Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006625

Physical Location & Seq

Genomic Coordinates Forward (+)

62853382 .. 62855772

Gene Structure 2391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG451900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCAATGGGTAACCTTAGCACTGATTATCAAGAACAGAATCAGCAGGCTGATATTGGTGCTTCAATACGTAATGGAAGAGAAATTCTTTTACAGGCCTTTAACTGGGAATCTCATAAACATGACTGGTGGAAAAATTTAGAAAGTAAAGTTCCAGATATTGCAAAATCTGGATTTACATCAGCATGGTTGCCACCATCAACTCATTCCTTTGCCCCGGAAGGTTACCTCCCTCAGAACATATATTCCCTCAATTCTAAATATGGATCTGAGCACCAATTAAAAGGTTTACTTCAAAAAATGAAGCAATGTAAAGTTAGACCAATGGCTGACATAGTTATCAATCATCGTGTTGGGACTACCCAAGGGCATGGTGGAATGTACAATCGTTATGATGGAATTCCCTTGTCATGGGATGAACATGCCGTCACATCTTGTACTGGTGGACTGGGGAATCGAAGCACTGGGGACAATTTCAATGGGGTTCCAAATATTGATCATAGTCAACCTTTTGTTAGAAAGGATATTACTACATGGCTACAGTGGCTTTGCAATACTGTTGGTTTTCAGGATTTTCGATTTGATTTCGCAAGGGGTTATGCAGCTAAATATGTGAAAGAGTATATTGAAGGAGCAAAACCAATTTTTTCCGTTGGGGAGTATTGGGATTCTTGCAACTACAATGGTCATGGTTTGGACTACAACCAAGATAGCCACAGACAGCGGATAATAAGTTGGATTGATGGCACAGGACAACTATCAACTGCATTTGACTTCACAACCAAGGGAATTCTTCAGGTTTCATCCATTTCTATTGGACTGAGATGTTCAACTCCCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase HIRAN Tyr-DNA_phospho

Protein Analysis

280

Amino Acids

31.57

Weight (kDa)

6.79

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alpha-amylase	PF00128	47 - 117	1.3e-08	Alpha amylase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76130 AT1G76130
fragaria_vesca	FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840 FvH4_2g37840
malus_domestica	MD08G1006000.v1.1 MD15G1005200.v1.1
prunus_persica	Prupe.1G357800_v2.0.a1 Prupe.1G357800_v2.0.a1
pyrus_communis	pycom15g00370
rosa_chinensis	RchiOBHm_Chr6g0303841
rosa_laevigata	RLG00000011039
rosa_multiflora	Rmu_sc0004644.1_g000001 Rmu_sc0007179.1_g000002
rosa_roxburghii	Rroxscaffold_7G00164360
rosa_rugosa	Rorug06G0325300 Rorug06G0325400 Rorug06G0325500
rosa_samantha	Rh6BG463400 Rh6CG451900 Rh6CG452000
rosa_wichuraiana	Rw6G038060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	724
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	4 cut(s)	84, 136, 399, 789
AcuI	CTGAAG	1 cut(s)	779
AfaI	GTAC	2 cut(s)	383, 439
AfiI	CCNNNNNNNGG	2 cut(s)	105, 411
AgsI	TTSAA	5 cut(s)	66, 296, 478, 629, 831
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	1 cut(s)	605
AluI	AGCT	1 cut(s)	605
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	4 cut(s)	84, 136, 399, 789
AsuC2I	CCSGG	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	3 cut(s)	205, 389, 737
BceAI	ACGGC	1 cut(s)	410
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	539
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	218
BmrI	ACTGGG	3 cut(s)	115, 458, 474
BmuI	ACTGGG	3 cut(s)	115, 458, 474
Bpu10I	CCTNAGC	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	178
BsaJI	CCNNGG	3 cut(s)	216, 364, 783
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 411
Bse1I	ACTGG	5 cut(s)	110, 131, 445, 453, 469
Bse3DI	GCAATG	2 cut(s)	12, 314
Bse8I	GATNNNNATC	1 cut(s)	178
BseDI	CCNNGG	3 cut(s)	216, 364, 783
BseGI	GGATG	2 cut(s)	421, 803
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	105, 411
BseMI	GCAATG	2 cut(s)	12, 314
BseMII	CTCAG	3 cut(s)	248, 261, 812
BseNI	ACTGG	5 cut(s)	110, 131, 445, 453, 469
BseXI	GCAGC	1 cut(s)	614
BshFI	GGCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	370, 482
BslI	CCNNNNNNNGG	2 cut(s)	105, 411
BsmFI	GGGAC	2 cut(s)	370, 482
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	266, 496
BspACI	CCGC	1 cut(s)	724
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	3 cut(s)	247, 262, 813
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	1 cut(s)	274
BsrDI	GCAATG	2 cut(s)	12, 314
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	5 cut(s)	110, 131, 445, 453, 469
BssECI	CCNNGG	3 cut(s)	216, 364, 783
BssMI	GATC	2 cut(s)	266, 496
BssT1I	CCWWGG	2 cut(s)	364, 783
Bst4CI	ACNGT	2 cut(s)	543, 559
Bst6I	CTCTTC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	381
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	4 cut(s)	17, 234, 270, 821
BstEII	GGTNACC	2 cut(s)	11, 224
BstF5I	GGATG	2 cut(s)	421, 803
BstKTI	GATC	2 cut(s)	269, 499
BstMBI	GATC	2 cut(s)	266, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNSI	RCATGY	1 cut(s)	425
BstPI	GGTNACC	2 cut(s)	11, 224
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	539
BstSNI	TACGTA	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	614
BstX2I	RGATCY	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	421, 803
BtsIMutI	CAGTG	3 cut(s)	21, 462, 548
Cac8I	GCNNGC	1 cut(s)	48
Csp6I	GTAC	2 cut(s)	382, 438
CviAII	CATG	7 cut(s)	122, 186, 371, 411, 422, 534, 689
CviJI	RGCY	7 cut(s)	50, 98, 329, 538, 547, 605, 714
CviKI_1	RGCY	7 cut(s)	50, 98, 329, 538, 547, 605, 714
CviQI	GTAC	2 cut(s)	382, 438
DdeI	CTNAG	4 cut(s)	17, 234, 270, 821
DpnI	GATC	2 cut(s)	268, 498
DpnII	GATC	2 cut(s)	266, 496
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco105I	TACGTA	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	364, 783
Eco147I	AGGCCT	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	779
Eco91I	GGTNACC	2 cut(s)	11, 224
EcoO65I	GGTNACC	2 cut(s)	11, 224
EcoRI	GAATTC	2 cut(s)	399, 789
EcoT14I	CCWWGG	2 cut(s)	364, 783
ErhI	CCWWGG	2 cut(s)	364, 783
FaeI	CATG	7 cut(s)	125, 189, 374, 414, 425, 537, 692
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	2 cut(s)	370, 482
FatI	CATG	7 cut(s)	121, 185, 370, 410, 421, 533, 688
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	2 cut(s)	428, 790
Fsp4HI	GCNGC	1 cut(s)	603
GluI	GCNGC	1 cut(s)	603
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	218
Hin1II	CATG	7 cut(s)	125, 189, 374, 414, 425, 537, 692
HincII	GTYRAC	1 cut(s)	506
HindII	GTYRAC	1 cut(s)	506
HinfI	GANTC	4 cut(s)	40, 110, 454, 668
HpaII	CCGG	1 cut(s)	218
Hpy166II	GTNNAC	3 cut(s)	290, 446, 506
Hpy188I	TCNGA	2 cut(s)	237, 271
Hpy188III	TCNNGA	4 cut(s)	32, 155, 171, 569
Hpy8I	GTNNAC	3 cut(s)	290, 446, 506
HpyAV	CCTTC	2 cut(s)	215, 623
HpyCH4III	ACNGT	2 cut(s)	543, 559
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	5 cut(s)	164, 552, 602, 675, 767
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	4 cut(s)	17, 234, 270, 821
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	7 cut(s)	125, 189, 374, 414, 425, 537, 692
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	266, 496
LmnI	GCTCC	1 cut(s)	632
Lsp1109I	GCAGC	1 cut(s)	614
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	3 cut(s)	11, 224, 427
MalI	GATC	2 cut(s)	268, 498
MboI	GATC	2 cut(s)	266, 496
MboII	GAAGA	2 cut(s)	90, 785
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	8 cut(s)	84, 136, 253, 278, 399, 472, 642, 789
MmeI	TCCRAC	1 cut(s)	716
MnlI	CCTC	3 cut(s)	239, 243, 260
MseI	TTAA	2 cut(s)	102, 281
MslI	CAYNNNNRTG	2 cut(s)	120, 184
MspA1I	CMGCKG	1 cut(s)	724
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	2 cut(s)	266, 496
NlaIII	CATG	7 cut(s)	125, 189, 374, 414, 425, 537, 692
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	425
PceI	AGGCCT	1 cut(s)	98
PfeI	GAWTC	4 cut(s)	40, 110, 454, 668
PkrI	GCNGC	1 cut(s)	604
Ppu21I	YACGTR	1 cut(s)	71
PspEI	GGTNACC	2 cut(s)	11, 224
PspN4I	GGNNCC	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	2 cut(s)	383, 439
RsaNI	GTAC	2 cut(s)	382, 438
RseI	CAYNNNNRTG	2 cut(s)	120, 184
SaqAI	TTAA	2 cut(s)	102, 281
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	2 cut(s)	266, 496
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	9 cut(s)	18, 73, 226, 231, 289, 511, 607, 801, 842
SfcI	CTRYAG	1 cut(s)	539
SmiMI	CAYNNNNRTG	2 cut(s)	120, 184
SnaBI	TACGTA	1 cut(s)	71
Sse9I	AATT	8 cut(s)	84, 136, 253, 278, 399, 472, 642, 789
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	1 cut(s)	724
SspI	AATATT	1 cut(s)	493
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	2 cut(s)	364, 783
TaaI	ACNGT	2 cut(s)	543, 559
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	457, 577
TasI	AATT	8 cut(s)	84, 136, 253, 278, 399, 472, 642, 789
TatI	WGTACW	2 cut(s)	381, 437
TfiI	GAWTC	4 cut(s)	40, 110, 454, 668
Tru1I	TTAA	2 cut(s)	102, 281
Tru9I	TTAA	2 cut(s)	102, 281
TscAI	CASTG	3 cut(s)	28, 469, 548
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	3 cut(s)	317, 432, 792
TspGWI	ACGGA	1 cut(s)	640
TspRI	CASTG	3 cut(s)	28, 469, 548
XapI	RAATTY	4 cut(s)	84, 136, 399, 789
XceI	RCATGY	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.