Rroxscaffold_5G00354290

Belongs to the small heat shock protein (HSP20) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
32749086 .. 32752693
3608 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00354290.1

Sequence Viewer

Length: 474 bp
ATGAACAGCCAAAATGTTGGTTACCATCCATGTCTGAAGCCAGCTGTTGTTATAACTGGAACGGCAAATGAAGGTACTGCTGGACCACCTGTCGGTCATGTTGACATTGGAGTGAGTGATGCTGCCTACTTATTTCGAGTTGCACTTCCAGGTCTTCGGAGGAAACAAAGTACAGTGAAATGTATGATTGAAAGTGACGGGAAGGTTCATATTGAAGGAGTCATGACAGAGACTGGACTTATCATAAACTCATCAACTGTGTACCAGATGAAAGTCCAGCAACTATGTGCAGCTGGACCATTTACCATCTCTTTTAATCTTCCTGGTTCTGTTGATACTCGACTGTTTTCTCCTGTCTTTCGGCCAGATGGAATCCTGGAAGTGGTGGTTTTGAAATCCAAAATGTCTTCAGAACTCTATCCATTTGATGGCAACAAGTCTTCCCCTGTCAAGTTTCCCCAAGTAACCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

16.83

Weight (kDa)

8.46

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 362
AcuI CTGAAG 2 cut(s) 56, 393
AfaI GTAC 3 cut(s) 76, 172, 263
AfiI CCNNNNNNNGG 3 cut(s) 92, 382, 428
AgsI TTSAA 3 cut(s) 191, 215, 394
AhdI GACNNNNNGTC 1 cut(s) 89
AjnI CCWGG 3 cut(s) 148, 322, 375
AluBI AGCT 2 cut(s) 44, 293
AluI AGCT 2 cut(s) 44, 293
Alw26I GTCTC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 2 cut(s) 122, 290
AspS9I GGNCC 2 cut(s) 83, 296
AvaII GGWCC 2 cut(s) 83, 296
BbsI GAAGAC 3 cut(s) 146, 399, 432
BbvI GCAGC 2 cut(s) 109, 302
BccI CCATC 4 cut(s) 33, 314, 362, 422
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 3 cut(s) 150, 324, 377
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 2 cut(s) 123, 291
BlsI GCNGC 2 cut(s) 124, 292
Bme1390I CCNGG 3 cut(s) 150, 324, 377
Bme18I GGWCC 2 cut(s) 83, 296
BmeRI GACNNNNNGTC 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 83, 296
BmrFI CCNGG 3 cut(s) 150, 324, 377
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 3 cut(s) 146, 399, 432
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 382, 428
Bse1I ACTGG 2 cut(s) 61, 238
BseBI CCWGG 3 cut(s) 150, 324, 377
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 3 cut(s) 92, 382, 428
BseNI ACTGG 2 cut(s) 61, 238
BseXI GCAGC 2 cut(s) 109, 302
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 1 cut(s) 364
BslI CCNNNNNNNGG 3 cut(s) 92, 382, 428
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 364
BspANI GGCC 1 cut(s) 364
BspHI TCATGA 1 cut(s) 222
BsrI ACTGG 2 cut(s) 61, 238
Bst2UI CCWGG 3 cut(s) 150, 324, 377
Bst4CI ACNGT 4 cut(s) 175, 259, 345, 469
BstC8I GCNNGC 1 cut(s) 42
BstEII GGTNACC 1 cut(s) 20
BstF5I GGATG 1 cut(s) 25
BstMAI GTCTC 1 cut(s) 224
BstNI CCWGG 3 cut(s) 150, 324, 377
BstPI GGTNACC 1 cut(s) 20
BstSCI CCNGG 3 cut(s) 148, 322, 375
BstV1I GCAGC 2 cut(s) 109, 302
BstV2I GAAGAC 3 cut(s) 146, 399, 432
BstXI CCANNNNNNTGG 1 cut(s) 17
BsuRI GGCC 1 cut(s) 364
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 233
CciI TCATGA 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 83, 296
Csp6I GTAC 3 cut(s) 75, 171, 262
CviAII CATG 3 cut(s) 30, 98, 223
CviJI RGCY 5 cut(s) 9, 40, 44, 293, 364
CviKI_1 RGCY 5 cut(s) 9, 40, 44, 293, 364
CviQI GTAC 3 cut(s) 75, 171, 262
DriI GACNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 362
Eam1105I GACNNNNNGTC 1 cut(s) 89
Eco47I GGWCC 2 cut(s) 83, 296
Eco57I CTGAAG 2 cut(s) 56, 393
Eco91I GGTNACC 1 cut(s) 20
EcoO65I GGTNACC 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 148, 322, 375
FaeI CATG 3 cut(s) 33, 101, 226
FaiI YATR 8 cut(s) 31, 53, 99, 185, 210, 224, 245, 286
FatI CATG 3 cut(s) 29, 97, 222
Fnu4HI GCNGC 2 cut(s) 123, 291
FokI GGATG 1 cut(s) 12
Fsp4HI GCNGC 2 cut(s) 123, 291
GluI GCNGC 2 cut(s) 123, 291
HaeIII GGCC 1 cut(s) 364
Hin1II CATG 3 cut(s) 33, 101, 226
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 2 cut(s) 219, 372
Hpy166II GTNNAC 2 cut(s) 103, 262
Hpy188I TCNGA 4 cut(s) 36, 159, 412, 473
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 2 cut(s) 103, 262
HpyAV CCTTC 3 cut(s) 65, 196, 209
HpyCH4III ACNGT 4 cut(s) 175, 259, 345, 469
HpyCH4V TGCA 2 cut(s) 143, 290
Hsp92II CATG 3 cut(s) 33, 101, 226
Lsp1109I GCAGC 2 cut(s) 109, 302
LweI GCATC 1 cut(s) 109
MaeIII GTNAC 3 cut(s) 20, 194, 463
MboII GAAGA 4 cut(s) 146, 311, 399, 432
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 1 cut(s) 153
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 2 cut(s) 44, 293
MspR9I CCNGG 3 cut(s) 150, 324, 377
MvaI CCWGG 3 cut(s) 150, 324, 377
NlaIII CATG 3 cut(s) 33, 101, 226
NmuCI GTSAC 1 cut(s) 194
PagI TCATGA 1 cut(s) 222
PfeI GAWTC 1 cut(s) 372
PflMI CCANNNNNTGG 1 cut(s) 428
PfoI TCCNGGA 1 cut(s) 375
PkrI GCNGC 2 cut(s) 124, 292
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PsiI TTATAA 1 cut(s) 53
Psp6I CCWGG 3 cut(s) 148, 322, 375
PspEI GGTNACC 1 cut(s) 20
PspGI CCWGG 3 cut(s) 148, 322, 375
PspPI GGNCC 2 cut(s) 83, 296
PstNI CAGNNNCTG 1 cut(s) 233
PvuII CAGCTG 2 cut(s) 44, 293
RsaI GTAC 3 cut(s) 76, 172, 263
RsaNI GTAC 3 cut(s) 75, 171, 262
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 123, 291
Sau96I GGNCC 2 cut(s) 83, 296
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 3 cut(s) 150, 324, 377
SetI ASST 6 cut(s) 46, 76, 91, 154, 207, 295
SfaNI GCATC 1 cut(s) 109
SinI GGWCC 2 cut(s) 83, 296
SmiMI CAYNNNNRTG 1 cut(s) 110
StyD4I CCNGG 3 cut(s) 148, 322, 375
TaaI ACNGT 4 cut(s) 175, 259, 345, 469
TaqI TCGA 2 cut(s) 136, 340
TaqII GACCGA 1 cut(s) 83
TatI WGTACW 1 cut(s) 170
TfiI GAWTC 1 cut(s) 372
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 2 cut(s) 122, 290
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 4 cut(s) 17, 84, 197, 284
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 428
VpaK11BI GGWCC 2 cut(s) 83, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.