Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007456

Physical Location & Seq

Genomic Coordinates Reverse (-)

28682084 .. 28683785

Gene Structure 1702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAACGCTGAGAATAATCAGACTACTACTACTCACTCGAAAGTGATCTCACATGTATTCTGCACTGGTACTGCTAAGCTAGGCTCTGTTGGGCCACCCATTGGTCTTGTTGATATTGGCGTCAGCGAAGTTGCTTACATCTTCCGAGTCTCTCTTCCTGGCATTGAGAAAAATCAAGATAAGATCAAATGTGAAATTCAGAGGGAGGGGAGAGTTTGCATCCAAGGAGTTATACCTGAGATTGCGATTCCAAGTGACACGGGATGCTTATACAGAATGCAAGTGCAACAGCTCTGTCCGCCTGGTCCATTCTCAATCACGTTTAATCTTCCGGGACAAGTGGATCCTCGCTTGTTTTCTCCTAATTTTAGATCTGATGGGATCTTTGAAGTCGTCGTAGTCAAGCTCGGAGTGCGCATCCCAACTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

143

Amino Acids

15.53

Weight (kDa)

7.63

Isoelectric Point (pI)

24.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76440 AT1G76440 AT1G76440
fragaria_vesca	FvH4_5g25970 FvH4_5g25970
malus_domestica	MD09G1270300.v1.1 MD17G1268400.v1.1
prunus_persica	Prupe.5G006000_v2.0.a1
pyrus_communis	pycom09g18150
rosa_chinensis	RchiOBHm_Chr4g0409731
rosa_laevigata	RLG00000008528
rosa_multiflora	Rmu_sc0008746.1_g000001 Rmu_sc0013436.1_g000001 Rmu_sc0015305.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354290
rosa_rugosa	Rorug04G0096500 Rorug07G0160800
rosa_samantha	Rh4AG157700 Rh4BG157500 Rh4CG168300 Rh4DG152100 Rh7BG292000 Rh7DG301300
rosa_wichuraiana	Rw4G012900 Rw4G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	101
AciI	CCGC	1 cut(s)	299
AclWI	GGATC	3 cut(s)	338, 351, 389
AcsI	RAATTY	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	101
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	157, 301
AluBI	AGCT	3 cut(s)	79, 292, 406
AluI	AGCT	3 cut(s)	79, 292, 406
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	3 cut(s)	338, 351, 389
AoxI	GGCC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	92, 305
AsuC2I	CCSGG	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	343
BccI	CCATC	1 cut(s)	371
BciT130I	CCWGG	2 cut(s)	159, 303
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	80
BglII	AGATCT	1 cut(s)	371
BlpI	GCTNAGC	1 cut(s)	75
Bme1390I	CCNGG	3 cut(s)	159, 303, 333
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	92, 305
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	3 cut(s)	159, 303, 333
BmsI	GCATC	3 cut(s)	228, 254, 426
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	70
BseBI	CCWGG	2 cut(s)	159, 303
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	3 cut(s)	219, 269, 417
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	94
Bsp143I	GATC	5 cut(s)	45, 183, 343, 371, 381
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	345
BspPI	GGATC	3 cut(s)	338, 351, 389
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	5 cut(s)	45, 183, 343, 371, 381
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	2 cut(s)	159, 303
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	9, 75, 237
BstF5I	GGATG	3 cut(s)	219, 269, 417
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	5 cut(s)	48, 186, 346, 374, 384
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	5 cut(s)	45, 183, 343, 371, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 412
BstNI	CCWGG	2 cut(s)	159, 303
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	3 cut(s)	157, 301, 331
BstX2I	RGATCY	3 cut(s)	343, 371, 381
BstYI	RGATCY	3 cut(s)	343, 371, 381
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	219, 269, 417
BtsIMutI	CAGTG	1 cut(s)	63
CfoI	GCGC	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	92, 305
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	5 cut(s)	79, 84, 94, 292, 406
CviKI_1	RGCY	5 cut(s)	79, 84, 94, 292, 406
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	3 cut(s)	9, 75, 237
DpnI	GATC	5 cut(s)	47, 185, 345, 373, 383
DpnII	GATC	5 cut(s)	45, 183, 343, 371, 381
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EciI	GGCGGA	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	157, 301
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	1 cut(s)	56
FaiI	YATR	4 cut(s)	54, 233, 271, 430
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	1 cut(s)	52
FokI	GGATG	3 cut(s)	206, 276, 404
FspAI	RTGCGCAY	1 cut(s)	416
FspBI	CTAG	1 cut(s)	80
FspI	TGCGCA	1 cut(s)	416
GlaI	GCGC	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	332
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	417
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HinfI	GANTC	2 cut(s)	147, 247
HpaII	CCGG	1 cut(s)	332
Hpy188I	TCNGA	5 cut(s)	21, 146, 201, 376, 410
Hpy188III	TCNNGA	1 cut(s)	176
Hpy99I	CGWCG	1 cut(s)	398
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	4 cut(s)	63, 219, 280, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 412
HpyF3I	CTNAG	3 cut(s)	9, 75, 237
HpySE526I	ACGT	1 cut(s)	320
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	1 cut(s)	415
Kzo9I	GATC	5 cut(s)	45, 183, 343, 371, 381
LpnPI	CCDG	7 cut(s)	51, 144, 171, 249, 288, 315, 345
LweI	GCATC	3 cut(s)	228, 254, 426
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	5 cut(s)	47, 185, 345, 373, 383
MboI	GATC	5 cut(s)	45, 183, 343, 371, 381
MboII	GAAGA	3 cut(s)	133, 146, 320
MflI	RGATCY	3 cut(s)	343, 371, 381
MluCI	AATT	2 cut(s)	195, 364
MlyI	GAGTC	1 cut(s)	156
MnlI	CCTC	3 cut(s)	195, 199, 357
MseI	TTAA	1 cut(s)	324
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	3 cut(s)	159, 303, 333
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	2 cut(s)	159, 303
MwoI	GCNNNNNNNGC	2 cut(s)	298, 412
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	5 cut(s)	45, 183, 343, 371, 381
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	345
NmuCI	GTSAC	1 cut(s)	254
NsbI	TGCGCA	1 cut(s)	416
NspI	RCATGY	1 cut(s)	56
PciI	ACATGT	1 cut(s)	52
PctI	GAATGC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	247
PflMI	CCANNNNNTGG	1 cut(s)	101
PfoI	TCCNGGA	1 cut(s)	331
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PscI	ACATGT	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	157, 301
PspGI	CCWGG	2 cut(s)	157, 301
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	2 cut(s)	92, 305
PsuI	RGATCY	3 cut(s)	343, 371, 381
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	5 cut(s)	45, 183, 343, 371, 381
Sau96I	GGNCC	2 cut(s)	92, 305
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	159, 303, 333
SetI	ASST	5 cut(s)	81, 238, 294, 323, 408
SfaNI	GCATC	3 cut(s)	228, 254, 426
SinI	GGWCC	1 cut(s)	305
Sse9I	AATT	2 cut(s)	195, 364
SsiI	CCGC	1 cut(s)	299
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	3 cut(s)	157, 301, 331
StyI	CCWWGG	1 cut(s)	223
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	1 cut(s)	38
TasI	AATT	2 cut(s)	195, 364
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	17, 417
TspRI	CASTG	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	195
XceI	RCATGY	1 cut(s)	56
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.