Rorug07G0168800

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004485
Physical Location & Seq
Forward (+)
13640698 .. 13641590
893 bp
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UTR
Exon/CDS
Intron
Rorug07G0168800.1

Sequence Viewer

Length: 621 bp
ATGGCCAAGGTTCATCCTCTCACAGTAGTACCCACTGAAGATGCTTCTTCAAGTACTACTTCATGTTCTAATAAATATATGACTTCAAAAAGAGAAACATTCACAGTATGGATGAAATCGCTTTTGATGCAAGGAAATGGATGCACAGCCTTCAACGAAACTGGCGAGGTTGTGTATCGCATCGACAACTATGACGACAAGCACAGCAATGAAGTCTTCCTCATGGATCTCCGCGGCAAGGTTCTCTTCACTCTATGTGAGCACAAAATGGGAGTGTTTACGCGTTGGAAGGGCTACGCAGCCGATGGGACAAAGCCAATGTTTCGAGTAAGAAAGAGTTGCAGATCAATCTTCGGAAACGAAGAGTCAAGTTCATACAAAGTAACCATGGGATCTGATAGCAGTTTCTACAGTTTAAAAAGTTTGTCGGCCGGAAAATCAGCAGCCTTCAGAATAACAGACAGTAACGGAAGGGTTGTGGCGGAGGCGAAGCGAAAGCAATCGTCTTCAGGAGTTGTGTTGGGAGATGATGTACTGAGTTTGGTAGTGGAGGCTGATGTAGATCACTCCTTTATCATGGCTCTTGTTACTGTCTATGGCTTAATCAAGCGTCAAATATGA

Protein Analysis

206

Amino Acids

22.84

Weight (kDa)

8.99

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 33 - 199 8.7e-33 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 234, 283
AciI CCGC 3 cut(s) 232, 234, 482
AclWI GGATC 2 cut(s) 234, 400
AcoI YGGCCR 2 cut(s) 3, 429
AcuI CTGAAG 3 cut(s) 57, 433, 492
AfaI GTAC 3 cut(s) 30, 55, 534
AfiI CCNNNNNNNGG 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 281
AgsI TTSAA 3 cut(s) 51, 87, 154
Alw21I GWGCWC 1 cut(s) 264
AlwI GGATC 2 cut(s) 234, 400
AoxI GGCC 2 cut(s) 3, 429
ApeKI GCWGC 2 cut(s) 299, 443
BaeI ACNNNNGTAYC 2 cut(s) 12, 45
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 208, 498
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 311, 455
BccI CCATC 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 409
BisI GCNGC 3 cut(s) 235, 300, 444
BlsI GCNGC 3 cut(s) 236, 301, 445
BmcAI AGTACT 1 cut(s) 55
BmsI GCATC 4 cut(s) 31, 117, 131, 189
BpiI GAAGAC 2 cut(s) 208, 498
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 3 cut(s) 6, 232, 387
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 561
BseDI CCNNGG 3 cut(s) 6, 232, 387
BseGI GGATG 3 cut(s) 13, 117, 146
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 1 cut(s) 166
BseX3I CGGCCG 1 cut(s) 429
BseXI GCAGC 2 cut(s) 311, 455
Bsh1236I CGCG 2 cut(s) 234, 283
Bsh1285I CGRYCG 1 cut(s) 432
BshFI GGCC 2 cut(s) 5, 431
BsiEI CGRYCG 1 cut(s) 432
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 2 cut(s) 5, 431
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 4 cut(s) 226, 344, 392, 562
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 3 cut(s) 232, 234, 482
BspANI GGCC 2 cut(s) 5, 431
BspCNI CTCAG 1 cut(s) 528
BspFNI CGCG 2 cut(s) 234, 283
BspPI GGATC 2 cut(s) 234, 400
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 6, 232, 387
BssMI GATC 4 cut(s) 226, 344, 392, 562
BssT1I CCWWGG 2 cut(s) 6, 387
Bst4CI ACNGT 5 cut(s) 25, 106, 413, 464, 592
Bst6I CTCTTC 2 cut(s) 251, 357
BstDEI CTNAG 1 cut(s) 536
BstDSI CCRYGG 2 cut(s) 232, 387
BstF5I GGATG 3 cut(s) 13, 117, 146
BstFNI CGCG 2 cut(s) 234, 283
BstKTI GATC 4 cut(s) 229, 347, 395, 565
BstMBI GATC 4 cut(s) 226, 344, 392, 562
BstMCI CGRYCG 1 cut(s) 432
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 409
BstUI CGCG 2 cut(s) 234, 283
BstV1I GCAGC 2 cut(s) 311, 455
BstV2I GAAGAC 2 cut(s) 208, 498
BstX2I RGATCY 2 cut(s) 226, 392
BstYI RGATCY 2 cut(s) 226, 392
BstZI CGGCCG 1 cut(s) 429
BsuRI GGCC 2 cut(s) 5, 431
BtgI CCRYGG 2 cut(s) 232, 387
BtsCI GGATG 3 cut(s) 13, 117, 146
BtsIMutI CAGTG 1 cut(s) 33
Cfr42I CCGCGG 1 cut(s) 235
CseI GACGC 1 cut(s) 599
Csp6I GTAC 3 cut(s) 29, 54, 533
CviAII CATG 4 cut(s) 63, 223, 388, 577
CviQI GTAC 3 cut(s) 29, 54, 533
DdeI CTNAG 1 cut(s) 536
DpnI GATC 4 cut(s) 228, 346, 394, 564
DpnII GATC 4 cut(s) 226, 344, 392, 562
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 2 cut(s) 3, 429
EagI CGGCCG 1 cut(s) 429
Eam1104I CTCTTC 2 cut(s) 251, 357
EarI CTCTTC 2 cut(s) 251, 357
EciI GGCGGA 1 cut(s) 497
EclXI CGGCCG 1 cut(s) 429
Eco130I CCWWGG 2 cut(s) 6, 387
Eco52I CGGCCG 1 cut(s) 429
Eco57I CTGAAG 3 cut(s) 57, 433, 492
EcoT14I CCWWGG 2 cut(s) 6, 387
ErhI CCWWGG 2 cut(s) 6, 387
FaeI CATG 4 cut(s) 66, 226, 391, 580
FalI AAGNNNNNCTT 4 cut(s) 43, 75, 230, 262
FaqI GGGAC 1 cut(s) 322
FatI CATG 4 cut(s) 62, 222, 387, 576
Fnu4HI GCNGC 3 cut(s) 235, 300, 444
FokI GGATG 2 cut(s) 124, 153
Fsp4HI GCNGC 3 cut(s) 235, 300, 444
GluI GCNGC 3 cut(s) 235, 300, 444
HaeIII GGCC 2 cut(s) 5, 431
HapII CCGG 1 cut(s) 432
HgaI GACGC 1 cut(s) 599
Hin1II CATG 4 cut(s) 66, 226, 391, 580
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 432
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 3 cut(s) 356, 397, 452
Hpy188III TCNNGA 1 cut(s) 510
Hpy8I GTNNAC 1 cut(s) 279
HpyAV CCTTC 4 cut(s) 160, 283, 457, 465
HpyCH4III ACNGT 5 cut(s) 25, 106, 413, 464, 592
HpyCH4V TGCA 3 cut(s) 130, 144, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 536
Hsp92II CATG 4 cut(s) 66, 226, 391, 580
KspI CCGCGG 1 cut(s) 235
Kzo9I GATC 4 cut(s) 226, 344, 392, 562
LpnPI CCDG 3 cut(s) 147, 445, 495
Lsp1109I GCAGC 2 cut(s) 311, 455
LweI GCATC 4 cut(s) 31, 117, 131, 189
MaeIII GTNAC 3 cut(s) 382, 464, 586
MalI GATC 4 cut(s) 228, 346, 394, 564
MboI GATC 4 cut(s) 226, 344, 392, 562
MboII GAAGA 7 cut(s) 39, 50, 208, 238, 343, 374, 498
MflI RGATCY 2 cut(s) 226, 392
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 5
MluI ACGCGT 1 cut(s) 281
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 5 cut(s) 27, 160, 230, 478, 544
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 416, 602
MslI CAYNNNNRTG 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 1 cut(s) 432
MvnI CGCG 2 cut(s) 234, 283
MwoI GCNNNNNNNGC 1 cut(s) 127
NcoI CCATGG 1 cut(s) 387
NdeII GATC 4 cut(s) 226, 344, 392, 562
NlaIII CATG 4 cut(s) 66, 226, 391, 580
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PkrI GCNGC 3 cut(s) 236, 301, 445
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PsuI RGATCY 2 cut(s) 226, 392
RsaI GTAC 3 cut(s) 30, 55, 534
RsaNI GTAC 3 cut(s) 29, 54, 533
RseI CAYNNNNRTG 1 cut(s) 207
SacII CCGCGG 1 cut(s) 235
SaqAI TTAA 2 cut(s) 416, 602
SatI GCNGC 3 cut(s) 235, 300, 444
Sau3AI GATC 4 cut(s) 226, 344, 392, 562
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 1 cut(s) 374
SduI GDGCHC 1 cut(s) 264
SetI ASST 3 cut(s) 12, 171, 243
SfaNI GCATC 4 cut(s) 31, 117, 131, 189
SfcI CTRYAG 1 cut(s) 409
Sfr303I CCGCGG 1 cut(s) 235
SgrBI CCGCGG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 207
SsiI CCGC 3 cut(s) 232, 234, 482
StyI CCWWGG 2 cut(s) 6, 387
TaaI ACNGT 5 cut(s) 25, 106, 413, 464, 592
TaqI TCGA 2 cut(s) 183, 325
TatI WGTACW 2 cut(s) 53, 532
TauI GCSGC 1 cut(s) 237
Tru1I TTAA 2 cut(s) 416, 602
Tru9I TTAA 2 cut(s) 416, 602
TscAI CASTG 1 cut(s) 40
TseI GCWGC 2 cut(s) 299, 443
TspDTI ATGAA 4 cut(s) 51, 128, 225, 363
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 1 cut(s) 40
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.