Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006625

Physical Location & Seq

Genomic Coordinates Forward (+)

62856219 .. 62856831

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG452000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGGATGGTGGCCTTCAAGATCTGTCACATTTCTAGATAACCATGATACAGGCTCAACACAGGCTCACTGGCCATTCCCTTCAAATCATATTATGGAGGTAAGAAAATGTTGTTCTGGTTGTTGGCTTGTTGTGGTGATATTATTGTGTTCTTGCCCTGGCTGCTATTATAATCCACTGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase HIRAN Tyr-DNA_phospho

Protein Analysis

61

Amino Acids

6.94

Weight (kDa)

6.78

Isoelectric Point (pI)

54.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76130 AT1G76130
fragaria_vesca	FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840
malus_domestica	MD08G1006000.v1.1 MD15G1005200.v1.1
prunus_persica	Prupe.1G357800_v2.0.a1 Prupe.1G357800_v2.0.a1
pyrus_communis	pycom15g00370
rosa_chinensis	RchiOBHm_Chr6g0303841
rosa_laevigata	RLG00000011039
rosa_multiflora	Rmu_sc0004644.1_g000001 Rmu_sc0007179.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164360
rosa_rugosa	Rorug06G0325300 Rorug06G0325400 Rorug06G0325500
rosa_samantha	Rh6BG463400 Rh6CG451900 Rh6CG452000
rosa_wichuraiana	Rw6G038060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AcoI	YGGCCR	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	18, 84
AjnI	CCWGG	1 cut(s)	157
AoxI	GGCC	2 cut(s)	11, 71
ApeKI	GCWGC	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	2 cut(s)	35, 184
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	74, 183
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	11
BseNI	ACTGG	2 cut(s)	74, 183
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	2 cut(s)	13, 73
BsnI	GGCC	2 cut(s)	13, 73
Bsp143I	GATC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	13, 73
BsrI	ACTGG	2 cut(s)	74, 183
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	13, 73
BtsCI	GGATG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	67, 176
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	6 cut(s)	13, 54, 65, 73, 127, 162
CviKI_1	RGCY	6 cut(s)	13, 54, 65, 73, 127, 162
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
EaeI	YGGCCR	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	47
FaiI	YATR	4 cut(s)	45, 90, 95, 171
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	2 cut(s)	35, 184
GluI	GCNGC	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	13, 73
Hin1II	CATG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	18, 35
HpyAV	CCTTC	2 cut(s)	24, 90
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	20
LpnPI	CCDG	7 cut(s)	36, 47, 55, 102, 144, 164, 171
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	2 cut(s)	35, 184
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MflI	RGATCY	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	73
MluNI	TGGCCA	1 cut(s)	73
MnlI	CCTC	1 cut(s)	91
Mox20I	TGGCCA	1 cut(s)	73
MscI	TGGCCA	1 cut(s)	73
Msp20I	TGGCCA	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	162
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	164
PsiI	TTATAA	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	20
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	1 cut(s)	102
SspMI	CTAG	2 cut(s)	35, 184
StyD4I	CCNGG	1 cut(s)	157
TscAI	CASTG	2 cut(s)	74, 183
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	25
TspRI	CASTG	2 cut(s)	74, 183
XbaI	TCTAGA	1 cut(s)	34
XspI	CTAG	2 cut(s)	35, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.