Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004485

Physical Location & Seq

Genomic Coordinates Forward (+)

28728998 .. 28730851

Gene Structure 1854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCACTGTTTCAGGAGAAGCTTTCATCACTTTCCTCAAGTTATTCGTCAATTCATTCTCTTCCGAGGATTCTCGTGTCCAAGCCTCGTAATAGAATTGCCGTGACAAAGTCCCGTTCGATTTGCAGAGCTTCGTGGCAAGAGCTCGCCGGAGTGTTGGTTTTCTCGGCGATTCCATTCACTGCGGTTAAAGCAATTGCAAATAGCTCAATAGGAGTTTCTCTACGGCGGAGATTAGAAGAGAAAAAGAAGGAAGCCGTAGAGAATTCTTCAAGATTCAAGTCTAAAGCTCAGGAAGCTAGAAACGACAGCAAGTGGTATGGAAAAGAACGTCCCCGTTGGTTTGGTCCAATCCCATATGATTATCCTCCATACCTTACAGGAGAACTTCCAGGGGATTATGGTTTCGACATTGCAGGACTTGGCAAAGATCGTTTGACCTTTGATAAGTATTTCAACTTTGAAATACTTCATGCTCGTTGGGCCATGCTTGCAGCATTGGGTGCTCTAATCCCGGAAGTATTTGATCTCACTGGAACTTTCCATTTTGCTGAACCCGTATGGTGGCGAGTCGGTTACTCCAAGCTTCAGGGAGAGACATTGGAGTACCTCGGCATCCCAGGGCTTCATGTAGCTGGAAGCCAAGGTGTCATTGTAATTGCCATTTGCCAAGTACTCTTGATGGTAGGACCGGAATACGCAAGATACTGTGGCATTGAGGCCTTAGAGCCACTGGGAATATACTTGCCAGGAGACATTAACTATCCTGGAGGGACGCTTTTTGATCCCTTGAATCTTTCCGAGGATCCTGTAGCTTTTGAAGATCTTAAGGTTAAAGAGATTAAAAATGGACGATTGGCGATGGTCGCGTGGCTTGGATTTTATGCACAGGCTGCTTTCACTGGAAAAGGTCCTGTACAAAATCTTGTTGACCATGTCTCGGATCCATTACATAACAATCTGATTGCCATGCTTCAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

327

Amino Acids

36.37

Weight (kDa)

8.28

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	123 - 298	1.3e-41	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76570
fragaria_vesca	FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480
malus_domestica	MD06G1001700.v1.1
prunus_persica	Prupe.5G002700_v2.0.a1 Prupe.5G002700_v2.0.a1
pyrus_communis	pycom06g00180
rosa_chinensis	RchiOBHm_Chr7g0217391
rosa_laevigata	RLG00000002481
rosa_multiflora	Rmu_co8208352.1_g000001 Rmu_sc0000145.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242130 Rroxscaffold_3G00242220
rosa_rugosa	Rorug07G0168700 Rorug07G0168800
rosa_samantha	Rh7AG308400 Rh7BG299100 Rh7CG327700 Rh7DG307700
rosa_wichuraiana	Rw7G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	869
AciI	CCGC	2 cut(s)	185, 229
AclWI	GGATC	5 cut(s)	779, 800, 813, 938, 951
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	2 cut(s)	572, 959
AfaI	GTAC	3 cut(s)	608, 675, 918
AfiI	CCNNNNNNNGG	2 cut(s)	564, 940
AflII	CTTAAG	1 cut(s)	827
AgsI	TTSAA	6 cut(s)	273, 280, 457, 464, 793, 821
AjnI	CCWGG	4 cut(s)	391, 619, 748, 766
AluBI	AGCT	9 cut(s)	22, 131, 145, 207, 290, 299, 586, 635, 815
AluI	AGCT	9 cut(s)	22, 131, 145, 207, 290, 299, 586, 635, 815
Alw21I	GWGCWC	2 cut(s)	147, 508
Alw26I	GTCTC	3 cut(s)	590, 747, 943
AlwI	GGATC	5 cut(s)	779, 800, 813, 938, 951
AoxI	GGCC	2 cut(s)	483, 720
ApeKI	GCWGC	2 cut(s)	494, 893
ApoI	RAATTY	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	468
AspS9I	GGNCC	4 cut(s)	347, 483, 689, 911
AsuC2I	CCSGG	1 cut(s)	515
AvaII	GGWCC	3 cut(s)	347, 689, 911
BamHI	GGATCC	2 cut(s)	805, 943
BanII	GRGCYC	1 cut(s)	147
BauI	CACGAG	1 cut(s)	74
Bbv12I	GWGCWC	2 cut(s)	147, 508
BbvI	GCAGC	2 cut(s)	506, 880
BccI	CCATC	2 cut(s)	676, 856
BceAI	ACGGC	3 cut(s)	86, 242, 242
BciT130I	CCWGG	4 cut(s)	393, 621, 750, 768
BcnI	CCSGG	1 cut(s)	515
BcoDI	GTCTC	3 cut(s)	590, 747, 943
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	810
BfrI	CTTAAG	1 cut(s)	827
BglII	AGATCT	1 cut(s)	823
BisI	GCNGC	2 cut(s)	495, 894
BlsI	GCNGC	2 cut(s)	496, 895
BmcAI	AGTACT	1 cut(s)	675
Bme1390I	CCNGG	5 cut(s)	393, 515, 621, 750, 768
Bme18I	GGWCC	3 cut(s)	347, 689, 911
BmgT120I	GGNCC	4 cut(s)	347, 483, 689, 911
BmiI	GGNNCC	2 cut(s)	807, 945
BmrFI	CCNGG	5 cut(s)	393, 515, 621, 750, 768
BmrI	ACTGGG	1 cut(s)	743
BmsI	GCATC	1 cut(s)	624
BmuI	ACTGGG	1 cut(s)	743
BpmI	CTGGAG	1 cut(s)	789
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	515
BsaJI	CCNNGG	7 cut(s)	65, 392, 610, 619, 620, 643, 801
BsaWI	WCCGGW	1 cut(s)	691
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	564, 940
Bse1I	ACTGG	3 cut(s)	538, 738, 907
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	4 cut(s)	393, 621, 750, 768
BseDI	CCNNGG	7 cut(s)	65, 392, 610, 619, 620, 643, 801
BseGI	GGATG	1 cut(s)	615
BseLI	CCNNNNNNNGG	2 cut(s)	564, 940
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	3 cut(s)	538, 738, 907
BseXI	GCAGC	2 cut(s)	506, 880
Bsh1236I	CGCG	1 cut(s)	869
BshFI	GGCC	2 cut(s)	485, 722
BsiHKAI	GWGCWC	2 cut(s)	147, 508
BsiSI	CCGG	3 cut(s)	150, 515, 692
BslFI	GGGAC	3 cut(s)	97, 318, 787
BslI	CCNNNNNNNGG	2 cut(s)	564, 940
BsmAI	GTCTC	3 cut(s)	590, 747, 943
BsmFI	GGGAC	3 cut(s)	97, 318, 787
BsnI	GGCC	2 cut(s)	485, 722
Bsp1286I	GDGCHC	2 cut(s)	147, 508
Bsp1407I	TGTACA	1 cut(s)	916
Bsp143I	GATC	6 cut(s)	430, 526, 784, 805, 823, 943
BspACI	CCGC	2 cut(s)	185, 229
BspANI	GGCC	2 cut(s)	485, 722
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	869
BspLI	GGNNCC	2 cut(s)	807, 945
BspPI	GGATC	5 cut(s)	779, 800, 813, 938, 951
BspTI	CTTAAG	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	411
BsrGI	TGTACA	1 cut(s)	916
BsrI	ACTGG	3 cut(s)	538, 738, 907
BssECI	CCNNGG	7 cut(s)	65, 392, 610, 619, 620, 643, 801
BssMI	GATC	6 cut(s)	430, 526, 784, 805, 823, 943
BssSI	CACGAG	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	643
Bst2BI	CACGAG	1 cut(s)	74
Bst2UI	CCWGG	4 cut(s)	393, 621, 750, 768
Bst4CI	ACNGT	2 cut(s)	9, 710
Bst6I	CTCTTC	2 cut(s)	66, 234
BstAFI	CTTAAG	1 cut(s)	827
BstAPI	GCANNNNNTGC	2 cut(s)	503, 893
BstAUI	TGTACA	1 cut(s)	916
BstC8I	GCNNGC	2 cut(s)	147, 492
BstDEI	CTNAG	2 cut(s)	291, 724
BstF5I	GGATG	1 cut(s)	615
BstFNI	CGCG	1 cut(s)	869
BstKTI	GATC	6 cut(s)	433, 529, 787, 808, 826, 946
BstMAI	GTCTC	3 cut(s)	590, 747, 943
BstMBI	GATC	6 cut(s)	430, 526, 784, 805, 823, 943
BstMWI	GCNNNNNNNGC	7 cut(s)	191, 296, 482, 491, 503, 866, 893
BstNI	CCWGG	4 cut(s)	393, 621, 750, 768
BstSCI	CCNGG	5 cut(s)	391, 513, 619, 748, 766
BstSFI	CTRYAG	1 cut(s)	810
BstUI	CGCG	1 cut(s)	869
BstV1I	GCAGC	2 cut(s)	506, 880
BstX2I	RGATCY	3 cut(s)	805, 823, 943
BstYI	RGATCY	3 cut(s)	805, 823, 943
BsuRI	GGCC	2 cut(s)	485, 722
BtgZI	GCGATG	1 cut(s)	875
BtsCI	GGATG	1 cut(s)	615
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	5 cut(s)	5, 180, 531, 731, 900
Cac8I	GCNNGC	2 cut(s)	147, 492
Cfr13I	GGNCC	4 cut(s)	347, 483, 689, 911
CseI	GACGC	1 cut(s)	784
Csp6I	GTAC	3 cut(s)	607, 674, 917
CviAII	CATG	6 cut(s)	473, 487, 629, 935, 970, 981
CviQI	GTAC	3 cut(s)	607, 674, 917
DdeI	CTNAG	2 cut(s)	291, 724
DpnI	GATC	6 cut(s)	432, 528, 786, 807, 825, 945
DpnII	GATC	6 cut(s)	430, 526, 784, 805, 823, 943
Eam1104I	CTCTTC	2 cut(s)	66, 234
EarI	CTCTTC	2 cut(s)	66, 234
EciI	GGCGGA	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	643
Eco147I	AGGCCT	1 cut(s)	722
Eco24I	GRGCYC	1 cut(s)	147
Eco47I	GGWCC	3 cut(s)	347, 689, 911
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	2 cut(s)	572, 959
EcoICRI	GAGCTC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	911
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	4 cut(s)	391, 619, 748, 766
EcoT14I	CCWWGG	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	6 cut(s)	476, 490, 632, 938, 973, 984
FaqI	GGGAC	3 cut(s)	97, 318, 787
FatI	CATG	6 cut(s)	472, 486, 628, 934, 969, 980
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	495, 894
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	495, 894
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	2 cut(s)	495, 894
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	485, 722
HapII	CCGG	3 cut(s)	150, 515, 692
HgaI	GACGC	1 cut(s)	784
Hin1II	CATG	6 cut(s)	476, 490, 632, 938, 973, 984
HincII	GTYRAC	1 cut(s)	931
HindII	GTYRAC	1 cut(s)	931
HindIII	AAGCTT	2 cut(s)	20, 584
HinfI	GANTC	5 cut(s)	70, 172, 276, 570, 793
HpaII	CCGG	3 cut(s)	150, 515, 692
Hpy166II	GTNNAC	1 cut(s)	931
Hpy188I	TCNGA	5 cut(s)	66, 802, 943, 963, 978
Hpy188III	TCNNGA	4 cut(s)	14, 273, 293, 679
Hpy8I	GTNNAC	1 cut(s)	931
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	2 cut(s)	9, 710
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	5 cut(s)	126, 200, 416, 494, 887
HpyF10VI	GCNNNNNNNGC	7 cut(s)	191, 296, 482, 491, 503, 866, 893
HpyF3I	CTNAG	2 cut(s)	291, 724
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	6 cut(s)	476, 490, 632, 938, 973, 984
Kzo9I	GATC	6 cut(s)	430, 526, 784, 805, 823, 943
Lsp1109I	GCAGC	2 cut(s)	506, 880
LweI	GCATC	1 cut(s)	624
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	103, 575
MalI	GATC	6 cut(s)	432, 528, 786, 807, 825, 945
MboI	GATC	6 cut(s)	430, 526, 784, 805, 823, 943
MboII	GAAGA	4 cut(s)	53, 251, 261, 833
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	3 cut(s)	805, 823, 943
MhlI	GDGCHC	2 cut(s)	147, 508
MluCI	AATT	5 cut(s)	51, 96, 195, 265, 657
MlyI	GAGTC	1 cut(s)	579
MnlI	CCTC	8 cut(s)	46, 60, 96, 378, 620, 712, 764, 796
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	5 cut(s)	189, 759, 828, 834, 843
MspCI	CTTAAG	1 cut(s)	827
MspI	CCGG	3 cut(s)	150, 515, 692
MspR9I	CCNGG	5 cut(s)	393, 515, 621, 750, 768
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	4 cut(s)	393, 621, 750, 768
MvnI	CGCG	1 cut(s)	869
MwoI	GCNNNNNNNGC	7 cut(s)	191, 296, 482, 491, 503, 866, 893
NciI	CCSGG	1 cut(s)	515
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	6 cut(s)	430, 526, 784, 805, 823, 943
NlaIII	CATG	6 cut(s)	476, 490, 632, 938, 973, 984
NlaIV	GGNNCC	2 cut(s)	807, 945
NmeAIII	GCCGAG	2 cut(s)	146, 591
NmuCI	GTSAC	1 cut(s)	103
PasI	CCCWGGG	1 cut(s)	620
PceI	AGGCCT	1 cut(s)	722
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	4 cut(s)	70, 172, 276, 793
PflFI	GACNNNGTC	2 cut(s)	109, 935
PfoI	TCCNGGA	2 cut(s)	513, 766
PkrI	GCNGC	2 cut(s)	496, 895
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PpuMI	RGGWCCY	1 cut(s)	911
Psp124BI	GAGCTC	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	911
Psp6I	CCWGG	4 cut(s)	391, 619, 748, 766
PspGI	CCWGG	4 cut(s)	391, 619, 748, 766
PspN4I	GGNNCC	2 cut(s)	807, 945
PspPI	GGNCC	4 cut(s)	347, 483, 689, 911
PspPPI	RGGWCCY	1 cut(s)	911
PsuI	RGATCY	3 cut(s)	805, 823, 943
PsyI	GACNNNGTC	2 cut(s)	109, 935
RsaI	GTAC	3 cut(s)	608, 675, 918
RsaNI	GTAC	3 cut(s)	607, 674, 917
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	5 cut(s)	189, 759, 828, 834, 843
SatI	GCNGC	2 cut(s)	495, 894
Sau3AI	GATC	6 cut(s)	430, 526, 784, 805, 823, 943
Sau96I	GGNCC	4 cut(s)	347, 483, 689, 911
ScaI	AGTACT	1 cut(s)	675
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	5 cut(s)	393, 515, 621, 750, 768
SduI	GDGCHC	2 cut(s)	147, 508
SfaNI	GCATC	1 cut(s)	624
SfcI	CTRYAG	1 cut(s)	810
SinI	GGWCC	3 cut(s)	347, 689, 911
SmlI	CTYRAG	2 cut(s)	37, 827
SmoI	CTYRAG	2 cut(s)	37, 827
Sse9I	AATT	5 cut(s)	51, 96, 195, 265, 657
SseBI	AGGCCT	1 cut(s)	722
SsiI	CCGC	2 cut(s)	185, 229
SspMI	CTAG	1 cut(s)	300
SstI	GAGCTC	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	722
StyD4I	CCNGG	5 cut(s)	391, 513, 619, 748, 766
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	2 cut(s)	9, 710
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	119, 408
TasI	AATT	5 cut(s)	51, 96, 195, 265, 657
TatI	WGTACW	2 cut(s)	673, 916
TfiI	GAWTC	4 cut(s)	70, 172, 276, 793
Tru1I	TTAA	5 cut(s)	189, 759, 828, 834, 843
Tru9I	TTAA	5 cut(s)	189, 759, 828, 834, 843
TscAI	CASTG	5 cut(s)	12, 187, 538, 738, 907
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	494, 893
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	4 cut(s)	15, 44, 461, 617
TspRI	CASTG	5 cut(s)	12, 187, 538, 738, 907
Tth111I	GACNNNGTC	2 cut(s)	109, 935
Vha464I	CTTAAG	1 cut(s)	827
VpaK11BI	GGWCC	3 cut(s)	347, 689, 911
XapI	RAATTY	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	1 cut(s)	300
ZrmI	AGTACT	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.