Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004485

Physical Location & Seq

Genomic Coordinates Reverse (-)

35018255 .. 35023916

Gene Structure 5662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002481

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTCTCCTTCCACCCCCAGCTTCGCCTCCCTCCCTTTGCTCTTTCATTTCTCGTCCTCCATCTCTCGCCCTCAAATCCACAACCAACCTCACATTTACCAAACGTCGTCGTTCCGCATGCACAGCTTCATGGCAAGAGCTTGTCGGAGTTGTGGTATTCTCGGCGATTCCATTCACCGCCGTGAAAGCCATAGCCAATAGCGCTCTCGGAGAGTCGCTGCAGCGGCGATTGGAAGAAAGGAAGAAAGTTGCGGTTGAGAATTCTTCCAGGTTCAGGGCCTTGGCCCAAAATGCTCGAAATCGGAGCTTGTGGTATGGAGAAGAGCGTCCCCGCTGGCTTGGTCCTATCCCATATGATTATCCGGCATATCTTACTGGAGAGCTACCTGGGGATTATGGTTTTGATGTTGTAGGTCTGAGCAAGGATCCAGTGGCTTTCCAAAGATATTTTAACTTTGAAATACTCCATGCGCGTTGGGCCATGCTAGCTGCCTTTGGTGCTTTGGTTCCAGAAATTTTAGACCTGTTAGGAGCCTTTCACTTTGTTGAGCCTGTATGGTGGCGAGTTGGCTATTCAAAGCTTAAGGGAGATACACTGGACTACCTTGGCATCCCAGGACTCCACGTAGCTGGAAGCCAAGGAGTAATTGTCATAGCCATATGCCAAGTCCTCCTGATGGTTGGACCAGAATATGCAAGATATTGTGGCATTGAAGCATTAGAGCCACTGGGAATCTACTTGCCAGGTGATATTAATTACCCAGGAGGAGAGCTTTTCGATCCCTTGAATCTCTCGAAAGACCCTGTAGCTTTTGAAGAGCTGAAGGTGAAAGAGATAAAGAATGGGCGCCTAGCTATGGTTGCCTGGTTGGGCTTTTACAGTCAAGCAGCCTTGACAGGTAAAGGTCCTGTACAGAACCTACTTGAACACATTTCAGATCCCCTACACAATAATCTGTTGTCAATACTCAACCTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

328

Amino Acids

36.15

Weight (kDa)

7.66

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	122 - 297	8.2e-43	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76570
fragaria_vesca	FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480
malus_domestica	MD06G1001700.v1.1
prunus_persica	Prupe.5G002700_v2.0.a1 Prupe.5G002700_v2.0.a1
pyrus_communis	pycom06g00180
rosa_chinensis	RchiOBHm_Chr7g0217391
rosa_laevigata	RLG00000002481
rosa_multiflora	Rmu_co8208352.1_g000001 Rmu_sc0000145.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242130 Rroxscaffold_3G00242220
rosa_rugosa	Rorug07G0168700 Rorug07G0168800
rosa_samantha	Rh7AG308400 Rh7BG299100 Rh7CG327700 Rh7DG307700
rosa_wichuraiana	Rw7G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	849
AccII	CGCG	1 cut(s)	475
AciI	CCGC	5 cut(s)	117, 180, 226, 254, 334
AclWI	GGATC	4 cut(s)	422, 435, 776, 935
AcsI	RAATTY	2 cut(s)	262, 516
AcuI	CTGAAG	1 cut(s)	845
AcyI	GRCGYC	1 cut(s)	850
AfaI	GTAC	1 cut(s)	915
AfeI	AGCGCT	1 cut(s)	205
AfiI	CCNNNNNNNGG	3 cut(s)	276, 679, 859
AflII	CTTAAG	1 cut(s)	584
AgsI	TTSAA	6 cut(s)	461, 579, 716, 790, 818, 929
AjnI	CCWGG	6 cut(s)	269, 388, 616, 745, 763, 866
AleI	CACNNNNGTG	1 cut(s)	182
AlwI	GGATC	4 cut(s)	422, 435, 776, 935
Aor51HI	AGCGCT	1 cut(s)	205
AoxI	GGCC	3 cut(s)	279, 285, 480
ApeKI	GCWGC	4 cut(s)	220, 223, 491, 890
ApoI	RAATTY	2 cut(s)	262, 516
AseI	ATTAAT	1 cut(s)	756
AspLEI	GCGC	3 cut(s)	206, 475, 852
AspS9I	GGNCC	6 cut(s)	279, 286, 344, 480, 686, 908
AsuHPI	GGTGA	3 cut(s)	169, 761, 841
AsuNHI	GCTAGC	1 cut(s)	487
AvaII	GGWCC	3 cut(s)	344, 686, 908
BamHI	GGATCC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	849
BbvI	GCAGC	4 cut(s)	207, 235, 478, 902
BccI	CCATC	2 cut(s)	70, 673
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	6 cut(s)	271, 390, 618, 747, 765, 868
BfaI	CTAG	2 cut(s)	488, 854
BfmI	CTRYAG	2 cut(s)	221, 807
BfoI	RGCGCY	2 cut(s)	207, 853
BfrI	CTTAAG	1 cut(s)	584
BisI	GCNGC	5 cut(s)	221, 224, 227, 492, 891
BlsI	GCNGC	5 cut(s)	222, 225, 228, 493, 892
Bme1390I	CCNGG	6 cut(s)	271, 390, 618, 747, 765, 868
Bme18I	GGWCC	3 cut(s)	344, 686, 908
BmgT120I	GGNCC	6 cut(s)	279, 286, 344, 480, 686, 908
BmiI	GGNNCC	4 cut(s)	429, 510, 535, 851
BmrFI	CCNGG	6 cut(s)	271, 390, 618, 747, 765, 868
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	1 cut(s)	621
BmtI	GCTAGC	1 cut(s)	491
BmuI	ACTGGG	1 cut(s)	740
BpmI	CTGGAG	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	628
BsaHI	GRCGYC	1 cut(s)	850
BsaJI	CCNNGG	6 cut(s)	282, 389, 607, 616, 640, 763
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 636, 666
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 679, 859
Bse1I	ACTGG	4 cut(s)	382, 431, 603, 735
BseBI	CCWGG	6 cut(s)	271, 390, 618, 747, 765, 868
BseDI	CCNNGG	6 cut(s)	282, 389, 607, 616, 640, 763
BseGI	GGATG	1 cut(s)	612
BseLI	CCNNNNNNNGG	3 cut(s)	276, 679, 859
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	4 cut(s)	382, 431, 603, 735
BseRI	GAGGAG	1 cut(s)	783
BseXI	GCAGC	4 cut(s)	207, 235, 478, 902
BseYI	CCCAGC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	281, 287, 482
BshNI	GGYRCC	1 cut(s)	849
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	3 cut(s)	276, 679, 859
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	281, 287, 482
Bsp1407I	TGTACA	1 cut(s)	913
Bsp143I	GATC	3 cut(s)	427, 781, 940
BspACI	CCGC	5 cut(s)	117, 180, 226, 254, 334
BspANI	GGCC	3 cut(s)	281, 287, 482
BspCNI	CTCAG	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	475
BspLI	GGNNCC	4 cut(s)	429, 510, 535, 851
BspMAI	CTGCAG	1 cut(s)	225
BspOI	GCTAGC	1 cut(s)	491
BspPI	GGATC	4 cut(s)	422, 435, 776, 935
BspQI	GCTCTTC	2 cut(s)	318, 813
BspT107I	GGYRCC	1 cut(s)	849
BspTI	CTTAAG	1 cut(s)	584
BsrGI	TGTACA	1 cut(s)	913
BsrI	ACTGG	4 cut(s)	382, 431, 603, 735
BssECI	CCNNGG	6 cut(s)	282, 389, 607, 616, 640, 763
BssMI	GATC	3 cut(s)	427, 781, 940
BssNI	GRCGYC	1 cut(s)	850
BssT1I	CCWWGG	3 cut(s)	282, 607, 640
Bst2UI	CCWGG	6 cut(s)	271, 390, 618, 747, 765, 868
Bst4CI	ACNGT	1 cut(s)	884
Bst6I	CTCTTC	2 cut(s)	318, 813
BstACI	GRCGYC	1 cut(s)	850
BstAFI	CTTAAG	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	913
BstBAI	YACGTR	1 cut(s)	628
BstC8I	GCNNGC	3 cut(s)	121, 338, 489
BstDEI	CTNAG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	612
BstFNI	CGCG	1 cut(s)	475
BstH2I	RGCGCY	2 cut(s)	207, 853
BstHHI	GCGC	3 cut(s)	206, 475, 852
BstKTI	GATC	3 cut(s)	430, 784, 943
BstMBI	GATC	3 cut(s)	427, 781, 940
BstMWI	GCNNNNNNNGC	9 cut(s)	125, 188, 203, 226, 293, 479, 488, 500, 863
BstNI	CCWGG	6 cut(s)	271, 390, 618, 747, 765, 868
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	6 cut(s)	269, 388, 616, 745, 763, 866
BstSFI	CTRYAG	2 cut(s)	221, 807
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	4 cut(s)	207, 235, 478, 902
BstX2I	RGATCY	2 cut(s)	427, 940
BstXI	CCANNNNNNTGG	1 cut(s)	632
BstYI	RGATCY	2 cut(s)	427, 940
BsuRI	GGCC	3 cut(s)	281, 287, 482
BtsCI	GGATG	1 cut(s)	612
BtsIMutI	CAGTG	3 cut(s)	438, 596, 728
Cac8I	GCNNGC	3 cut(s)	121, 338, 489
CfoI	GCGC	3 cut(s)	206, 475, 852
Cfr13I	GGNCC	6 cut(s)	279, 286, 344, 480, 686, 908
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	914
CviAII	CATG	4 cut(s)	120, 132, 470, 484
CviQI	GTAC	1 cut(s)	914
DdeI	CTNAG	1 cut(s)	419
DinI	GGCGCC	1 cut(s)	851
DpnI	GATC	3 cut(s)	429, 783, 942
DpnII	GATC	3 cut(s)	427, 781, 940
Eam1104I	CTCTTC	2 cut(s)	318, 813
EarI	CTCTTC	2 cut(s)	318, 813
Eco130I	CCWWGG	3 cut(s)	282, 607, 640
Eco47I	GGWCC	3 cut(s)	344, 686, 908
Eco47III	AGCGCT	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	845
EcoO109I	RGGNCCY	2 cut(s)	279, 908
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	6 cut(s)	269, 388, 616, 745, 763, 866
EcoT14I	CCWWGG	3 cut(s)	282, 607, 640
EgeI	GGCGCC	1 cut(s)	851
EheI	GGCGCC	1 cut(s)	851
ErhI	CCWWGG	3 cut(s)	282, 607, 640
FaeI	CATG	4 cut(s)	123, 135, 473, 487
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	4 cut(s)	119, 131, 469, 483
FauI	CCCGC	1 cut(s)	341
FauNDI	CATATG	2 cut(s)	355, 662
Fnu4HI	GCNGC	5 cut(s)	221, 224, 227, 492, 891
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	5 cut(s)	221, 224, 227, 492, 891
FspBI	CTAG	2 cut(s)	488, 854
GlaI	GCGC	3 cut(s)	205, 474, 851
GluI	GCNGC	5 cut(s)	221, 224, 227, 492, 891
GsaI	CCCAGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	399
HaeII	RGCGCY	2 cut(s)	207, 853
HaeIII	GGCC	3 cut(s)	281, 287, 482
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	3 cut(s)	206, 475, 852
Hin1I	GRCGYC	1 cut(s)	850
Hin1II	CATG	4 cut(s)	123, 135, 473, 487
Hin6I	GCGC	3 cut(s)	204, 473, 850
HinP1I	GCGC	3 cut(s)	204, 473, 850
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	5 cut(s)	169, 215, 621, 735, 790
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	3 cut(s)	169, 761, 841
Hpy188I	TCNGA	5 cut(s)	149, 212, 306, 420, 940
Hpy188III	TCNNGA	3 cut(s)	512, 676, 796
Hpy99I	CGWCG	2 cut(s)	111, 114
HpyAV	CCTTC	2 cut(s)	20, 820
HpyCH4III	ACNGT	1 cut(s)	884
HpyCH4IV	ACGT	2 cut(s)	106, 627
HpyCH4V	TGCA	3 cut(s)	123, 223, 698
HpyF10VI	GCNNNNNNNGC	9 cut(s)	125, 188, 203, 226, 293, 479, 488, 500, 863
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	2 cut(s)	106, 627
Hsp92I	GRCGYC	1 cut(s)	850
Hsp92II	CATG	4 cut(s)	123, 135, 473, 487
HspAI	GCGC	3 cut(s)	204, 473, 850
KasI	GGCGCC	1 cut(s)	849
Kzo9I	GATC	3 cut(s)	427, 781, 940
LguI	GCTCTTC	2 cut(s)	318, 813
LmnI	GCTCC	2 cut(s)	306, 533
Lsp1109I	GCAGC	4 cut(s)	207, 235, 478, 902
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	2 cut(s)	488, 854
MaeII	ACGT	2 cut(s)	106, 627
MalI	GATC	3 cut(s)	429, 783, 942
MboI	GATC	3 cut(s)	427, 781, 940
MboII	GAAGA	5 cut(s)	248, 256, 258, 335, 830
MflI	RGATCY	2 cut(s)	427, 940
MluCI	AATT	4 cut(s)	262, 516, 648, 757
Mly113I	GGCGCC	1 cut(s)	850
MlyI	GAGTC	2 cut(s)	224, 615
MmeI	TCCRAC	2 cut(s)	127, 664
MnlI	CCTC	7 cut(s)	39, 43, 69, 83, 101, 683, 761
MseI	TTAA	3 cut(s)	453, 585, 756
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	2 cut(s)	226, 336
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	6 cut(s)	271, 390, 618, 747, 765, 868
MvaI	CCWGG	6 cut(s)	271, 390, 618, 747, 765, 868
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	9 cut(s)	125, 188, 203, 226, 293, 479, 488, 500, 863
NarI	GGCGCC	1 cut(s)	850
NdeI	CATATG	2 cut(s)	355, 662
NdeII	GATC	3 cut(s)	427, 781, 940
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	4 cut(s)	123, 135, 473, 487
NlaIV	GGNNCC	4 cut(s)	429, 510, 535, 851
NmeAIII	GCCGAG	1 cut(s)	143
NspI	RCATGY	1 cut(s)	123
OliI	CACNNNNGTG	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	123
PciSI	GCTCTTC	2 cut(s)	318, 813
PfeI	GAWTC	3 cut(s)	169, 735, 790
PkrI	GCNGC	5 cut(s)	222, 225, 228, 493, 892
PleI	GAGTC	2 cut(s)	223, 615
PluTI	GGCGCC	1 cut(s)	853
PpsI	GAGTC	2 cut(s)	223, 615
Ppu21I	YACGTR	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	908
PshBI	ATTAAT	1 cut(s)	756
Psp5II	RGGWCCY	1 cut(s)	908
Psp6I	CCWGG	6 cut(s)	269, 388, 616, 745, 763, 866
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	6 cut(s)	269, 388, 616, 745, 763, 866
PspN4I	GGNNCC	4 cut(s)	429, 510, 535, 851
PspPI	GGNCC	6 cut(s)	279, 286, 344, 480, 686, 908
PspPPI	RGGWCCY	1 cut(s)	908
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	2 cut(s)	427, 940
RsaI	GTAC	1 cut(s)	915
RsaNI	GTAC	1 cut(s)	914
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	2 cut(s)	318, 813
SaqAI	TTAA	3 cut(s)	453, 585, 756
SatI	GCNGC	5 cut(s)	221, 224, 227, 492, 891
Sau3AI	GATC	3 cut(s)	427, 781, 940
Sau96I	GGNCC	6 cut(s)	279, 286, 344, 480, 686, 908
SchI	GAGTC	2 cut(s)	224, 615
ScrFI	CCNGG	6 cut(s)	271, 390, 618, 747, 765, 868
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	2 cut(s)	221, 807
SfoI	GGCGCC	1 cut(s)	851
SinI	GGWCC	3 cut(s)	344, 686, 908
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	4 cut(s)	262, 516, 648, 757
SsiI	CCGC	5 cut(s)	117, 180, 226, 254, 334
SspDI	GGCGCC	1 cut(s)	849
SspMI	CTAG	2 cut(s)	488, 854
StyD4I	CCNGG	6 cut(s)	269, 388, 616, 745, 763, 866
StyI	CCWWGG	3 cut(s)	282, 607, 640
TaaI	ACNGT	1 cut(s)	884
TaiI	ACGT	2 cut(s)	109, 630
TaqI	TCGA	3 cut(s)	298, 780, 797
TasI	AATT	4 cut(s)	262, 516, 648, 757
TatI	WGTACW	1 cut(s)	913
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	3 cut(s)	169, 735, 790
Tru1I	TTAA	3 cut(s)	453, 585, 756
Tru9I	TTAA	3 cut(s)	453, 585, 756
TscAI	CASTG	3 cut(s)	438, 603, 735
TseI	GCWGC	4 cut(s)	220, 223, 491, 890
TspDTI	ATGAA	2 cut(s)	37, 120
TspRI	CASTG	3 cut(s)	438, 603, 735
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	3 cut(s)	344, 686, 908
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	2 cut(s)	262, 516
XceI	RCATGY	1 cut(s)	123
XspI	CTAG	2 cut(s)	488, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.