Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007456

Physical Location & Seq

Genomic Coordinates Reverse (-)

34465891 .. 34466562

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1270300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGAGCAGAAAATGTTGGGAATCGTCATCCACGTTCGAAGGAGTCGGGCGTTGCTTTGACCGGAACAGCAATTGCAAAGGAAGGTAGTGGCGGTGTTGTCGACATTGGCGAGAGCGAAGCTGCGTACCTTGCTCGAGTTGCACTTCCTGGTAACGTAAAATGTGTTATCCAACGTGATGGAAAGGTTCATATACAAGGAGTCATGAGCGGTGTTGAACTTTTGAGAAACTCATCAACTGTGTACCATATGAGAGTCCAGCACCTATGCCCGCCTGGACCATTTGCCGTTTCTTTCACTCTTCCCGGACCTGTTGACCCCCGTCTCTTTTCTCCCCATTTCCGGCATGATGGACTCCTCGAGATCGTCCTTCTCAAATCCAGCAAATTAAGCAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

134

Amino Acids

14.18

Weight (kDa)

9.51

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76440 AT1G76440 AT1G76440
fragaria_vesca	FvH4_5g25970 FvH4_5g25970
malus_domestica	MD09G1270300.v1.1 MD17G1268400.v1.1
prunus_persica	Prupe.5G006000_v2.0.a1
pyrus_communis	pycom09g18150
rosa_chinensis	RchiOBHm_Chr4g0409731
rosa_laevigata	RLG00000008528
rosa_multiflora	Rmu_sc0008746.1_g000001 Rmu_sc0013436.1_g000001 Rmu_sc0015305.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354290
rosa_rugosa	Rorug04G0096500 Rorug07G0160800
rosa_samantha	Rh4AG157700 Rh4BG157500 Rh4CG168300 Rh4DG152100 Rh7BG292000 Rh7DG301300
rosa_wichuraiana	Rw4G012900 Rw4G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	3 cut(s)	93, 210, 272
AfaI	GTAC	2 cut(s)	128, 245
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	1 cut(s)	218
AjnI	CCWGG	2 cut(s)	148, 274
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	329
Ama87I	CYCGRG	2 cut(s)	135, 359
ApeKI	GCWGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	278, 308
AsuC2I	CCSGG	1 cut(s)	306
AsuII	TTCGAA	1 cut(s)	38
AvaI	CYCGRG	2 cut(s)	135, 359
AvaII	GGWCC	2 cut(s)	278, 308
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	2 cut(s)	173, 344
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	150, 276
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	329
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	3 cut(s)	150, 276, 306
Bme18I	GGWCC	2 cut(s)	278, 308
BmeT110I	CYCGRG	2 cut(s)	135, 359
BmgT120I	GGNCC	2 cut(s)	278, 308
BmrFI	CCNGG	3 cut(s)	150, 276, 306
BoxI	GACNNNNGTC	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	150, 276
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	109
BsiHKCI	CYCGRG	2 cut(s)	135, 359
BsiSI	CCGG	3 cut(s)	63, 306, 343
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	329
BsmBI	CGTCTC	1 cut(s)	329
BsoBI	CYCGRG	2 cut(s)	135, 359
Bsp119I	TTCGAA	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	363
BspACI	CCGC	3 cut(s)	93, 210, 272
BspHI	TCATGA	1 cut(s)	204
BspT104I	TTCGAA	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	210
BssMI	GATC	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	150, 276
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 140, 390
BstNI	CCWGG	2 cut(s)	150, 276
BstPAI	GACNNNNGTC	1 cut(s)	321
BstSCI	CCNGG	3 cut(s)	148, 274, 304
BstV1I	GCAGC	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	272
CciI	TCATGA	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	278, 308
Csp6I	GTAC	2 cut(s)	127, 244
CviAII	CATG	2 cut(s)	205, 347
CviJI	RGCY	1 cut(s)	122
CviKI_1	RGCY	1 cut(s)	122
CviQI	GTAC	2 cut(s)	127, 244
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	278, 308
Eco88I	CYCGRG	2 cut(s)	135, 359
EcoRII	CCWGG	2 cut(s)	148, 274
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	2 cut(s)	208, 350
FaiI	YATR	7 cut(s)	192, 194, 206, 249, 251, 268, 348
FatI	CATG	2 cut(s)	204, 346
FauI	CCCGC	1 cut(s)	279
FauNDI	CATATG	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	123
HapII	CCGG	3 cut(s)	63, 306, 343
Hin1II	CATG	2 cut(s)	208, 350
HincII	GTYRAC	2 cut(s)	103, 316
HindII	GTYRAC	2 cut(s)	103, 316
HinfI	GANTC	5 cut(s)	22, 44, 201, 255, 354
HpaII	CCGG	3 cut(s)	63, 306, 343
Hpy166II	GTNNAC	3 cut(s)	103, 244, 316
Hpy188III	TCNNGA	2 cut(s)	205, 361
Hpy8I	GTNNAC	3 cut(s)	103, 244, 316
HpyAV	CCTTC	3 cut(s)	34, 77, 380
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	3 cut(s)	34, 156, 175
HpyCH4V	TGCA	2 cut(s)	77, 143
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 140, 390
HpySE526I	ACGT	3 cut(s)	34, 156, 175
Hsp92II	CATG	2 cut(s)	208, 350
Kzo9I	GATC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	1 cut(s)	109
MaeII	ACGT	3 cut(s)	34, 156, 175
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	1 cut(s)	365
MbiI	CCGCTC	1 cut(s)	210
MboI	GATC	1 cut(s)	363
MboII	GAAGA	1 cut(s)	293
MfeI	CAATTG	1 cut(s)	72
MluCI	AATT	2 cut(s)	72, 386
MlyI	GAGTC	4 cut(s)	53, 210, 264, 348
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	389
MspI	CCGG	3 cut(s)	63, 306, 343
MspR9I	CCNGG	3 cut(s)	150, 276, 306
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	2 cut(s)	150, 276
MwoI	GCNNNNNNNGC	3 cut(s)	131, 140, 390
NciI	CCSGG	1 cut(s)	306
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	2 cut(s)	208, 350
NspV	TTCGAA	1 cut(s)	38
PaeR7I	CTCGAG	2 cut(s)	135, 359
PagI	TCATGA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	2 cut(s)	31, 108
PfeI	GAWTC	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	4 cut(s)	52, 209, 263, 348
PpsI	GAGTC	4 cut(s)	52, 209, 263, 348
PshAI	GACNNNNGTC	1 cut(s)	321
Psp6I	CCWGG	2 cut(s)	148, 274
PspGI	CCWGG	2 cut(s)	148, 274
PspPI	GGNCC	2 cut(s)	278, 308
PspXI	VCTCGAGB	1 cut(s)	135
RsaI	GTAC	2 cut(s)	128, 245
RsaNI	GTAC	2 cut(s)	127, 244
SalI	GTCGAC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	2 cut(s)	278, 308
SchI	GAGTC	4 cut(s)	53, 210, 264, 348
ScrFI	CCNGG	3 cut(s)	150, 276, 306
SetI	ASST	9 cut(s)	37, 88, 124, 132, 159, 178, 189, 267, 313
Sfr274I	CTCGAG	2 cut(s)	135, 359
SfuI	TTCGAA	1 cut(s)	38
SinI	GGWCC	2 cut(s)	278, 308
SlaI	CTCGAG	2 cut(s)	135, 359
SmlI	CTYRAG	2 cut(s)	135, 359
SmoI	CTYRAG	2 cut(s)	135, 359
Sse9I	AATT	2 cut(s)	72, 386
SsiI	CCGC	3 cut(s)	93, 210, 272
StyD4I	CCNGG	3 cut(s)	148, 274, 304
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	3 cut(s)	37, 159, 178
TaqI	TCGA	4 cut(s)	38, 102, 136, 360
TasI	AATT	2 cut(s)	72, 386
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	278, 308
XhoI	CTCGAG	2 cut(s)	135, 359
XmiI	GTMKAC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.