Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004485

Physical Location & Seq

Genomic Coordinates Forward (+)

28362063 .. 28370932

Gene Structure 8870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG299100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTCTCCTTCCACCACCAGCTTCGCCTTCCTCCCTTGCTTCTTTCATTCCTCGTCCTCCATCTCTCGCCCGAAAATCCACAACCAACCTCACATTTCCCAAACGTCGTCGTTCGGTATGCACAGCTTCATGGCAAGAGCTTGTGGGAGTTGTGGTATTCTCGGCGATTCCATTCACCGCCGTGAAAGCCATAGCCAATAGCGCTCTCGGAGAGTCGCTGCAGCGGCGATTGGAAGAGAGGAAGAAAGTTGCGGTTGAGAATTCTTCCAGGTTCAGGGCCTTGGCCCGAAATGCTCGAAATCGGAGCTTGTGGTATGGAGAAGAGCGTCCCCGCTGGCTTGGTCCTATCCCATATGATTATCCGGCATATCTTACTGGAGAACTACCTGGGGATTATGGTTTTGATGTTGTAGGTCTGAGCAAGGATCCGGTGGCTTTCCAAAGATATTTTAACTTTGAAATACTCCATGCGCGTTGGGCCATGCTAGCTGCCTTTGGTGCTTTGGTTCCAGAAATTTTAGACCTGTTAGGAGCCTTTCACTTTGTTGAGCCTGTATGGTGGCGAGTTGGCTATTCAAAGCTTAAGGGAGATACACTGGACTACCTTGGCATCCCAGGACTCCACGTAGCTGGAAGCCAAGGAGTAATTGTCATAGCCATATGCCAAGTCCTCCTGATGGTTGGACCAGAATATGCAAGATATTGTGGCATTGAAGCATTAGAGCCGCTGGGAATCTACTTGCCAGAAGAGAGACAACAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

255

Amino Acids

28.44

Weight (kDa)

9.25

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	122 - 241	1.8e-22	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76570
fragaria_vesca	FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480
malus_domestica	MD06G1001700.v1.1
prunus_persica	Prupe.5G002700_v2.0.a1 Prupe.5G002700_v2.0.a1
pyrus_communis	pycom06g00180
rosa_chinensis	RchiOBHm_Chr7g0217391
rosa_laevigata	RLG00000002481
rosa_multiflora	Rmu_co8208352.1_g000001 Rmu_sc0000145.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242130 Rroxscaffold_3G00242220
rosa_rugosa	Rorug07G0168700 Rorug07G0168800
rosa_samantha	Rh7AG308400 Rh7BG299100 Rh7CG327700 Rh7DG307700
rosa_wichuraiana	Rw7G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	475
AciI	CCGC	5 cut(s)	180, 226, 254, 334, 728
AclWI	GGATC	2 cut(s)	422, 435
AcsI	RAATTY	2 cut(s)	262, 516
AfeI	AGCGCT	1 cut(s)	205
AfiI	CCNNNNNNNGG	2 cut(s)	276, 679
AflII	CTTAAG	1 cut(s)	584
AgsI	TTSAA	3 cut(s)	461, 579, 716
AjnI	CCWGG	3 cut(s)	269, 388, 616
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	7 cut(s)	23, 128, 142, 309, 491, 583, 632
AluI	AGCT	7 cut(s)	23, 128, 142, 309, 491, 583, 632
Alw26I	GTCTC	1 cut(s)	748
AlwI	GGATC	2 cut(s)	422, 435
Aor51HI	AGCGCT	1 cut(s)	205
AoxI	GGCC	3 cut(s)	279, 285, 480
ApeKI	GCWGC	3 cut(s)	220, 223, 491
ApoI	RAATTY	2 cut(s)	262, 516
AspLEI	GCGC	2 cut(s)	206, 475
AspS9I	GGNCC	5 cut(s)	279, 286, 344, 480, 686
AsuHPI	GGTGA	1 cut(s)	169
AsuNHI	GCTAGC	1 cut(s)	487
AvaII	GGWCC	2 cut(s)	344, 686
BamHI	GGATCC	1 cut(s)	427
BbvI	GCAGC	3 cut(s)	207, 235, 478
BccI	CCATC	2 cut(s)	70, 673
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	3 cut(s)	271, 390, 618
BcoDI	GTCTC	1 cut(s)	748
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	207
BfrI	CTTAAG	1 cut(s)	584
BisI	GCNGC	5 cut(s)	221, 224, 227, 492, 728
BlsI	GCNGC	5 cut(s)	222, 225, 228, 493, 729
Bme1390I	CCNGG	3 cut(s)	271, 390, 618
Bme18I	GGWCC	2 cut(s)	344, 686
BmgT120I	GGNCC	5 cut(s)	279, 286, 344, 480, 686
BmiI	GGNNCC	3 cut(s)	429, 510, 535
BmrFI	CCNGG	3 cut(s)	271, 390, 618
BmsI	GCATC	1 cut(s)	621
BmtI	GCTAGC	1 cut(s)	491
BpmI	CTGGAG	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	628
BsaJI	CCNNGG	5 cut(s)	282, 389, 607, 616, 640
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 636, 666
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 679
Bse1I	ACTGG	2 cut(s)	382, 603
BseBI	CCWGG	3 cut(s)	271, 390, 618
BseDI	CCNNGG	5 cut(s)	282, 389, 607, 616, 640
BseGI	GGATG	1 cut(s)	612
BseLI	CCNNNNNNNGG	2 cut(s)	276, 679
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	2 cut(s)	382, 603
BseXI	GCAGC	3 cut(s)	207, 235, 478
BseYI	CCCAGC	1 cut(s)	730
Bsh1236I	CGCG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	281, 287, 482
BsiSI	CCGG	2 cut(s)	365, 431
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	2 cut(s)	276, 679
BsmAI	GTCTC	1 cut(s)	748
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	281, 287, 482
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	5 cut(s)	180, 226, 254, 334, 728
BspANI	GGCC	3 cut(s)	281, 287, 482
BspCNI	CTCAG	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	475
BspLI	GGNNCC	3 cut(s)	429, 510, 535
BspMAI	CTGCAG	1 cut(s)	225
BspOI	GCTAGC	1 cut(s)	491
BspPI	GGATC	2 cut(s)	422, 435
BspQI	GCTCTTC	1 cut(s)	318
BspTI	CTTAAG	1 cut(s)	584
BsrI	ACTGG	2 cut(s)	382, 603
BssECI	CCNNGG	5 cut(s)	282, 389, 607, 616, 640
BssMI	GATC	1 cut(s)	427
BssT1I	CCWWGG	3 cut(s)	282, 607, 640
Bst2UI	CCWGG	3 cut(s)	271, 390, 618
Bst6I	CTCTTC	3 cut(s)	231, 318, 744
BstAFI	CTTAAG	1 cut(s)	584
BstBAI	YACGTR	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	338, 489
BstDEI	CTNAG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	612
BstFNI	CGCG	1 cut(s)	475
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	206, 475
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	1 cut(s)	748
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	7 cut(s)	188, 203, 226, 293, 479, 488, 500
BstNI	CCWGG	3 cut(s)	271, 390, 618
BstSCI	CCNGG	3 cut(s)	269, 388, 616
BstSFI	CTRYAG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	3 cut(s)	207, 235, 478
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	3 cut(s)	281, 287, 482
BtsCI	GGATG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	596
Cac8I	GCNNGC	2 cut(s)	338, 489
CfoI	GCGC	2 cut(s)	206, 475
Cfr13I	GGNCC	5 cut(s)	279, 286, 344, 480, 686
CseI	GACGC	1 cut(s)	317
CviAII	CATG	3 cut(s)	132, 470, 484
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
Eam1104I	CTCTTC	3 cut(s)	231, 318, 744
EarI	CTCTTC	3 cut(s)	231, 318, 744
Eco130I	CCWWGG	3 cut(s)	282, 607, 640
Eco47I	GGWCC	2 cut(s)	344, 686
Eco47III	AGCGCT	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	3 cut(s)	269, 388, 616
EcoT14I	CCWWGG	3 cut(s)	282, 607, 640
ErhI	CCWWGG	3 cut(s)	282, 607, 640
FaeI	CATG	3 cut(s)	135, 473, 487
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	3 cut(s)	131, 469, 483
FauI	CCCGC	1 cut(s)	341
FauNDI	CATATG	2 cut(s)	355, 662
Fnu4HI	GCNGC	5 cut(s)	221, 224, 227, 492, 728
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	5 cut(s)	221, 224, 227, 492, 728
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	2 cut(s)	205, 474
GluI	GCNGC	5 cut(s)	221, 224, 227, 492, 728
GsaI	CCCAGC	1 cut(s)	734
GsuI	CTGGAG	1 cut(s)	399
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	281, 287, 482
HapII	CCGG	2 cut(s)	365, 431
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	2 cut(s)	206, 475
Hin1II	CATG	3 cut(s)	135, 473, 487
Hin6I	GCGC	2 cut(s)	204, 473
HinP1I	GCGC	2 cut(s)	204, 473
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	4 cut(s)	169, 215, 621, 735
HpaII	CCGG	2 cut(s)	365, 431
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	212, 306, 420
Hpy188III	TCNNGA	2 cut(s)	512, 676
Hpy99I	CGWCG	2 cut(s)	111, 114
HpyAV	CCTTC	2 cut(s)	20, 39
HpyCH4IV	ACGT	2 cut(s)	106, 627
HpyCH4V	TGCA	3 cut(s)	123, 223, 698
HpyF10VI	GCNNNNNNNGC	7 cut(s)	188, 203, 226, 293, 479, 488, 500
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	2 cut(s)	106, 627
Hsp92II	CATG	3 cut(s)	135, 473, 487
HspAI	GCGC	2 cut(s)	204, 473
Kzo9I	GATC	1 cut(s)	427
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	306, 533
Lsp1109I	GCAGC	3 cut(s)	207, 235, 478
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	2 cut(s)	106, 627
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	5 cut(s)	248, 256, 258, 335, 761
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	3 cut(s)	262, 516, 648
MlyI	GAGTC	2 cut(s)	224, 615
MmeI	TCCRAC	1 cut(s)	664
MnlI	CCTC	6 cut(s)	43, 63, 69, 101, 234, 683
MseI	TTAA	2 cut(s)	453, 585
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	3 cut(s)	226, 336, 730
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	2 cut(s)	365, 431
MspR9I	CCNGG	3 cut(s)	271, 390, 618
MvaI	CCWGG	3 cut(s)	271, 390, 618
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	7 cut(s)	188, 203, 226, 293, 479, 488, 500
NdeI	CATATG	2 cut(s)	355, 662
NdeII	GATC	1 cut(s)	427
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	3 cut(s)	135, 473, 487
NlaIV	GGNNCC	3 cut(s)	429, 510, 535
NmeAIII	GCCGAG	1 cut(s)	143
OliI	CACNNNNGTG	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	169, 735
PkrI	GCNGC	5 cut(s)	222, 225, 228, 493, 729
PleI	GAGTC	2 cut(s)	223, 615
PpsI	GAGTC	2 cut(s)	223, 615
Ppu21I	YACGTR	1 cut(s)	628
Psp6I	CCWGG	3 cut(s)	269, 388, 616
PspFI	CCCAGC	1 cut(s)	730
PspGI	CCWGG	3 cut(s)	269, 388, 616
PspN4I	GGNNCC	3 cut(s)	429, 510, 535
PspPI	GGNCC	5 cut(s)	279, 286, 344, 480, 686
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	453, 585
SatI	GCNGC	5 cut(s)	221, 224, 227, 492, 728
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	5 cut(s)	279, 286, 344, 480, 686
SchI	GAGTC	2 cut(s)	224, 615
ScrFI	CCNGG	3 cut(s)	271, 390, 618
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	1 cut(s)	221
SinI	GGWCC	2 cut(s)	344, 686
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	3 cut(s)	262, 516, 648
SsiI	CCGC	5 cut(s)	180, 226, 254, 334, 728
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	3 cut(s)	269, 388, 616
StyI	CCWWGG	3 cut(s)	282, 607, 640
TaiI	ACGT	2 cut(s)	109, 630
TaqI	TCGA	1 cut(s)	298
TasI	AATT	3 cut(s)	262, 516, 648
TauI	GCSGC	2 cut(s)	229, 730
TfiI	GAWTC	2 cut(s)	169, 735
Tru1I	TTAA	2 cut(s)	453, 585
Tru9I	TTAA	2 cut(s)	453, 585
TscAI	CASTG	1 cut(s)	603
TseI	GCWGC	3 cut(s)	220, 223, 491
TspDTI	ATGAA	2 cut(s)	37, 120
TspRI	CASTG	1 cut(s)	603
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	2 cut(s)	344, 686
XapI	RAATTY	2 cut(s)	262, 516
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.