393, 783
AdeI	CACNNNGTG	2 cut(s)	421, 848
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	946
AgsI	TTSAA	4 cut(s)	277, 472, 563, 870
AluBI	AGCT	4 cut(s)	317, 875, 1023, 1159
AluI	AGCT	4 cut(s)	317, 875, 1023, 1159
Alw26I	GTCTC	3 cut(s)	207, 1158, 1185
AlwI	GGATC	1 cut(s)	740
AoxI	GGCC	4 cut(s)	679, 863, 923, 1213
ApeKI	GCWGC	3 cut(s)	626, 758, 1127
ApoI	RAATTY	2 cut(s)	393, 783
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	2 cut(s)	291, 626
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	2 cut(s)	846, 978
AsuHPI	GGTGA	1 cut(s)	1151
AvaII	GGWCC	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	1181
BalI	TGGCCA	2 cut(s)	681, 1215
BanI	GGYRCC	1 cut(s)	1176
BbvI	GCAGC	3 cut(s)	638, 745, 1139
BccI	CCATC	7 cut(s)	62, 131, 202, 383, 522, 852, 1224
BceAI	ACGGC	5 cut(s)	404, 782, 910, 1183, 1211
BcgI	CGANNNNNNTGC	2 cut(s)	535, 569
BclI	TGATCA	2 cut(s)	490, 1033
BcnI	CCSGG	2 cut(s)	846, 978
BcoDI	GTCTC	3 cut(s)	207, 1158, 1185
BfaI	CTAG	4 cut(s)	357, 585, 689, 1202
BfmI	CTRYAG	1 cut(s)	788
BglII	AGATCT	1 cut(s)	750
BisI	GCNGC	3 cut(s)	627, 759, 1128
BlsI	GCNGC	3 cut(s)	628, 760, 1129
Bme1390I	CCNGG	2 cut(s)	846, 978
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	1178
BmrFI	CCNGG	2 cut(s)	846, 978
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	3 cut(s)	277, 727, 817
BmuI	ACTGGG	1 cut(s)	452
BpuMI	CCSGG	2 cut(s)	846, 978
Bsa29I	ATCGAT	1 cut(s)	735
BsaJI	CCNNGG	3 cut(s)	404, 682, 832
BsaWI	WCCGGW	2 cut(s)	211, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	946
Bse1I	ACTGG	3 cut(s)	447, 907, 1199
BseCI	ATCGAT	1 cut(s)	735
BseDI	CCNNGG	3 cut(s)	404, 682, 832
BseGI	GGATG	5 cut(s)	142, 415, 533, 863, 973
BseLI	CCNNNNNNNGG	1 cut(s)	946
BseMII	CTCAG	5 cut(s)	212, 255, 264, 512, 926
BseNI	ACTGG	3 cut(s)	447, 907, 1199
BseSI	GKGCMC	1 cut(s)	1181
BseXI	GCAGC	3 cut(s)	638, 745, 1139
Bsh1236I	CGCG	2 cut(s)	66, 158
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	4 cut(s)	681, 865, 925, 1215
BshNI	GGYRCC	1 cut(s)	1176
BshVI	ATCGAT	1 cut(s)	735
BsiEI	CGRYCG	1 cut(s)	55
BsiSI	CCGG	5 cut(s)	165, 212, 435, 845, 978
BslFI	GGGAC	2 cut(s)	364, 759
BslI	CCNNNNNNNGG	1 cut(s)	946
BsmAI	GTCTC	3 cut(s)	207, 1158, 1185
BsmBI	CGTCTC	1 cut(s)	1158
BsmFI	GGGAC	2 cut(s)	364, 759
BsmI	GAATGC	2 cut(s)	35, 981
BsnI	GGCC	4 cut(s)	681, 865, 925, 1215
Bsp1286I	GDGCHC	1 cut(s)	1181
Bsp143I	GATC	5 cut(s)	490, 732, 750, 1000, 1033
Bsp19I	CCATGG	1 cut(s)	682
Bsp68I	TCGCGA	1 cut(s)	158
BspANI	GGCC	4 cut(s)	681, 865, 925, 1215
BspCNI	CTCAG	5 cut(s)	211, 256, 263, 511, 925
BspDI	ATCGAT	1 cut(s)	735
BspFNI	CGCG	2 cut(s)	66, 158
BspLI	GGNNCC	1 cut(s)	1178
BspMAI	CTGCAG	1 cut(s)	792
BspPI	GGATC	1 cut(s)	740
BspT107I	GGYRCC	1 cut(s)	1176
BsrI	ACTGG	3 cut(s)	447, 907, 1199
BssECI	CCNNGG	3 cut(s)	404, 682, 832
BssMI	GATC	5 cut(s)	490, 732, 750, 1000, 1033
BssT1I	CCWWGG	2 cut(s)	682, 832
Bst4CI	ACNGT	5 cut(s)	383, 405, 553, 1082, 1093
BstDEI	CTNAG	5 cut(s)	198, 250, 264, 498, 912
BstDSI	CCRYGG	2 cut(s)	404, 682
BstEII	GGTNACC	1 cut(s)	446
BstF5I	GGATG	5 cut(s)	142, 415, 533, 863, 973
BstFNI	CGCG	2 cut(s)	66, 158
BstHHI	GCGC	2 cut(s)	291, 626
BstKTI	GATC	5 cut(s)	493, 735, 753, 1003, 1036
BstMAI	GTCTC	3 cut(s)	207, 1158, 1185
BstMBI	GATC	5 cut(s)	490, 732, 750, 1000, 1033
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	1176
BstPI	GGTNACC	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	844, 976
BstSFI	CTRYAG	1 cut(s)	788
BstSLI	GKGCMC	1 cut(s)	1181
BstUI	CGCG	2 cut(s)	66, 158
BstV1I	GCAGC	3 cut(s)	638, 745, 1139
BstX2I	RGATCY	1 cut(s)	750
BstXI	CCANNNNNNTGG	1 cut(s)	902
BstYI	RGATCY	1 cut(s)	750
Bsu15I	ATCGAT	1 cut(s)	735
BsuRI	GGCC	4 cut(s)	681, 865, 925, 1215
BsuTUI	ATCGAT	1 cut(s)	735
BtgI	CCRYGG	2 cut(s)	404, 682
BtgZI	GCGATG	3 cut(s)	81, 139, 1202
BtsCI	GGATG	5 cut(s)	142, 415, 533, 863, 973
BtsIMutI	CAGTG	1 cut(s)	900
BtuMI	TCGCGA	1 cut(s)	158
CfoI	GCGC	2 cut(s)	291, 626
Cfr13I	GGNCC	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	735
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	5 cut(s)	180, 365, 683, 896, 1031
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	5 cut(s)	198, 250, 264, 498, 912
DpnI	GATC	5 cut(s)	492, 734, 752, 1002, 1035
DpnII	GATC	5 cut(s)	490, 732, 750, 1000, 1033
DraI	TTTAAA	1 cut(s)	1104
DraIII	CACNNNGTG	2 cut(s)	421, 848
EaeI	YGGCCR	3 cut(s)	679, 923, 1213
Eco130I	CCWWGG	2 cut(s)	682, 832
Eco32I	GATATC	2 cut(s)	49, 1075
Eco47I	GGWCC	1 cut(s)	232
Eco91I	GGTNACC	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	783
EcoRV	GATATC	2 cut(s)	49, 1075
EcoT14I	CCWWGG	2 cut(s)	682, 832
EcoT22I	ATGCAT	1 cut(s)	961
ErhI	CCWWGG	2 cut(s)	682, 832
Esp3I	CGTCTC	1 cut(s)	1158
FaeI	CATG	5 cut(s)	183, 368, 686, 899, 1034
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	2 cut(s)	364, 759
FatI	CATG	5 cut(s)	179, 364, 682, 895, 1030
FauNDI	CATATG	1 cut(s)	256
FbaI	TGATCA	2 cut(s)	490, 1033
Fnu4HI	GCNGC	3 cut(s)	627, 759, 1128
FokI	GGATG	5 cut(s)	149, 422, 540, 870, 960
Fsp4HI	GCNGC	3 cut(s)	627, 759, 1128
FspBI	CTAG	4 cut(s)	357, 585, 689, 1202
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	2 cut(s)	290, 625
GluI	GCNGC	3 cut(s)	627, 759, 1128
HaeIII	GGCC	4 cut(s)	681, 865, 925, 1215
HapII	CCGG	5 cut(s)	165, 212, 435, 845, 978
HhaI	GCGC	2 cut(s)	291, 626
Hin1II	CATG	5 cut(s)	183, 368, 686, 899, 1034
Hin6I	GCGC	2 cut(s)	289, 624
HinP1I	GCGC	2 cut(s)	289, 624
HincII	GTYRAC	1 cut(s)	1089
HindII	GTYRAC	1 cut(s)	1089
HindIII	AAGCTT	1 cut(s)	1157
HinfI	GANTC	4 cut(s)	104, 662, 1112, 1198
HpaII	CCGG	5 cut(s)	165, 212, 435, 845, 978
HphI	GGTGA	1 cut(s)	1151
Hpy166II	GTNNAC	1 cut(s)	1089
Hpy188I	TCNGA	2 cut(s)	265, 1038
Hpy188III	TCNNGA	6 cut(s)	149, 157, 563, 689, 701, 870
Hpy8I	GTNNAC	1 cut(s)	1089
Hpy99I	CGWCG	2 cut(s)	557, 745
HpyAV	CCTTC	6 cut(s)	66, 209, 604, 876, 942, 1191
HpyCH4III	ACNGT	5 cut(s)	383, 405, 553, 1082, 1093
HpyCH4IV	ACGT	1 cut(s)	942
HpyCH4V	TGCA	8 cut(s)	33, 179, 209, 669, 761, 790, 959, 1127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1176
HpyF3I	CTNAG	5 cut(s)	198, 250, 264, 498, 912
HpySE526I	ACGT	1 cut(s)	942
Hsp92II	CATG	5 cut(s)	183, 368, 686, 899, 1034
HspAI	GCGC	2 cut(s)	289, 624
Ksp22I	TGATCA	2 cut(s)	490, 1033
Kzo9I	GATC	5 cut(s)	490, 732, 750, 1000, 1033
Lsp1109I	GCAGC	3 cut(s)	638, 745, 1139
LweI	GCATC	3 cut(s)	277, 727, 817
MaeI	CTAG	4 cut(s)	357, 585, 689, 1202
MaeII	ACGT	1 cut(s)	942
MaeIII	GTNAC	4 cut(s)	421, 446, 540, 877
MalI	GATC	5 cut(s)	492, 734, 752, 1002, 1035
MboI	GATC	5 cut(s)	490, 732, 750, 1000, 1033
MboII	GAAGA	1 cut(s)	215
MflI	RGATCY	1 cut(s)	750
MhlI	GDGCHC	1 cut(s)	1181
MlsI	TGGCCA	2 cut(s)	681, 1215
MluCI	AATT	6 cut(s)	97, 393, 466, 522, 670, 783
MluNI	TGGCCA	2 cut(s)	681, 1215
MlyI	GAGTC	1 cut(s)	1192
MmeI	TCCRAC	2 cut(s)	628, 710
MnlI	CCTC	4 cut(s)	353, 431, 943, 1056
Mox20I	TGGCCA	2 cut(s)	681, 1215
Mph1103I	ATGCAT	1 cut(s)	961
MroXI	GAANNNNTTC	1 cut(s)	81
MscI	TGGCCA	2 cut(s)	681, 1215
MseI	TTAA	1 cut(s)	1103
MslI	CAYNNNNRTG	3 cut(s)	114, 403, 1221
Msp20I	TGGCCA	2 cut(s)	681, 1215
MspI	CCGG	5 cut(s)	165, 212, 435, 845, 978
MspR9I	CCNGG	2 cut(s)	846, 978
Mva1269I	GAATGC	2 cut(s)	35, 981
MvnI	CGCG	2 cut(s)	66, 158
MwoI	GCNNNNNNNGC	1 cut(s)	1176
NciI	CCSGG	2 cut(s)	846, 978
NcoI	CCATGG	1 cut(s)	682
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	5 cut(s)	490, 732, 750, 1000, 1033
NlaIII	CATG	5 cut(s)	183, 368, 686, 899, 1034
NlaIV	GGNNCC	1 cut(s)	1178
NmuCI	GTSAC	2 cut(s)	421, 877
NruI	TCGCGA	1 cut(s)	158
NsbI	TGCGCA	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	961
PctI	GAATGC	2 cut(s)	35, 981
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	104, 662, 1112
PflMI	CCANNNNNTGG	1 cut(s)	946
PkrI	GCNGC	3 cut(s)	628, 760, 1129
PleI	GAGTC	1 cut(s)	1192
PpsI	GAGTC	1 cut(s)	1192
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	1178
PspPI	GGNCC	1 cut(s)	232
PspPPI	RGGWCCY	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	792
PsuI	RGATCY	1 cut(s)	750
RruI	TCGCGA	1 cut(s)	158
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
RseI	CAYNNNNRTG	3 cut(s)	114, 403, 1221
SaqAI	TTAA	1 cut(s)	1103
SatI	GCNGC	3 cut(s)	627, 759, 1128
Sau3AI	GATC	5 cut(s)	490, 732, 750, 1000, 1033
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	1192
ScrFI	CCNGG	2 cut(s)	846, 978
SduI	GDGCHC	1 cut(s)	1181
SetI	ASST	8 cut(s)	220, 237, 319, 877, 945, 1025, 1088, 1161
SfaNI	GCATC	3 cut(s)	277, 727, 817
SfcI	CTRYAG	1 cut(s)	788
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	3 cut(s)	114, 403, 1221
Sse9I	AATT	6 cut(s)	97, 393, 466, 522, 670, 783
SspMI	CTAG	4 cut(s)	357, 585, 689, 1202
StyD4I	CCNGG	2 cut(s)	844, 976
StyI	CCWWGG	2 cut(s)	682, 832
TaaI	ACNGT	5 cut(s)	383, 405, 553, 1082, 1093
TaiI	ACGT	1 cut(s)	945
TaqI	TCGA	1 cut(s)	735
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	6 cut(s)	97, 393, 466, 522, 670, 783
TfiI	GAWTC	3 cut(s)	104, 662, 1112
Tru1I	TTAA	1 cut(s)	1103
Tru9I	TTAA	1 cut(s)	1103
TscAI	CASTG	1 cut(s)	907
TseFI	GTSAC	2 cut(s)	421, 877
TseI	GCWGC	3 cut(s)	626, 758, 1127
Tsp45I	GTSAC	2 cut(s)	421, 877
TspDTI	ATGAA	5 cut(s)	42, 311, 387, 426, 1169
TspGWI	ACGGA	2 cut(s)	560, 1085
TspRI	CASTG	1 cut(s)	907
Van91I	CCANNNNNTGG	1 cut(s)	946
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	393, 783
XbaI	TCTAGA	1 cut(s)	688
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	4 cut(s)	357, 585, 689, 1202
Zsp2I	ATGCAT	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.