Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007456

Physical Location & Seq

Genomic Coordinates Forward (+)

17481447 .. 17484819

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGACAACCGAAATGCTGCTTACCATCCATGTCTGAAGCCAGCGGTTGTTGTAACTGGAACAGCAAATGAAGGTACTGCTGGACCAGCTATTGGTCATGTTGACATTGGCGTGAGTGATGCAGCTTACTTATTTCGAGTTGCAGTTCCTGGTCTTCGGAGGAAACAAAGTACAGTGAAATGCATCATCGAAAGTGACGGGAAGGTCCATATCGAAGGAGTTATGACAGAGACCGGACTTGTTTTAAACTCATCAACTGTGTACCAGATGAAAGTCCAGCAACTATGCGGAGCGGGATCATTTACCATCTCTTTTAATCTTCCTGGAACTGTTGATGCTCGGCTGTTTTCTCCTGTTTTTCGGCCAGATGGAATCCTTGAAGTGGTGGTTATGAAATCGAAAATGTCTCAGGAAGTCCTCAAGTTCCCTTCTCATGGCAGAAAGTCTTCCCCTGTTGAGTTTCCTCAAGTAACCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

160

Amino Acids

17.03

Weight (kDa)

8.84

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76440 AT1G76440 AT1G76440
fragaria_vesca	FvH4_5g25970 FvH4_5g25970
malus_domestica	MD09G1270300.v1.1 MD17G1268400.v1.1
prunus_persica	Prupe.5G006000_v2.0.a1
pyrus_communis	pycom09g18150
rosa_chinensis	RchiOBHm_Chr4g0409731
rosa_laevigata	RLG00000008528
rosa_multiflora	Rmu_sc0008746.1_g000001 Rmu_sc0013436.1_g000001 Rmu_sc0015305.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354290
rosa_rugosa	Rorug04G0096500 Rorug07G0160800
rosa_samantha	Rh4AG157700 Rh4BG157500 Rh4CG168300 Rh4DG152100 Rh7BG292000 Rh7DG301300
rosa_wichuraiana	Rw4G012900 Rw4G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	293
AciI	CCGC	3 cut(s)	44, 288, 293
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	3 cut(s)	76, 172, 263
AfiI	CCNNNNNNNGG	3 cut(s)	92, 382, 434
AgsI	TTSAA	1 cut(s)	380
AjnI	CCWGG	2 cut(s)	148, 322
AluBI	AGCT	2 cut(s)	89, 125
AluI	AGCT	2 cut(s)	89, 125
Alw26I	GTCTC	2 cut(s)	224, 411
AlwI	GGATC	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	17, 122
Asp700I	GAANNNNTTC	1 cut(s)	445
AspS9I	GGNCC	2 cut(s)	83, 205
AvaII	GGWCC	2 cut(s)	83, 205
BbsI	GAAGAC	2 cut(s)	146, 438
BbvI	GCAGC	2 cut(s)	4, 134
BccI	CCATC	3 cut(s)	33, 314, 362
BciT130I	CCWGG	2 cut(s)	150, 324
BcoDI	GTCTC	2 cut(s)	224, 411
BisI	GCNGC	2 cut(s)	18, 123
BlsI	GCNGC	2 cut(s)	19, 124
Bme1390I	CCNGG	2 cut(s)	150, 324
Bme18I	GGWCC	2 cut(s)	83, 205
BmgT120I	GGNCC	2 cut(s)	83, 205
BmrFI	CCNGG	2 cut(s)	150, 324
BmsI	GCATC	3 cut(s)	109, 192, 325
BpiI	GAAGAC	2 cut(s)	146, 438
BpuEI	CTTGAG	2 cut(s)	404, 450
BsaI	GGTCTC	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 382, 434
Bse1I	ACTGG	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	150, 324
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	3 cut(s)	92, 382, 434
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	4, 134
BshFI	GGCC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	3 cut(s)	92, 382, 434
BsmAI	GTCTC	2 cut(s)	224, 411
BsnI	GGCC	1 cut(s)	364
Bso31I	GGTCTC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	296
BspACI	CCGC	3 cut(s)	44, 288, 293
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	1 cut(s)	421
BspPI	GGATC	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	296
Bst2UI	CCWGG	2 cut(s)	150, 324
Bst4CI	ACNGT	4 cut(s)	175, 259, 331, 475
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	1 cut(s)	299
BstMAI	GTCTC	2 cut(s)	224, 411
BstMBI	GATC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	2 cut(s)	150, 324
BstSCI	CCNGG	2 cut(s)	148, 322
BstV1I	GCAGC	2 cut(s)	4, 134
BstV2I	GAAGAC	2 cut(s)	146, 438
BsuRI	GGCC	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	83, 205
Csp6I	GTAC	3 cut(s)	75, 171, 262
CviAII	CATG	3 cut(s)	30, 98, 434
CviJI	RGCY	5 cut(s)	40, 89, 125, 343, 364
CviKI_1	RGCY	5 cut(s)	40, 89, 125, 343, 364
CviQI	GTAC	3 cut(s)	75, 171, 262
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
DraI	TTTAAA	1 cut(s)	246
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	362
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	83, 205
Eco57I	CTGAAG	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	148, 322
EcoT22I	ATGCAT	1 cut(s)	185
FaeI	CATG	3 cut(s)	33, 101, 437
FaiI	YATR	7 cut(s)	31, 99, 210, 224, 286, 392, 435
FatI	CATG	3 cut(s)	29, 97, 433
FauI	CCCGC	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	18, 123
FokI	GGATG	1 cut(s)	12
Fsp4HI	GCNGC	2 cut(s)	18, 123
GluI	GCNGC	2 cut(s)	18, 123
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	3 cut(s)	33, 101, 437
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	372
HpaII	CCGG	1 cut(s)	234
Hpy166II	GTNNAC	2 cut(s)	103, 262
Hpy188I	TCNGA	3 cut(s)	36, 159, 479
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	2 cut(s)	103, 262
HpyAV	CCTTC	4 cut(s)	65, 196, 209, 438
HpyCH4III	ACNGT	4 cut(s)	175, 259, 331, 475
HpyCH4V	TGCA	3 cut(s)	122, 143, 183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	3 cut(s)	33, 101, 437
Kzo9I	GATC	1 cut(s)	296
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	2 cut(s)	4, 134
LweI	GCATC	3 cut(s)	109, 192, 325
MaeIII	GTNAC	3 cut(s)	52, 194, 469
MalI	GATC	1 cut(s)	298
MbiI	CCGCTC	1 cut(s)	293
MboI	GATC	1 cut(s)	296
MboII	GAAGA	3 cut(s)	146, 311, 438
MnlI	CCTC	3 cut(s)	153, 428, 474
Mph1103I	ATGCAT	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	445
MseI	TTAA	2 cut(s)	245, 315
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	2 cut(s)	150, 324
MvaI	CCWGG	2 cut(s)	150, 324
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	3 cut(s)	33, 101, 437
NmeAIII	GCCGAG	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	372
PflMI	CCANNNNNTGG	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	19, 124
Psp6I	CCWGG	2 cut(s)	148, 322
PspGI	CCWGG	2 cut(s)	148, 322
PspPI	GGNCC	2 cut(s)	83, 205
PstNI	CAGNNNCTG	1 cut(s)	149
RsaI	GTAC	3 cut(s)	76, 172, 263
RsaNI	GTAC	3 cut(s)	75, 171, 262
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	245, 315
SatI	GCNGC	2 cut(s)	18, 123
Sau3AI	GATC	1 cut(s)	296
Sau96I	GGNCC	2 cut(s)	83, 205
ScrFI	CCNGG	2 cut(s)	150, 324
SetI	ASST	4 cut(s)	76, 91, 127, 207
SfaNI	GCATC	3 cut(s)	109, 192, 325
SinI	GGWCC	2 cut(s)	83, 205
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	419, 465
SmoI	CTYRAG	2 cut(s)	419, 465
SsiI	CCGC	3 cut(s)	44, 288, 293
StyD4I	CCNGG	2 cut(s)	148, 322
TaaI	ACNGT	4 cut(s)	175, 259, 331, 475
TaqI	TCGA	4 cut(s)	136, 189, 213, 398
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	2 cut(s)	245, 315
Tru9I	TTAA	2 cut(s)	245, 315
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	17, 122
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	84, 284, 407
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	92
VpaK11BI	GGWCC	2 cut(s)	83, 205
XmnI	GAANNNNTTC	1 cut(s)	445
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.