Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006625

Physical Location & Seq

Genomic Coordinates Forward (+)

62265938 .. 62271246

Gene Structure 5309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G038060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCTCTAGGTACTAATTTTCGGTCGGGCAAAGAACCTCAGGATTATCAAGAACAGAATCAGCAGACTGATATTGGTGCTTCAATACGTAATGGAAGAGAAATTCTTTTACAGGCTTTTAACTGGGAATCTCATAAACATGACTGGTGGAAAAATTTAGAAAGTAAAGTTCCAGATATTGCAAAATCTGGATTTACATCTGCATGGTTGCCACCATCAACTCATTCCTTTGCCCCGGAAGGTTACCTCCCTCAGAACATATATTCCCTCAATTCTAAATATGGATCTGAGCACCAATTAAAAGGTTTACTTCAAAAAATGAAGCAATGTAAAGTTAGACCAATGGCTGACATAGTTATCAATCATCGTGTTGGGACTACCCAAGGGCATGGTGGAATGTACAATCGTTATGATGGAATTCCTTTGTCATGGGATGAACATGCCATCACATGTTGTACTGGTGGACTGGGGAATCGAAGCACTGGGGACAATTTCAATGGGGTTCCAAACATTGATCATAGTCAACCTTTTGTTAGAAAGGATATTACTACATGGCTACAGTGGCTTCGCAATACTGTTGGTTTTCAGGATTTTCGATTTGATTTCGCAAGGGGTTATGCAGCTAAATATGTGAAAGAGTATATTGAAGGAGCAAAACCAATTTTTTCCGTTGGGGAGTATTGGGATTCTTGCAACTACAATGGTCATGGTTTGGACTACAACCAAGATAGCCACAGACAGCGGATAATAAGTTGGATTGATGGCACAGGACAACTATCAACTGCATTTGACTTCACAACCAAGGGAATTCTTCAGGAAGCTGTCGATGGACAATTATGGCGATTACGTGATCCCCAAGGGAAGCCACCAGGTGTAATGGGATGGTGGCCTTCAAGATCTATCACATTCCTAGATAACCATGATACAGGCTCAACACAGGCTCACTGGCCATTCCCTTCAAATCATATTATGGAGGGTTATGCATATATACTCACGCACCCTGGAATACCTTCCGTTTTCTATGATCACTTCTATGATTCGGGTGATTCCAATCATGATCAGATTGTGAAACTGATCCACATTAGGAAGCAAAAAGACATTCACAGCCGATCATCTGTAAGGATCCTGGAGGCCCAGCCAAACCTCTACTCTGCTATAATTGGGGAGAAAGTGTGCATGAAAATTGGGGATGGTTCATGGTGCCCAGACGTGAGGGAGTGGAAGCTGGCAACCTCTGGCCACAGATATGCGGTTTGGCACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase HIRAN Tyr-DNA_phospho

Protein Analysis

421

Amino Acids

48.1

Weight (kDa)

7.33

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alpha-amylase	PF00128	53 - 123	2.5e-08	Alpha amylase, catalytic domain
Alpha-amyl_C2	PF07821	365 - 420	1.4e-21	Alpha-amylase C-terminal beta-sheet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76130 AT1G76130
fragaria_vesca	FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840
malus_domestica	MD08G1006000.v1.1 MD15G1005200.v1.1
prunus_persica	Prupe.1G357800_v2.0.a1 Prupe.1G357800_v2.0.a1
pyrus_communis	pycom15g00370
rosa_chinensis	RchiOBHm_Chr6g0303841
rosa_laevigata	RLG00000011039
rosa_multiflora	Rmu_sc0004644.1_g000001 Rmu_sc0007179.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164360
rosa_rugosa	Rorug06G0325300 Rorug06G0325400 Rorug06G0325500
rosa_samantha	Rh6BG463400 Rh6CG451900 Rh6CG452000
rosa_wichuraiana	Rw6G038060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1200
AciI	CCGC	2 cut(s)	742, 1250
AclWI	GGATC	5 cut(s)	292, 845, 1069, 1117, 1130
AcoI	YGGCCR	2 cut(s)	947, 1237
AcsI	RAATTY	4 cut(s)	102, 154, 417, 807
AcuI	CTGAAG	1 cut(s)	797
AdeI	CACNNNGTG	1 cut(s)	872
AfaI	GTAC	3 cut(s)	13, 401, 457
AflIII	ACRYGT	1 cut(s)	449
AgsI	TTSAA	6 cut(s)	84, 314, 496, 647, 894, 960
AjiI	CACGTC	1 cut(s)	1210
AjnI	CCWGG	3 cut(s)	868, 1000, 1125
AloI	GAACNNNNNNTCC	2 cut(s)	248, 280
AluBI	AGCT	3 cut(s)	623, 821, 1225
AluI	AGCT	3 cut(s)	623, 821, 1225
Alw21I	GWGCWC	1 cut(s)	294
AlwI	GGATC	5 cut(s)	292, 845, 1069, 1117, 1130
AoxI	GGCC	4 cut(s)	887, 947, 1131, 1237
ApeKI	GCWGC	1 cut(s)	620
ApoI	RAATTY	4 cut(s)	102, 154, 417, 807
Asp700I	GAANNNNTTC	1 cut(s)	1009
AspS9I	GGNCC	1 cut(s)	1132
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	1055
AxyI	CCTNAGG	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	1205
BalI	TGGCCA	2 cut(s)	949, 1239
BamHI	GGATCC	1 cut(s)	1122
BanI	GGYRCC	1 cut(s)	1200
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	7 cut(s)	223, 407, 452, 755, 821, 876, 1184
BciT130I	CCWGG	3 cut(s)	870, 1002, 1127
BclI	TGATCA	3 cut(s)	514, 1024, 1057
BcnI	CCSGG	1 cut(s)	236
BfaI	CTAG	2 cut(s)	8, 911
BfmI	CTRYAG	1 cut(s)	557
BglII	AGATCT	1 cut(s)	896
BisI	GCNGC	1 cut(s)	621
BlsI	GCNGC	1 cut(s)	622
Bme1390I	CCNGG	4 cut(s)	236, 870, 1002, 1127
BmgBI	CACGTC	1 cut(s)	1210
BmgT120I	GGNCC	1 cut(s)	1132
BmiI	GGNNCC	3 cut(s)	504, 1124, 1202
BmrFI	CCNGG	4 cut(s)	236, 870, 1002, 1127
BmrI	ACTGGG	3 cut(s)	133, 476, 492
BmuI	ACTGGG	3 cut(s)	133, 476, 492
BpmI	CTGGAG	1 cut(s)	1148
BpuMI	CCSGG	1 cut(s)	236
BsaAI	YACGTR	2 cut(s)	89, 848
BsaBI	GATNNNNATC	2 cut(s)	196, 1050
BsaJI	CCNNGG	5 cut(s)	234, 382, 801, 856, 1000
BsaXI	ACNNNNNCTCC	2 cut(s)	1157, 1187
Bse1I	ACTGG	6 cut(s)	128, 149, 463, 471, 487, 950
Bse21I	CCTNAGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	332
Bse8I	GATNNNNATC	2 cut(s)	196, 1050
BseBI	CCWGG	3 cut(s)	870, 1002, 1127
BseDI	CCNNGG	5 cut(s)	234, 382, 801, 856, 1000
BseGI	GGATG	3 cut(s)	439, 887, 1195
BseJI	GATNNNNATC	2 cut(s)	196, 1050
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	3 cut(s)	53, 266, 279
BseNI	ACTGG	6 cut(s)	128, 149, 463, 471, 487, 950
BseSI	GKGCMC	1 cut(s)	1205
BseXI	GCAGC	1 cut(s)	632
BseYI	CCCAGC	1 cut(s)	1134
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	889, 949, 1133, 1239
BshNI	GGYRCC	1 cut(s)	1200
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	2 cut(s)	388, 500
BsmFI	GGGAC	2 cut(s)	388, 500
BsnI	GGCC	4 cut(s)	889, 949, 1133, 1239
Bsp1286I	GDGCHC	2 cut(s)	294, 1205
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	9 cut(s)	284, 514, 850, 896, 1024, 1057, 1074, 1109, 1122
BspACI	CCGC	2 cut(s)	742, 1250
BspANI	GGCC	4 cut(s)	889, 949, 1133, 1239
BspCNI	CTCAG	3 cut(s)	52, 265, 280
BspHI	TCATGA	1 cut(s)	1054
BspLI	GGNNCC	3 cut(s)	504, 1124, 1202
BspPI	GGATC	5 cut(s)	292, 845, 1069, 1117, 1130
BspT107I	GGYRCC	1 cut(s)	1200
BsrDI	GCAATG	1 cut(s)	332
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	6 cut(s)	128, 149, 463, 471, 487, 950
BssECI	CCNNGG	5 cut(s)	234, 382, 801, 856, 1000
BssMI	GATC	9 cut(s)	284, 514, 850, 896, 1024, 1057, 1074, 1109, 1122
BssT1I	CCWWGG	3 cut(s)	382, 801, 856
Bst2UI	CCWGG	3 cut(s)	870, 1002, 1127
Bst4CI	ACNGT	2 cut(s)	561, 577
Bst6I	CTCTTC	1 cut(s)	91
BstAUI	TGTACA	1 cut(s)	399
BstBAI	YACGTR	2 cut(s)	89, 848
BstC8I	GCNNGC	1 cut(s)	1227
BstDEI	CTNAG	3 cut(s)	39, 252, 288
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	3 cut(s)	439, 887, 1195
BstKTI	GATC	9 cut(s)	287, 517, 853, 899, 1027, 1060, 1077, 1112, 1125
BstMBI	GATC	9 cut(s)	284, 514, 850, 896, 1024, 1057, 1074, 1109, 1122
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNI	CCWGG	3 cut(s)	870, 1002, 1127
BstNSI	RCATGY	2 cut(s)	443, 453
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	4 cut(s)	234, 868, 1000, 1125
BstSFI	CTRYAG	1 cut(s)	557
BstSLI	GKGCMC	1 cut(s)	1205
BstSNI	TACGTA	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	632
BstX2I	RGATCY	3 cut(s)	284, 896, 1122
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	3 cut(s)	284, 896, 1122
Bsu36I	CCTNAGG	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	889, 949, 1133, 1239
BtrI	CACGTC	1 cut(s)	1210
BtsCI	GGATG	3 cut(s)	439, 887, 1195
BtsIMutI	CAGTG	3 cut(s)	480, 566, 943
Cac8I	GCNNGC	1 cut(s)	1227
CciI	TCATGA	1 cut(s)	1054
Cfr13I	GGNCC	1 cut(s)	1132
CsiI	ACCWGGT	1 cut(s)	868
Csp6I	GTAC	3 cut(s)	12, 400, 456
CviQI	GTAC	3 cut(s)	12, 400, 456
DdeI	CTNAG	3 cut(s)	39, 252, 288
DpnI	GATC	9 cut(s)	286, 516, 852, 898, 1026, 1059, 1076, 1111, 1124
DpnII	GATC	9 cut(s)	284, 514, 850, 896, 1024, 1057, 1074, 1109, 1122
DraIII	CACNNNGTG	1 cut(s)	872
EaeI	YGGCCR	2 cut(s)	947, 1237
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco105I	TACGTA	1 cut(s)	89
Eco130I	CCWWGG	3 cut(s)	382, 801, 856
Eco57I	CTGAAG	1 cut(s)	797
Eco81I	CCTNAGG	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	242
EcoRI	GAATTC	2 cut(s)	417, 807
EcoRII	CCWGG	3 cut(s)	868, 1000, 1125
EcoT14I	CCWWGG	3 cut(s)	382, 801, 856
EcoT22I	ATGCAT	1 cut(s)	985
ErhI	CCWWGG	3 cut(s)	382, 801, 856
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FaqI	GGGAC	2 cut(s)	388, 500
FbaI	TGATCA	3 cut(s)	514, 1024, 1057
Fnu4HI	GCNGC	1 cut(s)	621
FokI	GGATG	3 cut(s)	446, 894, 1202
Fsp4HI	GCNGC	1 cut(s)	621
FspBI	CTAG	2 cut(s)	8, 911
GluI	GCNGC	1 cut(s)	621
GsaI	CCCAGC	1 cut(s)	1138
GsuI	CTGGAG	1 cut(s)	1148
HaeIII	GGCC	4 cut(s)	889, 949, 1133, 1239
HapII	CCGG	1 cut(s)	236
HincII	GTYRAC	1 cut(s)	524
HindII	GTYRAC	1 cut(s)	524
HinfI	GANTC	6 cut(s)	58, 128, 472, 686, 1037, 1046
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	1055
Hpy166II	GTNNAC	3 cut(s)	308, 464, 524
Hpy188I	TCNGA	3 cut(s)	255, 289, 1062
Hpy188III	TCNNGA	8 cut(s)	41, 50, 173, 189, 587, 815, 894, 1055
Hpy8I	GTNNAC	3 cut(s)	308, 464, 524
HpyAV	CCTTC	5 cut(s)	233, 641, 900, 966, 1020
HpyCH4III	ACNGT	2 cut(s)	561, 577
HpyCH4IV	ACGT	3 cut(s)	88, 847, 1209
HpyCH4V	TGCA	7 cut(s)	182, 203, 620, 693, 785, 983, 1176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	3 cut(s)	39, 252, 288
HpySE526I	ACGT	3 cut(s)	88, 847, 1209
Ksp22I	TGATCA	3 cut(s)	514, 1024, 1057
Kzo9I	GATC	9 cut(s)	284, 514, 850, 896, 1024, 1057, 1074, 1109, 1122
LmnI	GCTCC	1 cut(s)	650
Lsp1109I	GCAGC	1 cut(s)	632
MabI	ACCWGGT	1 cut(s)	868
MaeI	CTAG	2 cut(s)	8, 911
MaeII	ACGT	3 cut(s)	88, 847, 1209
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	9 cut(s)	286, 516, 852, 898, 1026, 1059, 1076, 1111, 1124
MboI	GATC	9 cut(s)	284, 514, 850, 896, 1024, 1057, 1074, 1109, 1122
MboII	GAAGA	2 cut(s)	108, 803
MflI	RGATCY	3 cut(s)	284, 896, 1122
MhlI	GDGCHC	2 cut(s)	294, 1205
MlsI	TGGCCA	2 cut(s)	949, 1239
MluNI	TGGCCA	2 cut(s)	949, 1239
MmeI	TCCRAC	1 cut(s)	734
MnlI	CCTC	9 cut(s)	48, 257, 261, 278, 967, 1123, 1154, 1206, 1243
Mox20I	TGGCCA	2 cut(s)	949, 1239
Mph1103I	ATGCAT	1 cut(s)	985
MroXI	GAANNNNTTC	1 cut(s)	1009
MscI	TGGCCA	2 cut(s)	949, 1239
MseI	TTAA	2 cut(s)	120, 299
MslI	CAYNNNNRTG	4 cut(s)	138, 202, 1032, 1245
Msp20I	TGGCCA	2 cut(s)	949, 1239
MspA1I	CMGCKG	1 cut(s)	742
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	4 cut(s)	236, 870, 1002, 1127
MvaI	CCWGG	3 cut(s)	870, 1002, 1127
MwoI	GCNNNNNNNGC	1 cut(s)	562
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	9 cut(s)	284, 514, 850, 896, 1024, 1057, 1074, 1109, 1122
NlaIV	GGNNCC	3 cut(s)	504, 1124, 1202
NsiI	ATGCAT	1 cut(s)	985
NspI	RCATGY	2 cut(s)	443, 453
PagI	TCATGA	1 cut(s)	1054
PciI	ACATGT	1 cut(s)	449
PdmI	GAANNNNTTC	1 cut(s)	1009
PfeI	GAWTC	6 cut(s)	58, 128, 472, 686, 1037, 1046
PfoI	TCCNGGA	1 cut(s)	1125
PkrI	GCNGC	1 cut(s)	622
Ppu21I	YACGTR	2 cut(s)	89, 848
PscI	ACATGT	1 cut(s)	449
Psp6I	CCWGG	3 cut(s)	868, 1000, 1125
PspEI	GGTNACC	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	1134
PspGI	CCWGG	3 cut(s)	868, 1000, 1125
PspN4I	GGNNCC	3 cut(s)	504, 1124, 1202
PspPI	GGNCC	1 cut(s)	1132
PsuI	RGATCY	3 cut(s)	284, 896, 1122
RsaI	GTAC	3 cut(s)	13, 401, 457
RsaNI	GTAC	3 cut(s)	12, 400, 456
RseI	CAYNNNNRTG	4 cut(s)	138, 202, 1032, 1245
SaqAI	TTAA	2 cut(s)	120, 299
SatI	GCNGC	1 cut(s)	621
Sau3AI	GATC	9 cut(s)	284, 514, 850, 896, 1024, 1057, 1074, 1109, 1122
Sau96I	GGNCC	1 cut(s)	1132
ScrFI	CCNGG	4 cut(s)	236, 870, 1002, 1127
SduI	GDGCHC	2 cut(s)	294, 1205
SexAI	ACCWGGT	1 cut(s)	868
SfcI	CTRYAG	1 cut(s)	557
SmiMI	CAYNNNNRTG	4 cut(s)	138, 202, 1032, 1245
SnaBI	TACGTA	1 cut(s)	89
SsiI	CCGC	2 cut(s)	742, 1250
SspMI	CTAG	2 cut(s)	8, 911
StyD4I	CCNGG	4 cut(s)	234, 868, 1000, 1125
StyI	CCWWGG	3 cut(s)	382, 801, 856
TaaI	ACNGT	2 cut(s)	561, 577
TaiI	ACGT	3 cut(s)	91, 850, 1212
TaqI	TCGA	3 cut(s)	475, 595, 825
TaqII	GACCGA	1 cut(s)	12
TatI	WGTACW	2 cut(s)	399, 455
TfiI	GAWTC	6 cut(s)	58, 128, 472, 686, 1037, 1046
Tru1I	TTAA	2 cut(s)	120, 299
Tru9I	TTAA	2 cut(s)	120, 299
TscAI	CASTG	3 cut(s)	487, 566, 950
TseI	GCWGC	1 cut(s)	620
TspDTI	ATGAA	4 cut(s)	335, 450, 1185, 1193
TspGWI	ACGGA	2 cut(s)	658, 1003
TspRI	CASTG	3 cut(s)	487, 566, 950
XapI	RAATTY	4 cut(s)	102, 154, 417, 807
XceI	RCATGY	2 cut(s)	443, 453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	1009
XspI	CTAG	2 cut(s)	8, 911
Zsp2I	ATGCAT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.