Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007456

Physical Location & Seq

Genomic Coordinates Forward (+)

27433495 .. 27434017

Gene Structure 523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG292000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTGCCAACTTATTTCGAGCAGCAGTTCCGGGACGTCTTCGGAGGAAACAAACTGAGATTCTTTGTCTGTAATTTTCATCATATATGTTCCTCTCATACTTGGATGCACAAGCACTATTTTTGCACTGGTACAGTTAAATGTATCATCGGAAGTGAAGGGAAGGTTCATATTAAAGGAGTCATGACTCATGACGGAGACCGGACTTGTCGTAAACTCATCAACTTGTACAAAATGAAAGTCGACCAGGAACTATGTGCAGCTGGACCATTTACCATCTCTTTTAATCTTCCAGGATCTGTTGATACTAGGCTGTTTTCTCCTGGCTTTCGGCCAGATGGAATCCTGGAAGTGGTGGTTATGAAATCCAAAATGTCTCGGCAATTCCTCAAGTTCCCTTTTAATGGTAACAAGTCTTCCCCTGTCAAGTTTCCCCAAGTAACCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

149

Amino Acids

17.06

Weight (kDa)

9.56

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76440 AT1G76440 AT1G76440
fragaria_vesca	FvH4_5g25970 FvH4_5g25970
malus_domestica	MD09G1270300.v1.1 MD17G1268400.v1.1
prunus_persica	Prupe.5G006000_v2.0.a1
pyrus_communis	pycom09g18150
rosa_chinensis	RchiOBHm_Chr4g0409731
rosa_laevigata	RLG00000008528
rosa_multiflora	Rmu_sc0008746.1_g000001 Rmu_sc0013436.1_g000001 Rmu_sc0015305.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354290
rosa_rugosa	Rorug04G0096500 Rorug07G0160800
rosa_samantha	Rh4AG157700 Rh4BG157500 Rh4CG168300 Rh4DG152100 Rh7BG292000 Rh7DG301300
rosa_wichuraiana	Rw4G012900 Rw4G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	243
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	2 cut(s)	133, 230
AfiI	CCNNNNNNNGG	2 cut(s)	352, 404
AjnI	CCWGG	4 cut(s)	246, 292, 322, 345
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	2 cut(s)	192, 381
AlwI	GGATC	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	3 cut(s)	4, 22, 260
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	266
BarI	GAAGNNNNNNTAC	2 cut(s)	400, 432
BbsI	GAAGAC	2 cut(s)	31, 408
BbvI	GCAGC	2 cut(s)	34, 272
BccI	CCATC	2 cut(s)	284, 332
BciT130I	CCWGG	4 cut(s)	248, 294, 324, 347
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	2 cut(s)	192, 381
BfaI	CTAG	1 cut(s)	309
BisI	GCNGC	3 cut(s)	5, 23, 261
BlsI	GCNGC	3 cut(s)	6, 24, 262
Bme1390I	CCNGG	5 cut(s)	32, 248, 294, 324, 347
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	5 cut(s)	32, 248, 294, 324, 347
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	2 cut(s)	31, 408
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 404
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	4 cut(s)	248, 294, 324, 347
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	352, 404
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	34, 272
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	31, 202
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	352, 404
BsmAI	GTCTC	2 cut(s)	192, 381
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	334
Bso31I	GGTCTC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	1 cut(s)	48
BspHI	TCATGA	2 cut(s)	183, 190
BspPI	GGATC	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	296
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	4 cut(s)	248, 294, 324, 347
Bst4CI	ACNGT	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	36
BstAUI	TGTACA	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	299
BstMAI	GTCTC	2 cut(s)	192, 381
BstMBI	GATC	1 cut(s)	296
BstNI	CCWGG	4 cut(s)	248, 294, 324, 347
BstSCI	CCNGG	5 cut(s)	30, 246, 292, 322, 345
BstV1I	GCAGC	2 cut(s)	34, 272
BstV2I	GAAGAC	2 cut(s)	31, 408
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	299
CciI	TCATGA	2 cut(s)	183, 190
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	132, 229
CviAII	CATG	2 cut(s)	184, 191
CviJI	RGCY	4 cut(s)	263, 313, 327, 334
CviKI_1	RGCY	4 cut(s)	263, 313, 327, 334
CviQI	GTAC	2 cut(s)	132, 229
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	266
EcoRII	CCWGG	4 cut(s)	246, 292, 322, 345
FaeI	CATG	2 cut(s)	187, 194
FaiI	YATR	9 cut(s)	84, 86, 88, 99, 171, 185, 192, 256, 362
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	183, 190
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	5, 23, 261
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	3 cut(s)	5, 23, 261
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	3 cut(s)	5, 23, 261
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	2 cut(s)	31, 202
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	187, 194
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	4 cut(s)	60, 180, 187, 342
HpaII	CCGG	2 cut(s)	31, 202
Hpy166II	GTNNAC	2 cut(s)	215, 244
Hpy188I	TCNGA	3 cut(s)	44, 152, 449
Hpy188III	TCNNGA	2 cut(s)	184, 191
Hpy8I	GTNNAC	2 cut(s)	215, 244
HpyAV	CCTTC	2 cut(s)	152, 157
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	109, 126, 260
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	187, 194
Kzo9I	GATC	1 cut(s)	296
Lsp1109I	GCAGC	2 cut(s)	34, 272
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	407, 439
MalI	GATC	1 cut(s)	298
MboI	GATC	1 cut(s)	296
MboII	GAAGA	3 cut(s)	31, 281, 408
MflI	RGATCY	1 cut(s)	296
MluCI	AATT	2 cut(s)	73, 383
MlyI	GAGTC	2 cut(s)	181, 189
MnlI	CCTC	3 cut(s)	38, 103, 398
MseI	TTAA	4 cut(s)	138, 174, 285, 402
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	2 cut(s)	31, 202
MspR9I	CCNGG	5 cut(s)	32, 248, 294, 324, 347
MvaI	CCWGG	4 cut(s)	248, 294, 324, 347
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	2 cut(s)	187, 194
NmeAIII	GCCGAG	1 cut(s)	358
PagI	TCATGA	2 cut(s)	183, 190
PfeI	GAWTC	2 cut(s)	60, 342
PfoI	TCCNGGA	3 cut(s)	30, 292, 345
PkrI	GCNGC	3 cut(s)	6, 24, 262
PleI	GAGTC	2 cut(s)	181, 188
PpsI	GAGTC	2 cut(s)	181, 188
Psp6I	CCWGG	4 cut(s)	246, 292, 322, 345
PspGI	CCWGG	4 cut(s)	246, 292, 322, 345
PspPI	GGNCC	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	2 cut(s)	133, 230
RsaNI	GTAC	2 cut(s)	132, 229
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	4 cut(s)	138, 174, 285, 402
SatI	GCNGC	3 cut(s)	5, 23, 261
Sau3AI	GATC	1 cut(s)	296
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	2 cut(s)	181, 189
ScrFI	CCNGG	5 cut(s)	32, 248, 294, 324, 347
SetI	ASST	3 cut(s)	39, 168, 265
SfaNI	GCATC	1 cut(s)	96
SinI	GGWCC	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	2 cut(s)	73, 383
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	5 cut(s)	30, 246, 292, 322, 345
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	18, 243
TasI	AATT	2 cut(s)	73, 383
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	60, 342
Tru1I	TTAA	4 cut(s)	138, 174, 285, 402
Tru9I	TTAA	4 cut(s)	138, 174, 285, 402
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	3 cut(s)	4, 22, 260
TspDTI	ATGAA	4 cut(s)	68, 158, 251, 377
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	1 cut(s)	309
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.