Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006625

Physical Location & Seq

Genomic Coordinates Reverse (-)

6294505 .. 6298417

Gene Structure 3913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011039

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGTAACCTTAGCACTGATTATCAAGAACAGAATCAGCAGACTGACATTGGTGCTTCAATACGTAATGGAAGAGAAATTCTTTTACAGGCCTTTAACTGGGAATCTCATAAACATGACTGGTGGAAAAATTTAGAAAGTAAAGTTCCAGATATTGCAAAATCTGGATTTACATCAGCATGGTTGCCACCATCAACTCATTCCTTTGCCCCGGAAGGTTACCTCCCTCAGAACATATATTCTCTCAATTCTAAATATGGATCTGAGCACCAATTAAAAGGTTTACTTCAAAAAATGAACCAATGTAAAGTTAGACCAATGGCTGACGTAGTTATCAATCATCGTGTTGGGACTACCCAAGGGCATGGTGGAATGTACAATCGTTATGATGGAATTCCTTTGTCATGGGATGAACATGCCGTCACATCTTGTACTGGTGGACTGGGGAATCGAAGCACTGGGGACAATTTCAATGGGGTTCCAAATATTGATCATAGTCAACCTTTTGTTAGAAAGGATATTAGTACATGGCTACAGTGGCTTCGCAATACTGTTGGTTTTCAGGATTTTCGATTTGATTTCGCAAGGGGTTATGCAGCTAAATATGTGAAAGAGTATATTGAAGGAGCAAAACCAATTTTTTCCGTTGGGGAGTATTGGGATTCTTGCAACTACAATGGTCATGGTTTGGACTACAACCAAGATAGCCACAGACAACGGATAATAAGTTGGATTGATGGCACAGGACAGCTATCAACTGCATTTGACTTCACAACCAAGGGAATTCTTCAGAATGGCTTCCAAGAACTGCTGAAGTTATTTCTGCGTCAGATGCACATATTGCATGCGAGTAGAGAATTTGGGATTGCCCACTGGCCATTCCCTTCAAATCATATTATGGAGGCCCAGCCAAACCTCTACTCTGCTTTAATTGGGGAGAAAGTGTGCATGAAAATTGGGGATGGTTCATGGTGCCCAGACATGAGGGAGTGGAAGCTGGCAACCTCTGGCCGCAGATTTGCGGTTTGGCACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase HIRAN Tyr-DNA_phospho

Protein Analysis

346

Amino Acids

39.46

Weight (kDa)

7.74

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alpha-amylase	PF00128	45 - 115	4.5e-08	Alpha amylase, catalytic domain
Alpha-amyl_C2	PF07821	298 - 344	1.2e-15	Alpha-amylase C-terminal beta-sheet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76130 AT1G76130
fragaria_vesca	FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840
malus_domestica	MD08G1006000.v1.1 MD15G1005200.v1.1
prunus_persica	Prupe.1G357800_v2.0.a1 Prupe.1G357800_v2.0.a1
pyrus_communis	pycom15g00370
rosa_chinensis	RchiOBHm_Chr6g0303841
rosa_laevigata	RLG00000011039
rosa_multiflora	Rmu_sc0004644.1_g000001 Rmu_sc0007179.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164360
rosa_rugosa	Rorug06G0325300 Rorug06G0325400 Rorug06G0325500
rosa_samantha	Rh6BG463400 Rh6CG451900 Rh6CG452000
rosa_wichuraiana	Rw6G038060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	972
AciI	CCGC	2 cut(s)	1012, 1022
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	2 cut(s)	875, 1009
AcsI	RAATTY	5 cut(s)	78, 130, 393, 783, 857
AcuI	CTGAAG	2 cut(s)	773, 833
AfaI	GTAC	3 cut(s)	377, 433, 526
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	5 cut(s)	60, 290, 472, 623, 888
AluBI	AGCT	3 cut(s)	599, 751, 997
AluI	AGCT	3 cut(s)	599, 751, 997
Alw21I	GWGCWC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	268
AoxI	GGCC	4 cut(s)	90, 875, 903, 1009
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	5 cut(s)	78, 130, 393, 783, 857
Asp700I	GAANNNNTTC	1 cut(s)	797
AspS9I	GGNCC	1 cut(s)	904
AsuC2I	CCSGG	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	977
BalI	TGGCCA	1 cut(s)	877
BanI	GGYRCC	1 cut(s)	972
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	608
BccI	CCATC	4 cut(s)	199, 383, 731, 956
BceAI	ACGGC	1 cut(s)	404
BclI	TGATCA	1 cut(s)	490
BcnI	CCSGG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	533
BisI	GCNGC	2 cut(s)	597, 1012
BlsI	GCNGC	2 cut(s)	598, 1013
Bme1390I	CCNGG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	904
BmiI	GGNNCC	2 cut(s)	480, 974
BmrFI	CCNGG	1 cut(s)	212
BmrI	ACTGGG	3 cut(s)	109, 452, 468
BmsI	GCATC	1 cut(s)	822
BmuI	ACTGGG	3 cut(s)	109, 452, 468
Bpu10I	CCTNAGC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	172
BsaJI	CCNNGG	3 cut(s)	210, 358, 777
BsaXI	ACNNNNNCTCC	2 cut(s)	929, 959
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	6 cut(s)	104, 125, 439, 447, 463, 878
Bse8I	GATNNNNATC	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	210, 358, 777
BseGI	GGATG	2 cut(s)	415, 967
BseJI	GATNNNNATC	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	242, 255
BseNI	ACTGG	6 cut(s)	104, 125, 439, 447, 463, 878
BseSI	GKGCMC	1 cut(s)	977
BseXI	GCAGC	1 cut(s)	608
BseYI	CCCAGC	1 cut(s)	906
BshFI	GGCC	4 cut(s)	92, 877, 905, 1011
BshNI	GGYRCC	1 cut(s)	972
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	2 cut(s)	364, 476
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	364, 476
BsnI	GGCC	4 cut(s)	92, 877, 905, 1011
Bsp1286I	GDGCHC	2 cut(s)	270, 977
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	260, 490
BspACI	CCGC	2 cut(s)	1012, 1022
BspANI	GGCC	4 cut(s)	92, 877, 905, 1011
BspCNI	CTCAG	2 cut(s)	241, 256
BspLI	GGNNCC	2 cut(s)	480, 974
BspPI	GGATC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	972
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	6 cut(s)	104, 125, 439, 447, 463, 878
BssECI	CCNNGG	3 cut(s)	210, 358, 777
BssMI	GATC	2 cut(s)	260, 490
BssT1I	CCWWGG	2 cut(s)	358, 777
Bst4CI	ACNGT	2 cut(s)	537, 553
Bst6I	CTCTTC	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	841
BstAUI	TGTACA	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	846, 999
BstDEI	CTNAG	3 cut(s)	11, 228, 264
BstEII	GGTNACC	2 cut(s)	5, 218
BstF5I	GGATG	2 cut(s)	415, 967
BstKTI	GATC	2 cut(s)	263, 493
BstMBI	GATC	2 cut(s)	260, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	538, 832, 841
BstNSI	RCATGY	2 cut(s)	419, 848
BstPI	GGTNACC	2 cut(s)	5, 218
BstSCI	CCNGG	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	533
BstSLI	GKGCMC	1 cut(s)	977
BstSNI	TACGTA	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	260
BstXI	CCANNNNNNTGG	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	4 cut(s)	92, 877, 905, 1011
BtsCI	GGATG	2 cut(s)	415, 967
BtsIMutI	CAGTG	4 cut(s)	15, 456, 542, 871
Cac8I	GCNNGC	2 cut(s)	846, 999
Cfr13I	GGNCC	1 cut(s)	904
CseI	GACGC	1 cut(s)	815
Csp6I	GTAC	3 cut(s)	376, 432, 525
CviQI	GTAC	3 cut(s)	376, 432, 525
DdeI	CTNAG	3 cut(s)	11, 228, 264
DpnI	GATC	2 cut(s)	262, 492
DpnII	GATC	2 cut(s)	260, 490
EaeI	YGGCCR	2 cut(s)	875, 1009
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco105I	TACGTA	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	358, 777
Eco147I	AGGCCT	1 cut(s)	92
Eco57I	CTGAAG	2 cut(s)	773, 833
Eco91I	GGTNACC	2 cut(s)	5, 218
EcoO65I	GGTNACC	2 cut(s)	5, 218
EcoRI	GAATTC	2 cut(s)	393, 783
EcoT14I	CCWWGG	2 cut(s)	358, 777
ErhI	CCWWGG	2 cut(s)	358, 777
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	2 cut(s)	364, 476
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	2 cut(s)	597, 1012
FokI	GGATG	2 cut(s)	422, 974
Fsp4HI	GCNGC	2 cut(s)	597, 1012
GluI	GCNGC	2 cut(s)	597, 1012
GsaI	CCCAGC	1 cut(s)	910
HaeIII	GGCC	4 cut(s)	92, 877, 905, 1011
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	815
HincII	GTYRAC	1 cut(s)	500
HindII	GTYRAC	1 cut(s)	500
HinfI	GANTC	4 cut(s)	34, 104, 448, 662
HpaII	CCGG	1 cut(s)	212
Hpy166II	GTNNAC	3 cut(s)	284, 440, 500
Hpy188I	TCNGA	4 cut(s)	231, 265, 792, 831
Hpy188III	TCNNGA	4 cut(s)	26, 149, 165, 563
Hpy8I	GTNNAC	3 cut(s)	284, 440, 500
HpyAV	CCTTC	3 cut(s)	209, 617, 894
HpyCH4III	ACNGT	2 cut(s)	537, 553
HpyCH4IV	ACGT	2 cut(s)	64, 327
HpyCH4V	TGCA	7 cut(s)	158, 596, 669, 761, 835, 844, 948
HpyF10VI	GCNNNNNNNGC	3 cut(s)	538, 832, 841
HpyF3I	CTNAG	3 cut(s)	11, 228, 264
HpySE526I	ACGT	2 cut(s)	64, 327
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	2 cut(s)	260, 490
LmnI	GCTCC	1 cut(s)	626
Lsp1109I	GCAGC	1 cut(s)	608
LweI	GCATC	1 cut(s)	822
MaeII	ACGT	2 cut(s)	64, 327
MaeIII	GTNAC	3 cut(s)	5, 218, 421
MalI	GATC	2 cut(s)	262, 492
MboI	GATC	2 cut(s)	260, 490
MboII	GAAGA	2 cut(s)	84, 779
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	270, 977
MlsI	TGGCCA	1 cut(s)	877
MluNI	TGGCCA	1 cut(s)	877
MmeI	TCCRAC	1 cut(s)	710
MnlI	CCTC	6 cut(s)	233, 237, 895, 926, 978, 1015
Mox20I	TGGCCA	1 cut(s)	877
MroXI	GAANNNNTTC	1 cut(s)	797
MscI	TGGCCA	1 cut(s)	877
MseI	TTAA	3 cut(s)	96, 275, 929
MslI	CAYNNNNRTG	2 cut(s)	114, 178
Msp20I	TGGCCA	1 cut(s)	877
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	538, 832, 841
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	260, 490
NlaIV	GGNNCC	2 cut(s)	480, 974
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	2 cut(s)	419, 848
PaeI	GCATGC	1 cut(s)	848
PceI	AGGCCT	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	797
PfeI	GAWTC	4 cut(s)	34, 104, 448, 662
PkrI	GCNGC	2 cut(s)	598, 1013
Ppu21I	YACGTR	1 cut(s)	65
PspEI	GGTNACC	2 cut(s)	5, 218
PspFI	CCCAGC	1 cut(s)	906
PspN4I	GGNNCC	2 cut(s)	480, 974
PspPI	GGNCC	1 cut(s)	904
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	3 cut(s)	377, 433, 526
RsaNI	GTAC	3 cut(s)	376, 432, 525
RseI	CAYNNNNRTG	2 cut(s)	114, 178
SaqAI	TTAA	3 cut(s)	96, 275, 929
SatI	GCNGC	2 cut(s)	597, 1012
Sau3AI	GATC	2 cut(s)	260, 490
Sau96I	GGNCC	1 cut(s)	904
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	2 cut(s)	270, 977
SfaNI	GCATC	1 cut(s)	822
SfcI	CTRYAG	1 cut(s)	533
SmiMI	CAYNNNNRTG	2 cut(s)	114, 178
SnaBI	TACGTA	1 cut(s)	65
SphI	GCATGC	1 cut(s)	848
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	2 cut(s)	1012, 1022
SspI	AATATT	1 cut(s)	487
StuI	AGGCCT	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	2 cut(s)	358, 777
TaaI	ACNGT	2 cut(s)	537, 553
TaiI	ACGT	2 cut(s)	67, 330
TaqI	TCGA	2 cut(s)	451, 571
TatI	WGTACW	3 cut(s)	375, 431, 524
TauI	GCSGC	1 cut(s)	1014
TfiI	GAWTC	4 cut(s)	34, 104, 448, 662
Tru1I	TTAA	3 cut(s)	96, 275, 929
Tru9I	TTAA	3 cut(s)	96, 275, 929
TscAI	CASTG	4 cut(s)	22, 463, 542, 878
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	4 cut(s)	311, 426, 957, 965
TspGWI	ACGGA	2 cut(s)	634, 733
TspRI	CASTG	4 cut(s)	22, 463, 542, 878
XapI	RAATTY	5 cut(s)	78, 130, 393, 783, 857
XceI	RCATGY	2 cut(s)	419, 848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.