Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006625

Physical Location & Seq

Genomic Coordinates Forward (+)

47688035 .. 47689318

Gene Structure 1284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0325300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGTCAGGAACAACATCGACCCCAGCAGGGTGACCAGCTGGAACCGATCAAGTACGGCGACGTGTTCAACGTCTCCGGTGAGTTGGCGTCGAAACCTGTCGCCCCACGCGACGCCGCCACCATGCAGGCTGCCGAAAACCTAGTCCTCGGAGAAACTCAGAGAGGCGGCCCGGCAGCAGTCATGCAGTCGGCAGCTACATACAACGAGCGAGCTGGTCTAGTCGGCCATCGTGACGCCACCGATGCCACTAGTGAGGATGGTGTTACCGTGTCGGAATCAATCAATCTCGATGGTAACAAAGTTATCACCGAAAGAGTTGCTGGGCAGGTTGTGGGACAATATGTGGAGCCACCGCCTGGGGCATCTCCGGCAGCAGTAGTTCTTGAACACGATGCAATCACAATTGGCGAGGCATTCGAGGCAACTGCTCTCTCTGCCGGTGACAAGTCGGTCGACCAAAGTGACGCAGCTGCCATTCAAGCTGCAGAGATGAGAGCCACCGGGTGTAGTGAGATATCTCCGGGAGGTTTGGCGGCTATAGCTCAGTATGCAGTGTCTGCTAACACAAGGGAGGCCGAGAAGACTAAGCTGGCTGATGTTTTAGAGGATGCCACTCAGAAGATGGGTTGTGACAAACCGGTGACTCGTGAGGATGCGAAGGCCATTATAGGAGCAGAGATAAGGAACAACCCTAATATGAGCACTACTCCTGGTGGAATTGCTGAATCAATGGCTGCTGCAGCTAGGCTTAACCAGAACTTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase HIRAN Tyr-DNA_phospho

Protein Analysis

256

Amino Acids

26.52

Weight (kDa)

4.54

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	17 - 72	3.8e-20	Seed maturation protein
SMP	PF04927	134 - 191	1.2e-20	Seed maturation protein
SMP	PF04927	196 - 254	1.2e-21	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76130 AT1G76130
fragaria_vesca	FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840
malus_domestica	MD08G1006000.v1.1 MD15G1005200.v1.1
prunus_persica	Prupe.1G357800_v2.0.a1 Prupe.1G357800_v2.0.a1
pyrus_communis	pycom15g00370
rosa_chinensis	RchiOBHm_Chr6g0303841
rosa_laevigata	RLG00000011039
rosa_multiflora	Rmu_sc0004644.1_g000001 Rmu_sc0007179.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164360
rosa_rugosa	Rorug06G0325300 Rorug06G0325400 Rorug06G0325500
rosa_samantha	Rh6BG463400 Rh6CG451900 Rh6CG452000
rosa_wichuraiana	Rw6G038060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	456
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	117, 168, 356, 536
AcoI	YGGCCR	1 cut(s)	226
AcyI	GRCGYC	3 cut(s)	89, 114, 237
AdeI	CACNNNGTG	1 cut(s)	507
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	29, 359
AflIII	ACRYGT	1 cut(s)	63
AgeI	ACCGGT	1 cut(s)	640
AgsI	TTSAA	3 cut(s)	70, 389, 482
AhlI	ACTAGT	1 cut(s)	251
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	358, 712
AluBI	AGCT	8 cut(s)	40, 197, 215, 473, 485, 545, 592, 746
AluI	AGCT	8 cut(s)	40, 197, 215, 473, 485, 545, 592, 746
Alw21I	GWGCWC	1 cut(s)	707
Alw26I	GTCTC	1 cut(s)	79
AlwNI	CAGNNNCTG	1 cut(s)	560
AoxI	GGCC	4 cut(s)	169, 226, 576, 663
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AsiGI	ACCGGT	1 cut(s)	640
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	3 cut(s)	173, 505, 525
AsuHPI	GGTGA	5 cut(s)	44, 92, 301, 455, 655
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	707
BccI	CCATC	4 cut(s)	237, 254, 287, 619
BceAI	ACGGC	1 cut(s)	73
BcgI	CGANNNNNNTGC	4 cut(s)	302, 336, 410, 444
BciT130I	CCWGG	2 cut(s)	360, 714
BcnI	CCSGG	3 cut(s)	173, 505, 525
BcoDI	GTCTC	1 cut(s)	79
BcuI	ACTAGT	1 cut(s)	251
BfaI	CTAG	4 cut(s)	143, 221, 252, 747
BfmI	CTRYAG	3 cut(s)	486, 540, 741
BfuAI	ACCTGC	1 cut(s)	319
Bme1390I	CCNGG	5 cut(s)	173, 360, 505, 525, 714
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	45, 351
BmrFI	CCNGG	5 cut(s)	173, 360, 505, 525, 714
BmsI	GCATC	5 cut(s)	235, 374, 385, 601, 646
BpiI	GAAGAC	1 cut(s)	590
BplI	GAGNNNNNCTC	2 cut(s)	694, 726
BpuMI	CCSGG	3 cut(s)	173, 505, 525
BsaHI	GRCGYC	3 cut(s)	89, 114, 237
BsaJI	CCNNGG	2 cut(s)	148, 359
BsaWI	WCCGGW	2 cut(s)	77, 640
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 359
Bse118I	RCCGGY	2 cut(s)	440, 640
BseBI	CCWGG	2 cut(s)	360, 714
BseDI	CCNNGG	2 cut(s)	148, 359
BseGI	GGATG	3 cut(s)	265, 616, 661
BseLI	CCNNNNNNNGG	2 cut(s)	29, 359
BseMII	CTCAG	3 cut(s)	173, 560, 632
BseYI	CCCAGC	2 cut(s)	24, 323
Bsh1236I	CGCG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	4 cut(s)	171, 228, 578, 665
BshTI	ACCGGT	1 cut(s)	640
BsiEI	CGRYCG	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	707
BsiSI	CCGG	7 cut(s)	78, 173, 371, 441, 504, 524, 641
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	29, 359
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	4 cut(s)	171, 228, 578, 665
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	4 cut(s)	117, 168, 356, 536
BspANI	GGCC	4 cut(s)	171, 228, 578, 665
BspCNI	CTCAG	3 cut(s)	172, 559, 631
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	45, 351
BspMAI	CTGCAG	2 cut(s)	490, 745
BspMI	ACCTGC	1 cut(s)	319
BsrFI	RCCGGY	2 cut(s)	440, 640
BssAI	RCCGGY	2 cut(s)	440, 640
BssECI	CCNNGG	2 cut(s)	148, 359
BssMI	GATC	1 cut(s)	48
BssNI	GRCGYC	3 cut(s)	89, 114, 237
BssSI	CACGAG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	360, 714
Bst4CI	ACNGT	1 cut(s)	271
BstACI	GRCGYC	3 cut(s)	89, 114, 237
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	129, 213, 594
BstDEI	CTNAG	4 cut(s)	159, 546, 588, 618
BstEII	GGTNACC	1 cut(s)	32
BstF5I	GGATG	3 cut(s)	265, 616, 661
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	48
BstMCI	CGRYCG	1 cut(s)	456
BstMWI	GCNNNNNNNGC	9 cut(s)	245, 371, 422, 437, 482, 542, 551, 560, 743
BstNI	CCWGG	2 cut(s)	360, 714
BstPI	GGTNACC	1 cut(s)	32
BstSCI	CCNGG	5 cut(s)	171, 358, 503, 523, 712
BstSFI	CTRYAG	3 cut(s)	486, 540, 741
BstUI	CGCG	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	590
BsuRI	GGCC	4 cut(s)	171, 228, 578, 665
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	265, 616, 661
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	561
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	3 cut(s)	129, 213, 594
CaiI	CAGNNNCTG	1 cut(s)	560
Cfr10I	RCCGGY	2 cut(s)	440, 640
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	4 cut(s)	78, 122, 245, 476
Csp6I	GTAC	1 cut(s)	55
CspAI	ACCGGT	1 cut(s)	640
CviAII	CATG	2 cut(s)	124, 184
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	4 cut(s)	159, 546, 588, 618
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
DraIII	CACNNNGTG	1 cut(s)	507
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	519
Eco91I	GGTNACC	1 cut(s)	32
EcoO65I	GGTNACC	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	358, 712
EcoRV	GATATC	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	2 cut(s)	127, 187
FaiI	YATR	9 cut(s)	125, 185, 202, 345, 542, 552, 671, 701, 766
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	2 cut(s)	123, 183
FblI	GTMKAC	1 cut(s)	456
FokI	GGATG	3 cut(s)	272, 623, 668
FspBI	CTAG	4 cut(s)	143, 221, 252, 747
GsaI	CCCAGC	2 cut(s)	28, 327
HaeIII	GGCC	4 cut(s)	171, 228, 578, 665
HapII	CCGG	7 cut(s)	78, 173, 371, 441, 504, 524, 641
HgaI	GACGC	4 cut(s)	78, 122, 245, 476
Hin1I	GRCGYC	3 cut(s)	89, 114, 237
Hin1II	CATG	2 cut(s)	127, 187
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	4 cut(s)	4, 278, 646, 728
HpaII	CCGG	7 cut(s)	78, 173, 371, 441, 504, 524, 641
HphI	GGTGA	5 cut(s)	44, 92, 301, 455, 655
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	4 cut(s)	152, 162, 277, 621
Hpy188III	TCNNGA	5 cut(s)	8, 233, 290, 386, 650
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	3 cut(s)	65, 94, 116
HpyAV	CCTTC	1 cut(s)	655
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	63, 72
HpyCH4V	TGCA	6 cut(s)	127, 187, 398, 488, 554, 743
HpyF10VI	GCNNNNNNNGC	9 cut(s)	245, 371, 422, 437, 482, 542, 551, 560, 743
HpyF3I	CTNAG	4 cut(s)	159, 546, 588, 618
HpySE526I	ACGT	2 cut(s)	63, 72
Hsp92I	GRCGYC	3 cut(s)	89, 114, 237
Hsp92II	CATG	2 cut(s)	127, 187
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	349, 674
LweI	GCATC	5 cut(s)	235, 374, 385, 601, 646
MaeI	CTAG	4 cut(s)	143, 221, 252, 747
MaeII	ACGT	2 cut(s)	63, 72
MaeIII	GTNAC	8 cut(s)	32, 233, 265, 296, 443, 464, 632, 643
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	595, 634
MfeI	CAATTG	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	707
MluCI	AATT	2 cut(s)	405, 720
MlyI	GAGTC	2 cut(s)	13, 640
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	9 cut(s)	158, 158, 250, 406, 415, 521, 568, 601, 646
MseI	TTAA	1 cut(s)	753
MspA1I	CMGCKG	2 cut(s)	40, 473
MspI	CCGG	7 cut(s)	78, 173, 371, 441, 504, 524, 641
MspR9I	CCNGG	5 cut(s)	173, 360, 505, 525, 714
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	2 cut(s)	360, 714
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	9 cut(s)	245, 371, 422, 437, 482, 542, 551, 560, 743
NciI	CCSGG	3 cut(s)	173, 505, 525
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	2 cut(s)	127, 187
NlaIV	GGNNCC	2 cut(s)	45, 351
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	6 cut(s)	32, 233, 443, 464, 632, 643
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 108
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	278, 728
PflMI	CCANNNNNTGG	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	523
PinAI	ACCGGT	1 cut(s)	640
PleI	GAGTC	2 cut(s)	12, 640
PpsI	GAGTC	2 cut(s)	12, 640
Psp6I	CCWGG	2 cut(s)	358, 712
PspEI	GGTNACC	1 cut(s)	32
PspFI	CCCAGC	2 cut(s)	24, 323
PspGI	CCWGG	2 cut(s)	358, 712
PspN4I	GGNNCC	2 cut(s)	45, 351
PspPI	GGNCC	1 cut(s)	170
PstI	CTGCAG	2 cut(s)	490, 745
PstNI	CAGNNNCTG	1 cut(s)	560
PvuII	CAGCTG	2 cut(s)	40, 473
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SalI	GTCGAC	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	753
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	2 cut(s)	13, 640
ScrFI	CCNGG	5 cut(s)	173, 360, 505, 525, 714
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	5 cut(s)	235, 374, 385, 601, 646
SfcI	CTRYAG	3 cut(s)	486, 540, 741
SpeI	ACTAGT	1 cut(s)	251
Sse9I	AATT	2 cut(s)	405, 720
SsiI	CCGC	4 cut(s)	117, 168, 356, 536
SspMI	CTAG	4 cut(s)	143, 221, 252, 747
StyD4I	CCNGG	5 cut(s)	171, 358, 503, 523, 712
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	66, 75
TaqI	TCGA	5 cut(s)	19, 92, 291, 420, 456
TaqII	GACCGA	1 cut(s)	442
TasI	AATT	2 cut(s)	405, 720
TauI	GCSGC	3 cut(s)	119, 171, 539
TfiI	GAWTC	2 cut(s)	278, 728
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	1 cut(s)	561
TseFI	GTSAC	6 cut(s)	32, 233, 443, 464, 632, 643
Tsp45I	GTSAC	6 cut(s)	32, 233, 443, 464, 632, 643
TspRI	CASTG	1 cut(s)	561
Van91I	CCANNNNNTGG	1 cut(s)	359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	4 cut(s)	143, 221, 252, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.