Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007456

Physical Location & Seq

Genomic Coordinates Forward (+)

34578255 .. 34578777

Gene Structure 523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG301300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTGCCAACTTATTTCGAGCAGCAGTTCCTGGACGTCTTCGGAGGAAACAAACTGAGATTCTTTGTCTGTAATTTTCATCATATATGCGCCTCTCATACTTGGATGCACAAGCACTATTTTTGCACTGGTACAGTTAAATGTATCATCGGAAGTGAAGGGAAGGTTCATATTGAAGGAGTCATGACTCATGACGGAGACCGGACTTGTCGTAAACTCATCAACTTGTACCAAATGAAAGTCCAGGAACTATGTGCAGCTGGACCATTTACCATCTCTTTTAATCTTCCAGGATCTGTTGATACTCGGCTGTTTTCTCCTGGCTTTCGGCCAGATGGAATCCTGGAAGTGGTGGTTATGAAATCCAAAATGTCTCGGCAATTCCTCAAGTTCCCTTTTAATGGTAACAAGTCTTCCCCTGTCAAGTTTCCCCAAGTAACGACCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

149

Amino Acids

16.98

Weight (kDa)

9.26

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76440 AT1G76440 AT1G76440
fragaria_vesca	FvH4_5g25970 FvH4_5g25970
malus_domestica	MD09G1270300.v1.1 MD17G1268400.v1.1
prunus_persica	Prupe.5G006000_v2.0.a1
pyrus_communis	pycom09g18150
rosa_chinensis	RchiOBHm_Chr4g0409731
rosa_laevigata	RLG00000008528
rosa_multiflora	Rmu_sc0008746.1_g000001 Rmu_sc0013436.1_g000001 Rmu_sc0015305.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354290
rosa_rugosa	Rorug04G0096500 Rorug07G0160800
rosa_samantha	Rh4AG157700 Rh4BG157500 Rh4CG168300 Rh4DG152100 Rh7BG292000 Rh7DG301300
rosa_wichuraiana	Rw4G012900 Rw4G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	2 cut(s)	133, 230
AfiI	CCNNNNNNNGG	2 cut(s)	349, 401
AgsI	TTSAA	1 cut(s)	176
AjnI	CCWGG	5 cut(s)	30, 243, 289, 319, 342
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	2 cut(s)	192, 378
AlwI	GGATC	1 cut(s)	301
AlwNI	CAGNNNCTG	2 cut(s)	31, 296
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	3 cut(s)	4, 22, 257
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BarI	GAAGNNNNNNTAC	2 cut(s)	397, 429
BbsI	GAAGAC	2 cut(s)	31, 405
BbvI	GCAGC	2 cut(s)	34, 269
BccI	CCATC	2 cut(s)	281, 329
BciT130I	CCWGG	5 cut(s)	32, 245, 291, 321, 344
BcoDI	GTCTC	2 cut(s)	192, 378
BisI	GCNGC	3 cut(s)	5, 23, 258
BlsI	GCNGC	3 cut(s)	6, 24, 259
Bme1390I	CCNGG	5 cut(s)	32, 245, 291, 321, 344
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	5 cut(s)	32, 245, 291, 321, 344
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	2 cut(s)	31, 405
BpuEI	CTTGAG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 401
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	5 cut(s)	32, 245, 291, 321, 344
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	349, 401
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	34, 269
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	349, 401
BsmAI	GTCTC	2 cut(s)	192, 378
BsnI	GGCC	1 cut(s)	331
Bso31I	GGTCTC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	293
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	1 cut(s)	48
BspHI	TCATGA	2 cut(s)	183, 190
BspPI	GGATC	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	293
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	5 cut(s)	32, 245, 291, 321, 344
Bst4CI	ACNGT	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	2 cut(s)	192, 378
BstMBI	GATC	1 cut(s)	293
BstNI	CCWGG	5 cut(s)	32, 245, 291, 321, 344
BstSCI	CCNGG	5 cut(s)	30, 243, 289, 319, 342
BstV1I	GCAGC	2 cut(s)	34, 269
BstV2I	GAAGAC	2 cut(s)	31, 405
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	126
CaiI	CAGNNNCTG	2 cut(s)	31, 296
CciI	TCATGA	2 cut(s)	183, 190
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	132, 229
CviAII	CATG	2 cut(s)	184, 191
CviJI	RGCY	4 cut(s)	260, 310, 324, 331
CviKI_1	RGCY	4 cut(s)	260, 310, 324, 331
CviQI	GTAC	2 cut(s)	132, 229
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	263
EcoRII	CCWGG	5 cut(s)	30, 243, 289, 319, 342
FaeI	CATG	2 cut(s)	187, 194
FaiI	YATR	9 cut(s)	84, 86, 88, 99, 171, 185, 192, 253, 359
FatI	CATG	2 cut(s)	183, 190
Fnu4HI	GCNGC	3 cut(s)	5, 23, 258
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	3 cut(s)	5, 23, 258
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	3 cut(s)	5, 23, 258
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	187, 194
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	4 cut(s)	60, 180, 187, 339
HpaII	CCGG	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	44, 152, 449
Hpy188III	TCNNGA	2 cut(s)	184, 191
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	152, 157, 170
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	109, 126, 257
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	187, 194
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	293
Lsp1109I	GCAGC	2 cut(s)	34, 269
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	404, 436
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	3 cut(s)	31, 278, 405
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	2 cut(s)	73, 380
MlyI	GAGTC	2 cut(s)	181, 189
MnlI	CCTC	3 cut(s)	38, 103, 395
MseI	TTAA	3 cut(s)	138, 282, 399
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	5 cut(s)	32, 245, 291, 321, 344
MvaI	CCWGG	5 cut(s)	32, 245, 291, 321, 344
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	2 cut(s)	187, 194
NmeAIII	GCCGAG	2 cut(s)	286, 355
PagI	TCATGA	2 cut(s)	183, 190
PfeI	GAWTC	2 cut(s)	60, 339
PfoI	TCCNGGA	4 cut(s)	30, 243, 289, 342
PkrI	GCNGC	3 cut(s)	6, 24, 259
PleI	GAGTC	2 cut(s)	181, 188
PpsI	GAGTC	2 cut(s)	181, 188
Psp6I	CCWGG	5 cut(s)	30, 243, 289, 319, 342
PspGI	CCWGG	5 cut(s)	30, 243, 289, 319, 342
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	2 cut(s)	31, 296
PsuI	RGATCY	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	133, 230
RsaNI	GTAC	2 cut(s)	132, 229
SaqAI	TTAA	3 cut(s)	138, 282, 399
SatI	GCNGC	3 cut(s)	5, 23, 258
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	181, 189
ScrFI	CCNGG	5 cut(s)	32, 245, 291, 321, 344
SetI	ASST	3 cut(s)	39, 168, 262
SfaNI	GCATC	1 cut(s)	96
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	73, 380
StyD4I	CCNGG	5 cut(s)	30, 243, 289, 319, 342
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	73, 380
TfiI	GAWTC	2 cut(s)	60, 339
Tru1I	TTAA	3 cut(s)	138, 282, 399
Tru9I	TTAA	3 cut(s)	138, 282, 399
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	3 cut(s)	4, 22, 257
TspDTI	ATGAA	4 cut(s)	68, 158, 251, 374
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.