MD08G1006000.v1.1

Belongs to the glycosyl hydrolase 13 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
515050 .. 519453
4404 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1006000.v1.1.491

Sequence Viewer

Length: 1242 bp
ATGGGTTACGGAAGTAATGATTCACGAGAAAACGCGCAGCAGACTGATATTGGTGCAGCGGTGCGCAATGGAAGAGAAATCCTTTTGCAGGCCTTCAATTGGGAGTCTCATAAACATGATTGGTGGAGAAATTTAGAAACTAAAGTTCCGGATATAGGAAGATCTGGTTTTACGTCAGCATGGTTGCCGCCTGCAACTCATTCCTTTGCACCGGAAGGTTACCTTCCGCAGGACATATATTCTCTCAATTCTAAATATGGATCTGAGAACTTATTAAAATCTTTACTTCATAAAATGAAGCAACATAAAGTTAGAGCAATGGCTGACATAGTTATCAATCATCGTGTTGGGACTACTAGAGGGCATGGTGGAAAGTACAACCGCTATGATGGAATTTCGTTGTCATGGGATGAACGTGCTGTCACATCTTGTACCGGTGGACTGGGTAATCCAAGCACTGGGGACAATTTCCATGGGGTTCCGAATATTGATCATAGCCAACTTTTTGTTCGAAAAGATATTACAGGATGGATGCAGTGGCTACGTAATAATGTTGGTTTTCAGGATTTCCGATTTGATTTTGCAAGGGGTTATTCGGCAAAATATGTGAAAGAATACATTGAAGGAGCAAAACCAATTTTTTCTGTTGGGGAGTATTGGGATTCTTGCAACTACAACGGTCATGGCCTGGATTACAACCAAGATAGCCACAGACAGCGGATAGTAAATTGGATCAATGGCACAGGACAGCTATCAACTGCGTTTGACTTTACAACCAAGGGAATTCTTCAGGAAGCGGTTAAAGGACAATTGTGGCGCCTGCGTGACCCCCAAGGGAAGCCACCAGGTGTAGTTGGATGGTGGCCTTCTCGATCTGTCACCTTCCTAGATAACCATGATACAGGCTCAACCCAGGCTCATTGGCCCTTCCCTACAAATCATATTATGGAGGGTTACACATACATACTCACACACCCAGGAATACCAACAGTTTTCTACGATCATTTCTACGATTGGGGTGATTCCATTCATGATCAGATTGTGAAACTGATTGACATCAGGAAGCGTCAAGACATTCACAGCCGATCATCTATAACGATCCTAGAGGCCCAACCGAATCTCTACTCTGCTATGATAGGGGAGAAAGTGTGCATGAAAATTGGGGATGGTTCATGGTGCCCGGCCGGTAGGGAGTGGACACTGGCAACCTGTGGTCATAGATATGCTGTTTGGAACAAGTAG

Protein Analysis

414

Amino Acids

47.09

Weight (kDa)

8.17

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alpha-amylase PF00128 52 - 115 1.4e-08 Alpha amylase, catalytic domain
Alpha-amyl_C2 PF07821 356 - 411 2e-21 Alpha-amylase C-terminal beta-sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 65
AccB1I GGYRCC 2 cut(s) 816, 1176
AccB7I CCANNNNNTGG 1 cut(s) 458
AccII CGCG 1 cut(s) 35
AccIII TCCGGA 1 cut(s) 148
AciI CCGC 6 cut(s) 59, 188, 227, 382, 718, 797
AclWI GGATC 3 cut(s) 268, 740, 1093
AcoI YGGCCR 1 cut(s) 1182
AcsI RAATTY 3 cut(s) 130, 393, 783
AcuI CTGAAG 1 cut(s) 773
AcyI GRCGYC 1 cut(s) 817
AdeI CACNNNGTG 1 cut(s) 848
AfaI GTAC 2 cut(s) 377, 433
AfiI CCNNNNNNNGG 5 cut(s) 88, 99, 155, 229, 458
AgeI ACCGGT 1 cut(s) 434
AgsI TTSAA 2 cut(s) 97, 623
AjnI CCWGG 4 cut(s) 687, 844, 912, 976
AjuI GAANNNNNNNTTGG 2 cut(s) 492, 524
AluBI AGCT 1 cut(s) 751
AluI AGCT 1 cut(s) 751
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 3 cut(s) 268, 740, 1093
Aor13HI TCCGGA 1 cut(s) 148
AoxI GGCC 6 cut(s) 90, 685, 863, 923, 1107, 1182
ApeKI GCWGC 2 cut(s) 37, 56
ApoI RAATTY 3 cut(s) 130, 393, 783
AsiGI ACCGGT 1 cut(s) 434
AspLEI GCGC 3 cut(s) 37, 66, 819
AspS9I GGNCC 2 cut(s) 924, 1108
AsuC2I CCSGG 1 cut(s) 1181
AsuHPI GGTGA 2 cut(s) 871, 1031
AsuII TTCGAA 1 cut(s) 511
BaeGI GKGCMC 1 cut(s) 1181
BanI GGYRCC 2 cut(s) 816, 1176
BauI CACGAG 1 cut(s) 24
BbvI GCAGC 2 cut(s) 49, 68
BccI CCATC 4 cut(s) 383, 522, 852, 1160
BciT130I CCWGG 4 cut(s) 689, 846, 914, 978
BclI TGATCA 2 cut(s) 490, 1033
BcnI CCSGG 1 cut(s) 1181
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 3 cut(s) 357, 887, 1103
BfoI RGCGCY 1 cut(s) 820
BglII AGATCT 1 cut(s) 161
BisI GCNGC 3 cut(s) 38, 57, 188
BlsI GCNGC 3 cut(s) 39, 58, 189
Bme1390I CCNGG 5 cut(s) 689, 846, 914, 978, 1181
BmgT120I GGNCC 2 cut(s) 924, 1108
BmiI GGNNCC 3 cut(s) 480, 818, 1178
BmrFI CCNGG 5 cut(s) 689, 846, 914, 978, 1181
BmrI ACTGGG 2 cut(s) 452, 468
BmsI GCATC 1 cut(s) 522
BmuI ACTGGG 2 cut(s) 452, 468
Bpu14I TTCGAA 1 cut(s) 511
BpuMI CCSGG 1 cut(s) 1181
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 1055
BsaHI GRCGYC 1 cut(s) 817
BsaJI CCNNGG 5 cut(s) 472, 777, 832, 912, 976
BsaWI WCCGGW 3 cut(s) 148, 211, 434
BsaXI ACNNNNNCTCC 2 cut(s) 1133, 1163
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 99, 155, 229, 458
Bse118I RCCGGY 2 cut(s) 434, 1184
Bse1I ACTGG 3 cut(s) 447, 463, 1206
Bse3DI GCAATG 2 cut(s) 73, 324
Bse8I GATNNNNATC 1 cut(s) 1055
BseAI TCCGGA 1 cut(s) 148
BseBI CCWGG 4 cut(s) 689, 846, 914, 978
BseDI CCNNGG 5 cut(s) 472, 777, 832, 912, 976
BseGI GGATG 5 cut(s) 415, 533, 537, 863, 1171
BseJI GATNNNNATC 1 cut(s) 1055
BseLI CCNNNNNNNGG 5 cut(s) 88, 99, 155, 229, 458
BseMI GCAATG 2 cut(s) 73, 324
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 3 cut(s) 447, 463, 1206
BseSI GKGCMC 1 cut(s) 1181
BseX3I CGGCCG 1 cut(s) 1182
BseXI GCAGC 2 cut(s) 49, 68
BsgI GTGCAG 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 1185
BshFI GGCC 6 cut(s) 92, 687, 865, 925, 1109, 1184
BshNI GGYRCC 2 cut(s) 816, 1176
BshTI ACCGGT 1 cut(s) 434
BsiEI CGRYCG 1 cut(s) 1185
BsiSI CCGG 5 cut(s) 149, 212, 435, 1181, 1185
BslFI GGGAC 2 cut(s) 364, 476
BslI CCNNNNNNNGG 5 cut(s) 88, 99, 155, 229, 458
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 364, 476
BsnI GGCC 6 cut(s) 92, 687, 865, 925, 1109, 1184
Bsp119I TTCGAA 1 cut(s) 511
Bsp1286I GDGCHC 1 cut(s) 1181
Bsp13I TCCGGA 1 cut(s) 148
Bsp143I GATC 9 cut(s) 161, 260, 490, 732, 872, 1000, 1033, 1085, 1098
Bsp19I CCATGG 1 cut(s) 472
BspACI CCGC 6 cut(s) 59, 188, 227, 382, 718, 797
BspANI GGCC 6 cut(s) 92, 687, 865, 925, 1109, 1184
BspCNI CTCAG 1 cut(s) 256
BspEI TCCGGA 1 cut(s) 148
BspFNI CGCG 1 cut(s) 35
BspHI TCATGA 1 cut(s) 1030
BspLI GGNNCC 3 cut(s) 480, 818, 1178
BspPI GGATC 3 cut(s) 268, 740, 1093
BspT104I TTCGAA 1 cut(s) 511
BspT107I GGYRCC 2 cut(s) 816, 1176
BsrDI GCAATG 2 cut(s) 73, 324
BsrFI RCCGGY 2 cut(s) 434, 1184
BsrI ACTGG 3 cut(s) 447, 463, 1206
BssAI RCCGGY 2 cut(s) 434, 1184
BssECI CCNNGG 5 cut(s) 472, 777, 832, 912, 976
BssMI GATC 9 cut(s) 161, 260, 490, 732, 872, 1000, 1033, 1085, 1098
BssNI GRCGYC 1 cut(s) 817
BssSI CACGAG 1 cut(s) 24
BssT1I CCWWGG 3 cut(s) 472, 777, 832
Bst2BI CACGAG 1 cut(s) 24
Bst2UI CCWGG 4 cut(s) 689, 846, 914, 978
Bst4CI ACNGT 2 cut(s) 680, 991
Bst6I CTCTTC 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 817
BstBAI YACGTR 1 cut(s) 545
BstBI TTCGAA 1 cut(s) 511
BstC8I GCNNGC 3 cut(s) 90, 192, 821
BstDEI CTNAG 1 cut(s) 264
BstDSI CCRYGG 1 cut(s) 472
BstEII GGTNACC 1 cut(s) 218
BstENI CCTNNNNNAGG 2 cut(s) 86, 227
BstF5I GGATG 5 cut(s) 415, 533, 537, 863, 1171
BstFNI CGCG 1 cut(s) 35
BstH2I RGCGCY 1 cut(s) 820
BstHHI GCGC 3 cut(s) 37, 66, 819
BstKTI GATC 9 cut(s) 164, 263, 493, 735, 875, 1003, 1036, 1088, 1101
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 9 cut(s) 161, 260, 490, 732, 872, 1000, 1033, 1085, 1098
BstMCI CGRYCG 1 cut(s) 1185
BstNI CCWGG 4 cut(s) 689, 846, 914, 978
BstPI GGTNACC 1 cut(s) 218
BstSCI CCNGG 5 cut(s) 687, 844, 912, 976, 1179
BstSLI GKGCMC 1 cut(s) 1181
BstSNI TACGTA 1 cut(s) 545
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 49, 68
BstX2I RGATCY 2 cut(s) 161, 260
BstYI RGATCY 2 cut(s) 161, 260
BstZI CGGCCG 1 cut(s) 1182
BsuRI GGCC 6 cut(s) 92, 687, 865, 925, 1109, 1184
BtgI CCRYGG 1 cut(s) 472
BtsCI GGATG 5 cut(s) 415, 533, 537, 863, 1171
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 3 cut(s) 456, 542, 1199
Cac8I GCNNGC 3 cut(s) 90, 192, 821
CciI TCATGA 1 cut(s) 1030
CfoI GCGC 3 cut(s) 37, 66, 819
Cfr10I RCCGGY 2 cut(s) 434, 1184
Cfr13I GGNCC 2 cut(s) 924, 1108
CseI GACGC 1 cut(s) 1055
CsiI ACCWGGT 1 cut(s) 844
Csp6I GTAC 2 cut(s) 376, 432
CspAI ACCGGT 1 cut(s) 434
CviQI GTAC 2 cut(s) 376, 432
DdeI CTNAG 1 cut(s) 264
DinI GGCGCC 1 cut(s) 818
DpnI GATC 9 cut(s) 163, 262, 492, 734, 874, 1002, 1035, 1087, 1100
DpnII GATC 9 cut(s) 161, 260, 490, 732, 872, 1000, 1033, 1085, 1098
DraIII CACNNNGTG 1 cut(s) 848
EaeI YGGCCR 1 cut(s) 1182
EagI CGGCCG 1 cut(s) 1182
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 1182
Eco105I TACGTA 1 cut(s) 545
Eco130I CCWWGG 3 cut(s) 472, 777, 832
Eco147I AGGCCT 1 cut(s) 92
Eco52I CGGCCG 1 cut(s) 1182
Eco57I CTGAAG 1 cut(s) 773
Eco91I GGTNACC 1 cut(s) 218
EcoNI CCTNNNNNAGG 2 cut(s) 86, 227
EcoO65I GGTNACC 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 783
EcoRII CCWGG 4 cut(s) 687, 844, 912, 976
EcoT14I CCWWGG 3 cut(s) 472, 777, 832
EgeI GGCGCC 1 cut(s) 818
EheI GGCGCC 1 cut(s) 818
ErhI CCWWGG 3 cut(s) 472, 777, 832
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 2 cut(s) 364, 476
FbaI TGATCA 2 cut(s) 490, 1033
Fnu4HI GCNGC 3 cut(s) 38, 57, 188
FokI GGATG 5 cut(s) 422, 540, 544, 870, 1178
Fsp4HI GCNGC 3 cut(s) 38, 57, 188
FspBI CTAG 3 cut(s) 357, 887, 1103
FspI TGCGCA 1 cut(s) 65
GlaI GCGC 3 cut(s) 36, 65, 818
GluI GCNGC 3 cut(s) 38, 57, 188
HaeII RGCGCY 1 cut(s) 820
HaeIII GGCC 6 cut(s) 92, 687, 865, 925, 1109, 1184
HapII CCGG 5 cut(s) 149, 212, 435, 1181, 1185
HgaI GACGC 1 cut(s) 1055
HhaI GCGC 3 cut(s) 37, 66, 819
Hin1I GRCGYC 1 cut(s) 817
Hin6I GCGC 3 cut(s) 35, 64, 817
HinP1I GCGC 3 cut(s) 35, 64, 817
HinfI GANTC 5 cut(s) 20, 104, 662, 1022, 1117
HpaII CCGG 5 cut(s) 149, 212, 435, 1181, 1185
HphI GGTGA 2 cut(s) 871, 1031
Hpy166II GTNNAC 2 cut(s) 440, 1197
Hpy188I TCNGA 4 cut(s) 265, 483, 572, 1038
Hpy188III TCNNGA 8 cut(s) 24, 149, 563, 791, 870, 1031, 1060, 1070
Hpy8I GTNNAC 2 cut(s) 440, 1197
HpyAV CCTTC 7 cut(s) 103, 209, 233, 617, 876, 892, 937
HpyCH4III ACNGT 2 cut(s) 680, 991
HpyCH4IV ACGT 3 cut(s) 173, 415, 544
HpyCH4V TGCA 8 cut(s) 56, 88, 194, 209, 535, 584, 669, 1152
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 3 cut(s) 173, 415, 544
Hsp92I GRCGYC 1 cut(s) 817
HspAI GCGC 3 cut(s) 35, 64, 817
KasI GGCGCC 1 cut(s) 816
Kpn2I TCCGGA 1 cut(s) 148
Ksp22I TGATCA 2 cut(s) 490, 1033
Kzo9I GATC 9 cut(s) 161, 260, 490, 732, 872, 1000, 1033, 1085, 1098
LmnI GCTCC 1 cut(s) 626
Lsp1109I GCAGC 2 cut(s) 49, 68
LweI GCATC 1 cut(s) 522
MabI ACCWGGT 1 cut(s) 844
MaeI CTAG 3 cut(s) 357, 887, 1103
MaeII ACGT 3 cut(s) 173, 415, 544
MaeIII GTNAC 6 cut(s) 5, 218, 421, 824, 877, 953
MalI GATC 9 cut(s) 163, 262, 492, 734, 874, 1002, 1035, 1087, 1100
MboI GATC 9 cut(s) 161, 260, 490, 732, 872, 1000, 1033, 1085, 1098
MboII GAAGA 3 cut(s) 84, 171, 779
MfeI CAATTG 2 cut(s) 97, 809
MflI RGATCY 2 cut(s) 161, 260
MhlI GDGCHC 1 cut(s) 1181
Mly113I GGCGCC 1 cut(s) 817
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 835
MnlI CCTC 3 cut(s) 353, 943, 1099
MroI TCCGGA 1 cut(s) 148
MseI TTAA 2 cut(s) 275, 801
MslI CAYNNNNRTG 2 cut(s) 114, 1221
MspA1I CMGCKG 2 cut(s) 59, 718
MspI CCGG 5 cut(s) 149, 212, 435, 1181, 1185
MspR9I CCNGG 5 cut(s) 689, 846, 914, 978, 1181
MunI CAATTG 2 cut(s) 97, 809
MvaI CCWGG 4 cut(s) 689, 846, 914, 978
MvnI CGCG 1 cut(s) 35
NarI GGCGCC 1 cut(s) 817
NciI CCSGG 1 cut(s) 1181
NcoI CCATGG 1 cut(s) 472
NdeII GATC 9 cut(s) 161, 260, 490, 732, 872, 1000, 1033, 1085, 1098
NlaIV GGNNCC 3 cut(s) 480, 818, 1178
NmuCI GTSAC 3 cut(s) 421, 824, 877
NsbI TGCGCA 1 cut(s) 65
NspV TTCGAA 1 cut(s) 511
PagI TCATGA 1 cut(s) 1030
PceI AGGCCT 1 cut(s) 92
PfeI GAWTC 4 cut(s) 20, 662, 1022, 1117
PflMI CCANNNNNTGG 1 cut(s) 458
PinAI ACCGGT 1 cut(s) 434
PkrI GCNGC 3 cut(s) 39, 58, 189
PleI GAGTC 1 cut(s) 112
PluTI GGCGCC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 545
Psp6I CCWGG 4 cut(s) 687, 844, 912, 976
PspEI GGTNACC 1 cut(s) 218
PspGI CCWGG 4 cut(s) 687, 844, 912, 976
PspN4I GGNNCC 3 cut(s) 480, 818, 1178
PspPI GGNCC 2 cut(s) 924, 1108
PsuI RGATCY 2 cut(s) 161, 260
RsaI GTAC 2 cut(s) 377, 433
RsaNI GTAC 2 cut(s) 376, 432
RseI CAYNNNNRTG 2 cut(s) 114, 1221
SaqAI TTAA 2 cut(s) 275, 801
SatI GCNGC 3 cut(s) 38, 57, 188
Sau3AI GATC 9 cut(s) 161, 260, 490, 732, 872, 1000, 1033, 1085, 1098
Sau96I GGNCC 2 cut(s) 924, 1108
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 5 cut(s) 689, 846, 914, 978, 1181
SduI GDGCHC 1 cut(s) 1181
SetI ASST 9 cut(s) 176, 220, 225, 418, 547, 753, 850, 884, 1211
SexAI ACCWGGT 1 cut(s) 844
SfaNI GCATC 1 cut(s) 522
SfoI GGCGCC 1 cut(s) 818
SfuI TTCGAA 1 cut(s) 511
SmiMI CAYNNNNRTG 2 cut(s) 114, 1221
SnaBI TACGTA 1 cut(s) 545
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 6 cut(s) 59, 188, 227, 382, 718, 797
SspDI GGCGCC 1 cut(s) 816
SspI AATATT 1 cut(s) 487
SspMI CTAG 3 cut(s) 357, 887, 1103
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 5 cut(s) 687, 844, 912, 976, 1179
StyI CCWWGG 3 cut(s) 472, 777, 832
TaaI ACNGT 2 cut(s) 680, 991
TaiI ACGT 3 cut(s) 176, 418, 547
TaqI TCGA 2 cut(s) 511, 871
TatI WGTACW 1 cut(s) 375
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 4 cut(s) 20, 662, 1022, 1117
Tru1I TTAA 2 cut(s) 275, 801
Tru9I TTAA 2 cut(s) 275, 801
TscAI CASTG 3 cut(s) 463, 542, 1206
TseFI GTSAC 3 cut(s) 421, 824, 877
TseI GCWGC 2 cut(s) 37, 56
Tsp45I GTSAC 3 cut(s) 421, 824, 877
TspDTI ATGAA 6 cut(s) 278, 311, 426, 1019, 1161, 1169
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 3 cut(s) 463, 542, 1206
Van91I CCANNNNNTGG 1 cut(s) 458
XagI CCTNNNNNAGG 2 cut(s) 86, 227
XapI RAATTY 3 cut(s) 130, 393, 783
XspI CTAG 3 cut(s) 357, 887, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.