Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007456

Physical Location & Seq

Genomic Coordinates Reverse (-)

31689272 .. 31692305

Gene Structure 3034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008528

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGACAGCCAAAATGTTGGTTACCATCCATGTCTGAAGCCAGCTGTTGTTATAACTGGAACAGCAAATGAAGGTACTGCTGGACCAGCTATTGGTCATGTTGACATTGGCGTGAGTGATGCTGCCTACTTATTTCGAGTTGCACTTCCAGGTCTTCGGAGGAAACAAAGTACAATAAAATGTATGATTGAAAGTGACGGGAAGGTTCATATTGAAGGAGTCATGACAGAGACTGGACTTGTCTTAAACTCATCAACTGTGTACCAGATGAAAGTCCAGCAACTATGTGCAGCTGGACCATTCACCATCTCTTTTAATCTTCCTGGATCTGTTGATACTCGACTGTTTTCTCCTGTCTTTCGGCCAGATGGAATCCTGGAAGTGGTGGTTTTGAAATCCAAAATGTCTTCAGAATTCCTCTATCCATCTGATGGCAACAAGTCTTCCCCTGTCAAGTTTCCCCAAGTGTCCACTTTCCATTGGTTGTGGCGTCTGATCCTCGTCTCTAACCTAAAAACACCGCCGATATCTTTTTGTCTCTTCATCAGTTCATCGAAGCCGGGCAAGCTTCTCTTTGCATCTCTCTCAGAGTCTCAGTCTTTTGTAGATTCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

206

Amino Acids

22.2

Weight (kDa)

8.6

Isoelectric Point (pI)

57.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76440 AT1G76440 AT1G76440
fragaria_vesca	FvH4_5g25970 FvH4_5g25970
malus_domestica	MD09G1270300.v1.1 MD17G1268400.v1.1
prunus_persica	Prupe.5G006000_v2.0.a1
pyrus_communis	pycom09g18150
rosa_chinensis	RchiOBHm_Chr4g0409731
rosa_laevigata	RLG00000008528
rosa_multiflora	Rmu_sc0008746.1_g000001 Rmu_sc0013436.1_g000001 Rmu_sc0015305.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354290
rosa_rugosa	Rorug04G0096500 Rorug07G0160800
rosa_samantha	Rh4AG157700 Rh4BG157500 Rh4CG168300 Rh4DG152100 Rh7BG292000 Rh7DG301300
rosa_wichuraiana	Rw4G012900 Rw4G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AccB7I	CCANNNNNTGG	2 cut(s)	92, 431
AciI	CCGC	1 cut(s)	521
AclWI	GGATC	2 cut(s)	334, 490
AcoI	YGGCCR	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	413
AcuI	CTGAAG	2 cut(s)	56, 393
AcyI	GRCGYC	1 cut(s)	490
AfaI	GTAC	3 cut(s)	76, 172, 263
AfiI	CCNNNNNNNGG	3 cut(s)	92, 382, 431
AgsI	TTSAA	3 cut(s)	191, 215, 394
AjnI	CCWGG	3 cut(s)	148, 322, 375
AluBI	AGCT	4 cut(s)	44, 89, 293, 568
AluI	AGCT	4 cut(s)	44, 89, 293, 568
Alw26I	GTCTC	4 cut(s)	224, 508, 542, 597
AlwI	GGATC	2 cut(s)	334, 490
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	122, 290
ApoI	RAATTY	1 cut(s)	413
AspS9I	GGNCC	2 cut(s)	83, 296
AsuC2I	CCSGG	1 cut(s)	561
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	2 cut(s)	83, 296
BbsI	GAAGAC	3 cut(s)	146, 399, 435
BbvI	GCAGC	2 cut(s)	109, 302
BccI	CCATC	5 cut(s)	33, 314, 362, 425, 433
BciT130I	CCWGG	3 cut(s)	150, 324, 377
BcnI	CCSGG	1 cut(s)	561
BcoDI	GTCTC	4 cut(s)	224, 508, 542, 597
BisI	GCNGC	2 cut(s)	123, 291
BlsI	GCNGC	2 cut(s)	124, 292
Bme1390I	CCNGG	4 cut(s)	150, 324, 377, 561
Bme18I	GGWCC	2 cut(s)	83, 296
BmgT120I	GGNCC	2 cut(s)	83, 296
BmrFI	CCNGG	4 cut(s)	150, 324, 377, 561
BmsI	GCATC	2 cut(s)	109, 587
BpiI	GAAGAC	3 cut(s)	146, 399, 435
BpuMI	CCSGG	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 382, 431
Bse1I	ACTGG	2 cut(s)	61, 238
BseBI	CCWGG	3 cut(s)	150, 324, 377
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	3 cut(s)	92, 382, 431
BseMII	CTCAG	2 cut(s)	600, 608
BseNI	ACTGG	2 cut(s)	61, 238
BseXI	GCAGC	2 cut(s)	109, 302
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	560
BslI	CCNNNNNNNGG	3 cut(s)	92, 382, 431
BsmAI	GTCTC	4 cut(s)	224, 508, 542, 597
BsmBI	CGTCTC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	326, 495
BspACI	CCGC	1 cut(s)	521
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	2 cut(s)	599, 607
BspHI	TCATGA	1 cut(s)	222
BspPI	GGATC	2 cut(s)	334, 490
BsrI	ACTGG	2 cut(s)	61, 238
BssMI	GATC	2 cut(s)	326, 495
BssNI	GRCGYC	1 cut(s)	490
Bst2UI	CCWGG	3 cut(s)	150, 324, 377
Bst4CI	ACNGT	2 cut(s)	259, 345
Bst6I	CTCTTC	1 cut(s)	545
BstACI	GRCGYC	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	42, 566
BstDEI	CTNAG	2 cut(s)	586, 594
BstEII	GGTNACC	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	329, 498
BstMAI	GTCTC	4 cut(s)	224, 508, 542, 597
BstMBI	GATC	2 cut(s)	326, 495
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 565
BstNI	CCWGG	3 cut(s)	150, 324, 377
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	4 cut(s)	148, 322, 375, 559
BstV1I	GCAGC	2 cut(s)	109, 302
BstV2I	GAAGAC	3 cut(s)	146, 399, 435
BstX2I	RGATCY	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	42, 566
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	83, 296
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	3 cut(s)	75, 171, 262
CviAII	CATG	3 cut(s)	30, 98, 223
CviJI	RGCY	8 cut(s)	9, 40, 44, 89, 293, 364, 559, 568
CviKI_1	RGCY	8 cut(s)	9, 40, 44, 89, 293, 364, 559, 568
CviQI	GTAC	3 cut(s)	75, 171, 262
DdeI	CTNAG	2 cut(s)	586, 594
DpnI	GATC	2 cut(s)	328, 497
DpnII	GATC	2 cut(s)	326, 495
EaeI	YGGCCR	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco32I	GATATC	1 cut(s)	528
Eco47I	GGWCC	2 cut(s)	83, 296
Eco57I	CTGAAG	2 cut(s)	56, 393
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	3 cut(s)	148, 322, 375
EcoRV	GATATC	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	508
FaeI	CATG	3 cut(s)	33, 101, 226
FaiI	YATR	7 cut(s)	31, 53, 99, 185, 210, 224, 286
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FatI	CATG	3 cut(s)	29, 97, 222
Fnu4HI	GCNGC	2 cut(s)	123, 291
FokI	GGATG	1 cut(s)	12
Fsp4HI	GCNGC	2 cut(s)	123, 291
GluI	GCNGC	2 cut(s)	123, 291
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	1 cut(s)	560
HgaI	GACGC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	490
Hin1II	CATG	3 cut(s)	33, 101, 226
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	4 cut(s)	219, 372, 590, 608
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	3 cut(s)	103, 262, 471
Hpy188I	TCNGA	6 cut(s)	36, 159, 412, 430, 495, 589
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	3 cut(s)	103, 262, 471
HpyAV	CCTTC	3 cut(s)	65, 196, 209
HpyCH4III	ACNGT	2 cut(s)	259, 345
HpyCH4V	TGCA	3 cut(s)	143, 290, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 565
HpyF3I	CTNAG	2 cut(s)	586, 594
Hsp92I	GRCGYC	1 cut(s)	490
Hsp92II	CATG	3 cut(s)	33, 101, 226
Kzo9I	GATC	2 cut(s)	326, 495
Lsp1109I	GCAGC	2 cut(s)	109, 302
LweI	GCATC	2 cut(s)	109, 587
MaeIII	GTNAC	2 cut(s)	20, 194
MalI	GATC	2 cut(s)	328, 497
MboI	GATC	2 cut(s)	326, 495
MboII	GAAGA	5 cut(s)	146, 311, 399, 435, 532
MflI	RGATCY	1 cut(s)	326
MluCI	AATT	1 cut(s)	413
MlyI	GAGTC	2 cut(s)	228, 599
MnlI	CCTC	3 cut(s)	153, 428, 509
MseI	TTAA	2 cut(s)	245, 315
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	2 cut(s)	44, 293
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	4 cut(s)	150, 324, 377, 561
MvaI	CCWGG	3 cut(s)	150, 324, 377
MwoI	GCNNNNNNNGC	2 cut(s)	86, 565
NciI	CCSGG	1 cut(s)	561
NdeII	GATC	2 cut(s)	326, 495
NlaIII	CATG	3 cut(s)	33, 101, 226
NmuCI	GTSAC	1 cut(s)	194
PagI	TCATGA	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	372, 608
PflMI	CCANNNNNTGG	2 cut(s)	92, 431
PfoI	TCCNGGA	2 cut(s)	322, 375
PkrI	GCNGC	2 cut(s)	124, 292
PleI	GAGTC	2 cut(s)	227, 598
PpsI	GAGTC	2 cut(s)	227, 598
PsiI	TTATAA	1 cut(s)	53
Psp6I	CCWGG	3 cut(s)	148, 322, 375
PspEI	GGTNACC	1 cut(s)	20
PspGI	CCWGG	3 cut(s)	148, 322, 375
PspPI	GGNCC	2 cut(s)	83, 296
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	326
PvuII	CAGCTG	2 cut(s)	44, 293
RsaI	GTAC	3 cut(s)	76, 172, 263
RsaNI	GTAC	3 cut(s)	75, 171, 262
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	245, 315
SatI	GCNGC	2 cut(s)	123, 291
Sau3AI	GATC	2 cut(s)	326, 495
Sau96I	GGNCC	2 cut(s)	83, 296
SchI	GAGTC	2 cut(s)	228, 599
ScrFI	CCNGG	4 cut(s)	150, 324, 377, 561
SetI	ASST	8 cut(s)	46, 76, 91, 154, 207, 295, 513, 570
SfaNI	GCATC	2 cut(s)	109, 587
SinI	GGWCC	2 cut(s)	83, 296
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	413
SsiI	CCGC	1 cut(s)	521
StyD4I	CCNGG	4 cut(s)	148, 322, 375, 559
TaaI	ACNGT	2 cut(s)	259, 345
TaqI	TCGA	3 cut(s)	136, 340, 554
TasI	AATT	1 cut(s)	413
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	2 cut(s)	372, 608
Tru1I	TTAA	2 cut(s)	245, 315
Tru9I	TTAA	2 cut(s)	245, 315
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	122, 290
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	5 cut(s)	84, 197, 284, 532, 540
Van91I	CCANNNNNTGG	2 cut(s)	92, 431
VpaK11BI	GGWCC	2 cut(s)	83, 296
XapI	RAATTY	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.