Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007456

Physical Location & Seq

Genomic Coordinates Forward (+)

36913403 .. 36914030

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG168300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGACAGCCAAAATGTTGGTTACCATCCATGTCTGAAGCCAGCTGTTGTTATAACTGGAACAGCAAATGAAGGTACTGCTGGACCAGCTATTGGTCATGTTGACATTGGCGTGAGTGATGCTGCCTACTTATTTCGAGTTGCACTTCCAGGTCTTCGGAGGAAACAAAGTACAGTGAAATGTATGATTGAAAGTGACGGGAAGGTTCATATTGAAGGAGTCATGACAGAGACTGGACTTGTCATAAACTCATCAACTGTGTACCAGATGAAGGTCCAGCAACTATGTGCAGCTGGACCATTTACCATCTCTTTTAATCTTCCTGGATCTGTTGATACTCGACTGTTTTCTCCTGTCTTTCGGCCGGATGGAATCCTGGAAGTGGTGGTTTTGAAATCCAAAATGTCTTCAGAATTCCTCTATCCATTTGATGGCAACAAGTCTTCCCCTGTCAAGTTTCCCCAAGTAACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

158

Amino Acids

16.95

Weight (kDa)

7.72

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76440 AT1G76440 AT1G76440
fragaria_vesca	FvH4_5g25970 FvH4_5g25970
malus_domestica	MD09G1270300.v1.1 MD17G1268400.v1.1
prunus_persica	Prupe.5G006000_v2.0.a1
pyrus_communis	pycom09g18150
rosa_chinensis	RchiOBHm_Chr4g0409731
rosa_laevigata	RLG00000008528
rosa_multiflora	Rmu_sc0008746.1_g000001 Rmu_sc0013436.1_g000001 Rmu_sc0015305.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354290
rosa_rugosa	Rorug04G0096500 Rorug07G0160800
rosa_samantha	Rh4AG157700 Rh4BG157500 Rh4CG168300 Rh4DG152100 Rh7BG292000 Rh7DG301300
rosa_wichuraiana	Rw4G012900 Rw4G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AccB7I	CCANNNNNTGG	2 cut(s)	92, 431
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	413
AcuI	CTGAAG	2 cut(s)	56, 393
AfaI	GTAC	3 cut(s)	76, 172, 263
AfiI	CCNNNNNNNGG	4 cut(s)	92, 271, 382, 431
AgsI	TTSAA	3 cut(s)	191, 215, 394
AjnI	CCWGG	3 cut(s)	148, 322, 375
AluBI	AGCT	3 cut(s)	44, 89, 293
AluI	AGCT	3 cut(s)	44, 89, 293
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	334
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	122, 290
ApoI	RAATTY	1 cut(s)	413
AspS9I	GGNCC	3 cut(s)	83, 274, 296
AvaII	GGWCC	3 cut(s)	83, 274, 296
BbsI	GAAGAC	3 cut(s)	146, 399, 435
BbvI	GCAGC	2 cut(s)	109, 302
BccI	CCATC	4 cut(s)	33, 314, 362, 425
BciT130I	CCWGG	3 cut(s)	150, 324, 377
BcoDI	GTCTC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	123, 291
BlsI	GCNGC	2 cut(s)	124, 292
Bme1390I	CCNGG	3 cut(s)	150, 324, 377
Bme18I	GGWCC	3 cut(s)	83, 274, 296
BmgT120I	GGNCC	3 cut(s)	83, 274, 296
BmrFI	CCNGG	3 cut(s)	150, 324, 377
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	3 cut(s)	146, 399, 435
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 271, 382, 431
Bse1I	ACTGG	2 cut(s)	61, 238
BseBI	CCWGG	3 cut(s)	150, 324, 377
BseGI	GGATG	2 cut(s)	25, 373
BseLI	CCNNNNNNNGG	4 cut(s)	92, 271, 382, 431
BseNI	ACTGG	2 cut(s)	61, 238
BseX3I	CGGCCG	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	109, 302
BsgI	GTGCAG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	364
BsiEI	CGRYCG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	4 cut(s)	92, 271, 382, 431
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	364
Bsp143I	GATC	1 cut(s)	326
BspANI	GGCC	1 cut(s)	364
BspHI	TCATGA	1 cut(s)	222
BspPI	GGATC	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	61, 238
BssMI	GATC	1 cut(s)	326
Bst2UI	CCWGG	3 cut(s)	150, 324, 377
Bst4CI	ACNGT	4 cut(s)	175, 259, 345, 472
BstC8I	GCNNGC	1 cut(s)	42
BstEII	GGTNACC	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	25, 373
BstKTI	GATC	1 cut(s)	329
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	326
BstMCI	CGRYCG	1 cut(s)	365
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	3 cut(s)	150, 324, 377
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	3 cut(s)	148, 322, 375
BstV1I	GCAGC	2 cut(s)	109, 302
BstV2I	GAAGAC	3 cut(s)	146, 399, 435
BstX2I	RGATCY	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	326
BstZI	CGGCCG	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	25, 373
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	3 cut(s)	83, 274, 296
Csp6I	GTAC	3 cut(s)	75, 171, 262
CviAII	CATG	3 cut(s)	30, 98, 223
CviJI	RGCY	6 cut(s)	9, 40, 44, 89, 293, 364
CviKI_1	RGCY	6 cut(s)	9, 40, 44, 89, 293, 364
CviQI	GTAC	3 cut(s)	75, 171, 262
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	362
EagI	CGGCCG	1 cut(s)	362
EclXI	CGGCCG	1 cut(s)	362
Eco47I	GGWCC	3 cut(s)	83, 274, 296
Eco52I	CGGCCG	1 cut(s)	362
Eco57I	CTGAAG	2 cut(s)	56, 393
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	3 cut(s)	148, 322, 375
FaeI	CATG	3 cut(s)	33, 101, 226
FaiI	YATR	8 cut(s)	31, 53, 99, 185, 210, 224, 245, 286
FatI	CATG	3 cut(s)	29, 97, 222
Fnu4HI	GCNGC	2 cut(s)	123, 291
FokI	GGATG	2 cut(s)	12, 380
Fsp4HI	GCNGC	2 cut(s)	123, 291
GluI	GCNGC	2 cut(s)	123, 291
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	3 cut(s)	33, 101, 226
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	2 cut(s)	219, 372
HpaII	CCGG	1 cut(s)	365
Hpy166II	GTNNAC	2 cut(s)	103, 262
Hpy188I	TCNGA	4 cut(s)	36, 159, 412, 476
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	103, 262
HpyAV	CCTTC	4 cut(s)	65, 196, 209, 265
HpyCH4III	ACNGT	4 cut(s)	175, 259, 345, 472
HpyCH4V	TGCA	2 cut(s)	143, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
Hsp92II	CATG	3 cut(s)	33, 101, 226
Kzo9I	GATC	1 cut(s)	326
Lsp1109I	GCAGC	2 cut(s)	109, 302
LweI	GCATC	1 cut(s)	109
MaeIII	GTNAC	3 cut(s)	20, 194, 466
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	4 cut(s)	146, 311, 399, 435
MflI	RGATCY	1 cut(s)	326
MluCI	AATT	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	2 cut(s)	153, 428
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	2 cut(s)	44, 293
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	3 cut(s)	150, 324, 377
MvaI	CCWGG	3 cut(s)	150, 324, 377
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	3 cut(s)	33, 101, 226
NmuCI	GTSAC	1 cut(s)	194
PagI	TCATGA	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	372
PflMI	CCANNNNNTGG	2 cut(s)	92, 431
PfoI	TCCNGGA	2 cut(s)	322, 375
PkrI	GCNGC	2 cut(s)	124, 292
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	53
Psp6I	CCWGG	3 cut(s)	148, 322, 375
PspEI	GGTNACC	1 cut(s)	20
PspGI	CCWGG	3 cut(s)	148, 322, 375
PspPI	GGNCC	3 cut(s)	83, 274, 296
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	326
PvuII	CAGCTG	2 cut(s)	44, 293
RsaI	GTAC	3 cut(s)	76, 172, 263
RsaNI	GTAC	3 cut(s)	75, 171, 262
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	2 cut(s)	123, 291
Sau3AI	GATC	1 cut(s)	326
Sau96I	GGNCC	3 cut(s)	83, 274, 296
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	3 cut(s)	150, 324, 377
SetI	ASST	7 cut(s)	46, 76, 91, 154, 207, 276, 295
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	3 cut(s)	83, 274, 296
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	413
StyD4I	CCNGG	3 cut(s)	148, 322, 375
TaaI	ACNGT	4 cut(s)	175, 259, 345, 472
TaqI	TCGA	2 cut(s)	136, 340
TasI	AATT	1 cut(s)	413
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	122, 290
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	84, 197, 284
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	2 cut(s)	92, 431
VpaK11BI	GGWCC	3 cut(s)	83, 274, 296
XapI	RAATTY	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.