Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013436.1

Orthogroup ID

OG0007456

Physical Location & Seq

Genomic Coordinates Reverse (-)

332 .. 888

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013436.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgtacgttgacactggcgtgagtactggcttgagtaatgctgccaacttatttcgagcagcagttcctggacgtcttcggaggaaacaaactgagattctttgtacagttaaatgtatcatcggaagtgaagggaaggttcatattgaaggagtcatgactcatgacggagaccggacttttcgtaaactcatcaacttgtaccaaatgaaagtccaggaactatgtgcagctggaccatttaccatctcttttaatcttccaggatctgttgatactcggctgttttctcctggctttcggccagatggaatcctggaagtggtggttatgaaatccaagatgtctcggcaattcctcaagttcccttttaatggtaacaagtcttcccctgtcaagtttccccaagtaaccatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

139

Amino Acids

15.4

Weight (kDa)

9.89

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76440 AT1G76440 AT1G76440
fragaria_vesca	FvH4_5g25970 FvH4_5g25970
malus_domestica	MD09G1270300.v1.1 MD17G1268400.v1.1
prunus_persica	Prupe.5G006000_v2.0.a1
pyrus_communis	pycom09g18150
rosa_chinensis	RchiOBHm_Chr4g0409731
rosa_laevigata	RLG00000008528
rosa_multiflora	Rmu_sc0008746.1_g000001 Rmu_sc0013436.1_g000001 Rmu_sc0015305.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354290
rosa_rugosa	Rorug04G0096500 Rorug07G0160800
rosa_samantha	Rh4AG157700 Rh4BG157500 Rh4CG168300 Rh4DG152100 Rh7BG292000 Rh7DG301300
rosa_wichuraiana	Rw4G012900 Rw4G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	76
AclWI	GGATC	1 cut(s)	274
AcoI	YGGCCR	1 cut(s)	302
AcyI	GRCGYC	1 cut(s)	73
AfaI	GTAC	4 cut(s)	5, 25, 106, 203
AfiI	CCNNNNNNNGG	2 cut(s)	322, 374
AgsI	TTSAA	1 cut(s)	149
AjnI	CCWGG	5 cut(s)	67, 216, 262, 292, 315
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	2 cut(s)	165, 351
AlwI	GGATC	1 cut(s)	274
AlwNI	CAGNNNCTG	2 cut(s)	68, 269
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	3 cut(s)	41, 59, 230
AspS9I	GGNCC	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	236
BarI	GAAGNNNNNNTAC	2 cut(s)	370, 402
BbsI	GAAGAC	2 cut(s)	68, 378
BbvI	GCAGC	3 cut(s)	28, 71, 242
BccI	CCATC	2 cut(s)	254, 302
BciT130I	CCWGG	5 cut(s)	69, 218, 264, 294, 317
BcoDI	GTCTC	2 cut(s)	165, 351
BisI	GCNGC	3 cut(s)	42, 60, 231
BlsI	GCNGC	3 cut(s)	43, 61, 232
BmcAI	AGTACT	1 cut(s)	25
Bme1390I	CCNGG	5 cut(s)	69, 218, 264, 294, 317
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmrFI	CCNGG	5 cut(s)	69, 218, 264, 294, 317
BpiI	GAAGAC	2 cut(s)	68, 378
BpuEI	CTTGAG	2 cut(s)	52, 344
BsaHI	GRCGYC	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 374
Bse1I	ACTGG	2 cut(s)	19, 31
BseBI	CCWGG	5 cut(s)	69, 218, 264, 294, 317
BseLI	CCNNNNNNNGG	2 cut(s)	322, 374
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	19, 31
BseXI	GCAGC	3 cut(s)	28, 71, 242
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	322, 374
BsmAI	GTCTC	2 cut(s)	165, 351
BsnI	GGCC	1 cut(s)	304
Bso31I	GGTCTC	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	85
BspHI	TCATGA	2 cut(s)	156, 163
BspPI	GGATC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	165
BsrGI	TGTACA	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	19, 31
BssMI	GATC	1 cut(s)	266
BssNI	GRCGYC	1 cut(s)	73
Bst2UI	CCWGG	5 cut(s)	69, 218, 264, 294, 317
Bst4CI	ACNGT	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	2 cut(s)	165, 351
BstMBI	GATC	1 cut(s)	266
BstNI	CCWGG	5 cut(s)	69, 218, 264, 294, 317
BstSCI	CCNGG	5 cut(s)	67, 216, 262, 292, 315
BstV1I	GCAGC	3 cut(s)	28, 71, 242
BstV2I	GAAGAC	2 cut(s)	68, 378
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	12
CaiI	CAGNNNCTG	2 cut(s)	68, 269
CciI	TCATGA	2 cut(s)	156, 163
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	4 cut(s)	4, 24, 105, 202
CviAII	CATG	2 cut(s)	157, 164
CviJI	RGCY	5 cut(s)	30, 233, 283, 297, 304
CviKI_1	RGCY	5 cut(s)	30, 233, 283, 297, 304
CviQI	GTAC	4 cut(s)	4, 24, 105, 202
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	236
EcoRII	CCWGG	5 cut(s)	67, 216, 262, 292, 315
FaeI	CATG	2 cut(s)	160, 167
FaiI	YATR	5 cut(s)	144, 158, 165, 226, 332
FatI	CATG	2 cut(s)	156, 163
Fnu4HI	GCNGC	3 cut(s)	42, 60, 231
Fsp4HI	GCNGC	3 cut(s)	42, 60, 231
GluI	GCNGC	3 cut(s)	42, 60, 231
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	160, 167
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	4 cut(s)	97, 153, 160, 312
HpaII	CCGG	1 cut(s)	175
Hpy166II	GTNNAC	2 cut(s)	10, 188
Hpy188I	TCNGA	2 cut(s)	81, 125
Hpy188III	TCNNGA	2 cut(s)	157, 164
Hpy8I	GTNNAC	2 cut(s)	10, 188
HpyAV	CCTTC	3 cut(s)	125, 130, 143
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	6, 73
HpyCH4V	TGCA	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	2 cut(s)	6, 73
Hsp92I	GRCGYC	1 cut(s)	73
Hsp92II	CATG	2 cut(s)	160, 167
Kzo9I	GATC	1 cut(s)	266
Lsp1109I	GCAGC	3 cut(s)	28, 71, 242
MaeII	ACGT	2 cut(s)	6, 73
MaeIII	GTNAC	2 cut(s)	377, 409
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	3 cut(s)	68, 251, 378
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	1 cut(s)	353
MlyI	GAGTC	2 cut(s)	154, 162
MnlI	CCTC	2 cut(s)	75, 368
MseI	TTAA	3 cut(s)	111, 255, 372
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	5 cut(s)	69, 218, 264, 294, 317
MvaI	CCWGG	5 cut(s)	69, 218, 264, 294, 317
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	160, 167
NmeAIII	GCCGAG	2 cut(s)	259, 328
OliI	CACNNNNGTG	1 cut(s)	17
PagI	TCATGA	2 cut(s)	156, 163
PfeI	GAWTC	2 cut(s)	97, 312
PfoI	TCCNGGA	4 cut(s)	67, 216, 262, 315
PkrI	GCNGC	3 cut(s)	43, 61, 232
PleI	GAGTC	2 cut(s)	154, 161
PpsI	GAGTC	2 cut(s)	154, 161
Psp6I	CCWGG	5 cut(s)	67, 216, 262, 292, 315
PspGI	CCWGG	5 cut(s)	67, 216, 262, 292, 315
PspPI	GGNCC	1 cut(s)	236
PstNI	CAGNNNCTG	2 cut(s)	68, 269
PsuI	RGATCY	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	4 cut(s)	5, 25, 106, 203
RsaNI	GTAC	4 cut(s)	4, 24, 105, 202
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	111, 255, 372
SatI	GCNGC	3 cut(s)	42, 60, 231
Sau3AI	GATC	1 cut(s)	266
Sau96I	GGNCC	1 cut(s)	236
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	2 cut(s)	154, 162
ScrFI	CCNGG	5 cut(s)	69, 218, 264, 294, 317
SetI	ASST	4 cut(s)	9, 76, 141, 235
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	31, 359
SmoI	CTYRAG	2 cut(s)	31, 359
Sse9I	AATT	1 cut(s)	353
StyD4I	CCNGG	5 cut(s)	67, 216, 262, 292, 315
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	2 cut(s)	9, 76
TaqI	TCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	353
TatI	WGTACW	2 cut(s)	23, 104
TfiI	GAWTC	2 cut(s)	97, 312
Tru1I	TTAA	3 cut(s)	111, 255, 372
Tru9I	TTAA	3 cut(s)	111, 255, 372
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	3 cut(s)	41, 59, 230
TspDTI	ATGAA	3 cut(s)	131, 224, 347
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	236
ZraI	GACGTC	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.