Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006625

Physical Location & Seq

Genomic Coordinates Reverse (-)

241575 .. 244705

Gene Structure 3131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00370.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGATTACCTACGCAGCAATGATTCACGAGAAAATGCGCAGCAGACTGATATTGGTGCAGCAGTGCGCAATGGAAGAGAAATCCTTTTTCAGGCCTTCAATTGGGAGTCTCATAAACATGATTGGTGGAGAAATTTAGAAACAAAAGTTCCGGATATAGGAAGTTCTGGTTTTACGTCAGCATGGTTGCCACCAGCAACTCAATCCTTTGCACCAGAAGGTTACCTTCCGCAGGACATATATTCCCTCAATTCTAAATATGGATCTGAGAACTTATTAAAATCTTTACTTCAAAAAATGAAGCAACATAAAGTTAGAGCAATGGCTGACATAGTTATCAATCATCGTGTTGGGACTACCCGAGGGCATGGTGGAATGTACAACCGCTATGATGGAATTTCATTGTCATGGGATGAACATGCTGTCACATCTTGTACCGGTGGACTGGGTAATCAAAGCACTGGTGACAATTTCCATGGGGTTCCGAATATTGATCATAGCCAACTTTTTGTTCGAAAAGATATTACAGGATGGCTGCAGTGGCTACGTAATAATGTTGGTTTTCAGGATTTCCGATTTGATTTTGCAAGGGGTTATTCAGCAAAATATGTGAAAGAATACATTGAAGGAGCAAAACCCATTTTTTCTGTTGGGGAGTATTGGGATTCTTGCAACTACAACGATCATGGCCTGGATTACAACCAAGATAGCCACAGACAGCGGATAGTAAATTGGATTAATGGCACTGGACAGCTATCAACTGCGTTTGACTTCACAACCAAGGGAATTCTTCAGGAAGCTGTTAAAGGGCAATTGTGGCGCCTGCGTGACCCCCAAGGGAAGCCACCAGGTTTAATTGGATGGTGGCCTTCAAGAGCTGTCACATTCCTAGATAACCATGATACAGGCTCAACGCAGGCTCATTGGCCCTTCCCTTCAAATCATATTATGGAGGGTTACGCATACATACTCATGCACCCAGGAATACCAACAGTTTTCTACGATCGATTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase HIRAN Tyr-DNA_phospho

Protein Analysis

339

Amino Acids

38.67

Weight (kDa)

6.7

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76130 AT1G76130
fragaria_vesca	FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840
malus_domestica	MD08G1006000.v1.1 MD15G1005200.v1.1
prunus_persica	Prupe.1G357800_v2.0.a1 Prupe.1G357800_v2.0.a1
pyrus_communis	pycom15g00370
rosa_chinensis	RchiOBHm_Chr6g0303841
rosa_laevigata	RLG00000011039
rosa_multiflora	Rmu_sc0004644.1_g000001 Rmu_sc0007179.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164360
rosa_rugosa	Rorug06G0325300 Rorug06G0325400 Rorug06G0325500
rosa_samantha	Rh6BG463400 Rh6CG451900 Rh6CG452000
rosa_wichuraiana	Rw6G038060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	39, 68
AccB1I	GGYRCC	1 cut(s)	819
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	3 cut(s)	230, 385, 721
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	3 cut(s)	133, 396, 786
AcuI	CTGAAG	1 cut(s)	776
AcyI	GRCGYC	1 cut(s)	820
AfaI	GTAC	2 cut(s)	380, 436
AfiI	CCNNNNNNNGG	4 cut(s)	91, 102, 158, 232
AgeI	ACCGGT	1 cut(s)	437
AgsI	TTSAA	5 cut(s)	100, 293, 626, 873, 939
AjnI	CCWGG	3 cut(s)	690, 847, 979
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AluBI	AGCT	3 cut(s)	754, 800, 878
AluI	AGCT	3 cut(s)	754, 800, 878
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	360
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	4 cut(s)	93, 688, 866, 926
ApeKI	GCWGC	4 cut(s)	15, 40, 59, 535
ApoI	RAATTY	3 cut(s)	133, 396, 786
AseI	ATTAAT	1 cut(s)	738
AsiGI	ACCGGT	1 cut(s)	437
AspLEI	GCGC	3 cut(s)	40, 69, 822
AspS9I	GGNCC	1 cut(s)	927
AsuHPI	GGTGA	1 cut(s)	476
AsuII	TTCGAA	1 cut(s)	514
AvaI	CYCGRG	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	819
BauI	CACGAG	1 cut(s)	27
BbvI	GCAGC	4 cut(s)	27, 52, 71, 522
BccI	CCATC	3 cut(s)	386, 525, 855
BciT130I	CCWGG	3 cut(s)	692, 849, 981
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	890
BfmI	CTRYAG	1 cut(s)	536
BfoI	RGCGCY	1 cut(s)	823
BisI	GCNGC	4 cut(s)	16, 41, 60, 536
BlsI	GCNGC	4 cut(s)	17, 42, 61, 537
Bme1390I	CCNGG	3 cut(s)	692, 849, 981
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	927
BmiI	GGNNCC	2 cut(s)	483, 821
BmrFI	CCNGG	3 cut(s)	692, 849, 981
BmrI	ACTGGG	1 cut(s)	455
BmuI	ACTGGG	1 cut(s)	455
Bpu14I	TTCGAA	1 cut(s)	514
Bsa29I	ATCGAT	1 cut(s)	1006
BsaAI	YACGTR	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	820
BsaJI	CCNNGG	5 cut(s)	361, 475, 780, 835, 979
BsaWI	WCCGGW	2 cut(s)	151, 437
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 102, 158, 232
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	3 cut(s)	450, 466, 751
Bse3DI	GCAATG	3 cut(s)	25, 76, 327
BseAI	TCCGGA	1 cut(s)	151
BseBI	CCWGG	3 cut(s)	692, 849, 981
BseCI	ATCGAT	1 cut(s)	1006
BseDI	CCNNGG	5 cut(s)	361, 475, 780, 835, 979
BseGI	GGATG	3 cut(s)	418, 536, 866
BseLI	CCNNNNNNNGG	4 cut(s)	91, 102, 158, 232
BseMI	GCAATG	3 cut(s)	25, 76, 327
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	3 cut(s)	450, 466, 751
BseXI	GCAGC	4 cut(s)	27, 52, 71, 522
BsgI	GTGCAG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	1006
BshFI	GGCC	4 cut(s)	95, 690, 868, 928
BshNI	GGYRCC	1 cut(s)	819
BshTI	ACCGGT	1 cut(s)	437
BshVI	ATCGAT	1 cut(s)	1006
BsiEI	CGRYCG	1 cut(s)	1006
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	152, 438
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	4 cut(s)	91, 102, 158, 232
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	4 cut(s)	95, 690, 868, 928
BsoBI	CYCGRG	1 cut(s)	360
Bsp119I	TTCGAA	1 cut(s)	514
Bsp13I	TCCGGA	1 cut(s)	151
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	4 cut(s)	263, 493, 682, 1003
Bsp19I	CCATGG	1 cut(s)	475
BspACI	CCGC	3 cut(s)	230, 385, 721
BspANI	GGCC	4 cut(s)	95, 690, 868, 928
BspCNI	CTCAG	1 cut(s)	259
BspDI	ATCGAT	1 cut(s)	1006
BspEI	TCCGGA	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	483, 821
BspMAI	CTGCAG	1 cut(s)	540
BspPI	GGATC	1 cut(s)	271
BspT104I	TTCGAA	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	819
BsrDI	GCAATG	3 cut(s)	25, 76, 327
BsrFI	RCCGGY	1 cut(s)	437
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	3 cut(s)	450, 466, 751
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	5 cut(s)	361, 475, 780, 835, 979
BssMI	GATC	4 cut(s)	263, 493, 682, 1003
BssNI	GRCGYC	1 cut(s)	820
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	3 cut(s)	475, 780, 835
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	3 cut(s)	692, 849, 981
Bst4CI	ACNGT	1 cut(s)	994
Bst6I	CTCTTC	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	820
BstAUI	TGTACA	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	548
BstBI	TTCGAA	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	824, 918
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	475
BstEII	GGTNACC	1 cut(s)	221
BstENI	CCTNNNNNAGG	2 cut(s)	89, 230
BstF5I	GGATG	3 cut(s)	418, 536, 866
BstH2I	RGCGCY	1 cut(s)	823
BstHHI	GCGC	3 cut(s)	40, 69, 822
BstKTI	GATC	4 cut(s)	266, 496, 685, 1006
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	4 cut(s)	263, 493, 682, 1003
BstMCI	CGRYCG	1 cut(s)	1006
BstMWI	GCNNNNNNNGC	2 cut(s)	541, 817
BstNI	CCWGG	3 cut(s)	692, 849, 981
BstNSI	RCATGY	1 cut(s)	422
BstPI	GGTNACC	1 cut(s)	221
BstSCI	CCNGG	3 cut(s)	690, 847, 979
BstSFI	CTRYAG	1 cut(s)	536
BstSNI	TACGTA	1 cut(s)	548
BstV1I	GCAGC	4 cut(s)	27, 52, 71, 522
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
Bsu15I	ATCGAT	1 cut(s)	1006
BsuRI	GGCC	4 cut(s)	95, 690, 868, 928
BsuTUI	ATCGAT	1 cut(s)	1006
BtgI	CCRYGG	1 cut(s)	475
BtsCI	GGATG	3 cut(s)	418, 536, 866
BtsI	GCAGTG	2 cut(s)	69, 545
BtsIMutI	CAGTG	4 cut(s)	69, 459, 545, 744
Cac8I	GCNNGC	2 cut(s)	824, 918
CfoI	GCGC	3 cut(s)	40, 69, 822
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	927
ClaI	ATCGAT	1 cut(s)	1006
CsiI	ACCWGGT	1 cut(s)	847
Csp6I	GTAC	2 cut(s)	379, 435
CspAI	ACCGGT	1 cut(s)	437
CviAII	CATG	9 cut(s)	119, 183, 368, 408, 419, 476, 686, 899, 973
CviQI	GTAC	2 cut(s)	379, 435
DdeI	CTNAG	1 cut(s)	267
DinI	GGCGCC	1 cut(s)	821
DpnI	GATC	4 cut(s)	265, 495, 684, 1005
DpnII	GATC	4 cut(s)	263, 493, 682, 1003
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco105I	TACGTA	1 cut(s)	548
Eco130I	CCWWGG	3 cut(s)	475, 780, 835
Eco147I	AGGCCT	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	776
Eco88I	CYCGRG	1 cut(s)	360
Eco91I	GGTNACC	1 cut(s)	221
EcoNI	CCTNNNNNAGG	2 cut(s)	89, 230
EcoO65I	GGTNACC	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	786
EcoRII	CCWGG	3 cut(s)	690, 847, 979
EcoT14I	CCWWGG	3 cut(s)	475, 780, 835
EgeI	GGCGCC	1 cut(s)	821
EheI	GGCGCC	1 cut(s)	821
ErhI	CCWWGG	3 cut(s)	475, 780, 835
FaeI	CATG	9 cut(s)	122, 186, 371, 411, 422, 479, 689, 902, 976
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	9 cut(s)	118, 182, 367, 407, 418, 475, 685, 898, 972
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	4 cut(s)	16, 41, 60, 536
FokI	GGATG	3 cut(s)	425, 543, 873
Fsp4HI	GCNGC	4 cut(s)	16, 41, 60, 536
FspBI	CTAG	1 cut(s)	890
FspI	TGCGCA	2 cut(s)	39, 68
GlaI	GCGC	3 cut(s)	39, 68, 821
GluI	GCNGC	4 cut(s)	16, 41, 60, 536
HaeII	RGCGCY	1 cut(s)	823
HaeIII	GGCC	4 cut(s)	95, 690, 868, 928
HapII	CCGG	2 cut(s)	152, 438
HhaI	GCGC	3 cut(s)	40, 69, 822
Hin1I	GRCGYC	1 cut(s)	820
Hin1II	CATG	9 cut(s)	122, 186, 371, 411, 422, 479, 689, 902, 976
Hin6I	GCGC	3 cut(s)	38, 67, 820
HinP1I	GCGC	3 cut(s)	38, 67, 820
HinfI	GANTC	3 cut(s)	23, 107, 665
HpaII	CCGG	2 cut(s)	152, 438
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	3 cut(s)	268, 486, 575
Hpy188III	TCNNGA	5 cut(s)	27, 152, 566, 794, 873
Hpy8I	GTNNAC	1 cut(s)	443
HpyAV	CCTTC	7 cut(s)	106, 212, 236, 620, 879, 940, 945
HpyCH4III	ACNGT	1 cut(s)	994
HpyCH4IV	ACGT	2 cut(s)	176, 547
HpyCH4V	TGCA	6 cut(s)	59, 212, 538, 587, 672, 976
HpyF10VI	GCNNNNNNNGC	2 cut(s)	541, 817
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	2 cut(s)	176, 547
Hsp92I	GRCGYC	1 cut(s)	820
Hsp92II	CATG	9 cut(s)	122, 186, 371, 411, 422, 479, 689, 902, 976
HspAI	GCGC	3 cut(s)	38, 67, 820
KasI	GGCGCC	1 cut(s)	819
Kpn2I	TCCGGA	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	4 cut(s)	263, 493, 682, 1003
LmnI	GCTCC	1 cut(s)	629
Lsp1109I	GCAGC	4 cut(s)	27, 52, 71, 522
MabI	ACCWGGT	1 cut(s)	847
MaeI	CTAG	1 cut(s)	890
MaeII	ACGT	2 cut(s)	176, 547
MaeIII	GTNAC	6 cut(s)	221, 424, 464, 827, 880, 956
MalI	GATC	4 cut(s)	265, 495, 684, 1005
MboI	GATC	4 cut(s)	263, 493, 682, 1003
MboII	GAAGA	2 cut(s)	87, 782
MfeI	CAATTG	2 cut(s)	100, 812
MflI	RGATCY	1 cut(s)	263
MluCI	AATT	9 cut(s)	100, 133, 250, 396, 469, 730, 786, 812, 855
Mly113I	GGCGCC	1 cut(s)	820
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	3 cut(s)	257, 356, 946
MroI	TCCGGA	1 cut(s)	151
MseI	TTAA	4 cut(s)	278, 738, 804, 854
MslI	CAYNNNNRTG	3 cut(s)	117, 406, 971
MspA1I	CMGCKG	1 cut(s)	721
MspI	CCGG	2 cut(s)	152, 438
MspR9I	CCNGG	3 cut(s)	692, 849, 981
MunI	CAATTG	2 cut(s)	100, 812
MvaI	CCWGG	3 cut(s)	692, 849, 981
MwoI	GCNNNNNNNGC	2 cut(s)	541, 817
NarI	GGCGCC	1 cut(s)	820
NcoI	CCATGG	1 cut(s)	475
NdeII	GATC	4 cut(s)	263, 493, 682, 1003
NlaIII	CATG	9 cut(s)	122, 186, 371, 411, 422, 479, 689, 902, 976
NlaIV	GGNNCC	2 cut(s)	483, 821
NmuCI	GTSAC	4 cut(s)	424, 464, 827, 880
NsbI	TGCGCA	2 cut(s)	39, 68
NspI	RCATGY	1 cut(s)	422
NspV	TTCGAA	1 cut(s)	514
PceI	AGGCCT	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	23, 665
PinAI	ACCGGT	1 cut(s)	437
PkrI	GCNGC	4 cut(s)	17, 42, 61, 537
Ple19I	CGATCG	1 cut(s)	1006
PleI	GAGTC	1 cut(s)	115
PluTI	GGCGCC	1 cut(s)	823
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	548
PshBI	ATTAAT	1 cut(s)	738
Psp6I	CCWGG	3 cut(s)	690, 847, 979
PspEI	GGTNACC	1 cut(s)	221
PspGI	CCWGG	3 cut(s)	690, 847, 979
PspN4I	GGNNCC	2 cut(s)	483, 821
PspPI	GGNCC	1 cut(s)	927
PstI	CTGCAG	1 cut(s)	540
PsuI	RGATCY	1 cut(s)	263
PvuI	CGATCG	1 cut(s)	1006
RsaI	GTAC	2 cut(s)	380, 436
RsaNI	GTAC	2 cut(s)	379, 435
RseI	CAYNNNNRTG	3 cut(s)	117, 406, 971
SaqAI	TTAA	4 cut(s)	278, 738, 804, 854
SatI	GCNGC	4 cut(s)	16, 41, 60, 536
Sau3AI	GATC	4 cut(s)	263, 493, 682, 1003
Sau96I	GGNCC	1 cut(s)	927
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	3 cut(s)	692, 849, 981
SetI	ASST	9 cut(s)	12, 179, 223, 228, 550, 756, 802, 853, 880
SexAI	ACCWGGT	1 cut(s)	847
SfcI	CTRYAG	1 cut(s)	536
SfoI	GGCGCC	1 cut(s)	821
SfuI	TTCGAA	1 cut(s)	514
SmiMI	CAYNNNNRTG	3 cut(s)	117, 406, 971
SnaBI	TACGTA	1 cut(s)	548
Sse9I	AATT	9 cut(s)	100, 133, 250, 396, 469, 730, 786, 812, 855
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	3 cut(s)	230, 385, 721
SspDI	GGCGCC	1 cut(s)	819
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	1 cut(s)	890
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	690, 847, 979
StyI	CCWWGG	3 cut(s)	475, 780, 835
TaaI	ACNGT	1 cut(s)	994
TaiI	ACGT	2 cut(s)	179, 550
TaqI	TCGA	2 cut(s)	514, 1006
TasI	AATT	9 cut(s)	100, 133, 250, 396, 469, 730, 786, 812, 855
TatI	WGTACW	1 cut(s)	378
TfiI	GAWTC	2 cut(s)	23, 665
Tru1I	TTAA	4 cut(s)	278, 738, 804, 854
Tru9I	TTAA	4 cut(s)	278, 738, 804, 854
TscAI	CASTG	4 cut(s)	69, 466, 545, 751
TseFI	GTSAC	4 cut(s)	424, 464, 827, 880
TseI	GCWGC	4 cut(s)	15, 40, 59, 535
Tsp45I	GTSAC	4 cut(s)	424, 464, 827, 880
TspDTI	ATGAA	3 cut(s)	314, 390, 429
TspRI	CASTG	4 cut(s)	69, 466, 545, 751
VspI	ATTAAT	1 cut(s)	738
XagI	CCTNNNNNAGG	2 cut(s)	89, 230
XapI	RAATTY	3 cut(s)	133, 396, 786
XceI	RCATGY	1 cut(s)	422
XspI	CTAG	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.