Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004485

Physical Location & Seq

Genomic Coordinates Reverse (-)

34603225 .. 34609515

Gene Structure 6291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCTCTCCTTCCACCACCAGCTGCGCCTTCCTCCCTTTCCTCTTTCATCTCTCGCCCTCCATCTCTCGCCCTCAAATCCACAACCAACCTCACATTTCCCAAACGTCGTCGTTCCGTATGCACAGCTTCATGGCAAGAGCTTGTCGGAGTTGTGGTATTCTCGGCGATTCCATTCACCGCCGTGAAAGCCATAGCCAATAGCGCTCTCGGAGAGTCGCTGCAGCGGCGATTGGAAGAAAGGAAGAAAGTTGCGGTTGAGAATTCTTCCAGGTTCAGGGCCTTGGCCCAAAATGCTCGAAATCGGAGCTTGTGGTATGGAGTAGAGCGTCCCCGCTGGCTTGGTCCTATCCCATATGATTATCCGACATATCTTACTGGAGAACTACCTGGGGATTATGGTTTTGATGTTGTAGGTCTGAGCAAGGATCCAGTGGCTTTCCAAAGATATTTTAAATATGAAAGAGCTCTCTTCCATGCTACTGCTGATGGAAGCTTTGAAATACTCCATGCGCGTTGGGCCATGCTAGCTGCCTTTGGTGCTTTGGTTCCAGAAATTTTAGACCTGTTAGGAGCCTTTCACTTTGTTGAGCCTGTATGGTGGCGAGTTGGCTATTCAAAGCTTAAGGGAGATACACTGGACTACCTTGGCATCCCAGGACTCCACGTAGCTGGAAGCCAAGGAGTAATTGTCATAGCCATATGCCAAGTCCTCCTGATGGTTGGACCAGAATATGCAAGATATTGTGGCATTGAAGCATTAGAGCCGCTGGGAATCTACTTGCCAGGTGATATTAATTACCCAGGAGGAGAGCTTTTTGATCCCTTGAACCTATCGAAAGACCCTGTAGCTTTTGAAGAGCTGAAGGTGAAAGAGATAAAGAATGGGCGCCTAGCTATGGTTGCCTGGTTGGGCTTTTACAGTCAAGCAGCCTTGACAGGTAAAGGTCCTGTACAGAACCTACTTGAACACATTTCAGATCCCCTACACAATAATCTGTTGTCAATACTCAACCTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

340

Amino Acids

37.56

Weight (kDa)

8.31

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	122 - 310	1.2e-37	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76570
fragaria_vesca	FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480
malus_domestica	MD06G1001700.v1.1
prunus_persica	Prupe.5G002700_v2.0.a1 Prupe.5G002700_v2.0.a1
pyrus_communis	pycom06g00180
rosa_chinensis	RchiOBHm_Chr7g0217391
rosa_laevigata	RLG00000002481
rosa_multiflora	Rmu_co8208352.1_g000001 Rmu_sc0000145.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242130 Rroxscaffold_3G00242220
rosa_rugosa	Rorug07G0168700 Rorug07G0168800
rosa_samantha	Rh7AG308400 Rh7BG299100 Rh7CG327700 Rh7DG307700
rosa_wichuraiana	Rw7G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	888
AccII	CGCG	1 cut(s)	514
AciI	CCGC	5 cut(s)	180, 226, 254, 334, 767
AclWI	GGATC	4 cut(s)	422, 435, 815, 974
AcsI	RAATTY	2 cut(s)	262, 555
AcuI	CTGAAG	1 cut(s)	884
AcyI	GRCGYC	1 cut(s)	889
AfaI	GTAC	1 cut(s)	954
AfeI	AGCGCT	1 cut(s)	205
AfiI	CCNNNNNNNGG	3 cut(s)	276, 718, 898
AflII	CTTAAG	1 cut(s)	623
AgsI	TTSAA	6 cut(s)	500, 618, 755, 829, 857, 968
AjnI	CCWGG	6 cut(s)	269, 388, 655, 784, 802, 905
AleI	CACNNNNGTG	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	469
AlwI	GGATC	4 cut(s)	422, 435, 815, 974
Aor51HI	AGCGCT	1 cut(s)	205
AoxI	GGCC	3 cut(s)	279, 285, 519
ApeKI	GCWGC	5 cut(s)	23, 220, 223, 530, 929
ApoI	RAATTY	2 cut(s)	262, 555
AseI	ATTAAT	1 cut(s)	795
AspLEI	GCGC	4 cut(s)	28, 206, 514, 891
AspS9I	GGNCC	6 cut(s)	279, 286, 344, 519, 725, 947
AsuHPI	GGTGA	3 cut(s)	169, 800, 880
AsuNHI	GCTAGC	1 cut(s)	526
AvaII	GGWCC	3 cut(s)	344, 725, 947
BamHI	GGATCC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	888
BanII	GRGCYC	1 cut(s)	469
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	5 cut(s)	10, 207, 235, 517, 941
BccI	CCATC	3 cut(s)	70, 482, 712
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	6 cut(s)	271, 390, 657, 786, 804, 907
BfaI	CTAG	2 cut(s)	527, 893
BfmI	CTRYAG	2 cut(s)	221, 846
BfoI	RGCGCY	2 cut(s)	207, 892
BfrI	CTTAAG	1 cut(s)	623
BisI	GCNGC	7 cut(s)	24, 221, 224, 227, 531, 767, 930
BlsI	GCNGC	7 cut(s)	25, 222, 225, 228, 532, 768, 931
Bme1390I	CCNGG	6 cut(s)	271, 390, 657, 786, 804, 907
Bme18I	GGWCC	3 cut(s)	344, 725, 947
BmgT120I	GGNCC	6 cut(s)	279, 286, 344, 519, 725, 947
BmiI	GGNNCC	4 cut(s)	429, 549, 574, 890
BmrFI	CCNGG	6 cut(s)	271, 390, 657, 786, 804, 907
BmsI	GCATC	1 cut(s)	660
BmtI	GCTAGC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	667
BsaHI	GRCGYC	1 cut(s)	889
BsaJI	CCNNGG	6 cut(s)	282, 389, 646, 655, 679, 802
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 675, 705
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 718, 898
Bse1I	ACTGG	3 cut(s)	382, 431, 642
BseBI	CCWGG	6 cut(s)	271, 390, 657, 786, 804, 907
BseDI	CCNNGG	6 cut(s)	282, 389, 646, 655, 679, 802
BseGI	GGATG	1 cut(s)	651
BseLI	CCNNNNNNNGG	3 cut(s)	276, 718, 898
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	3 cut(s)	382, 431, 642
BseRI	GAGGAG	1 cut(s)	822
BseXI	GCAGC	5 cut(s)	10, 207, 235, 517, 941
BseYI	CCCAGC	1 cut(s)	769
Bsh1236I	CGCG	1 cut(s)	514
BshFI	GGCC	3 cut(s)	281, 287, 521
BshNI	GGYRCC	1 cut(s)	888
BsiHKAI	GWGCWC	1 cut(s)	469
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	3 cut(s)	276, 718, 898
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	281, 287, 521
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp1407I	TGTACA	1 cut(s)	952
Bsp143I	GATC	3 cut(s)	427, 820, 979
BspACI	CCGC	5 cut(s)	180, 226, 254, 334, 767
BspANI	GGCC	3 cut(s)	281, 287, 521
BspCNI	CTCAG	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	514
BspLI	GGNNCC	4 cut(s)	429, 549, 574, 890
BspMAI	CTGCAG	1 cut(s)	225
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	4 cut(s)	422, 435, 815, 974
BspQI	GCTCTTC	1 cut(s)	852
BspT107I	GGYRCC	1 cut(s)	888
BspTI	CTTAAG	1 cut(s)	623
BsrGI	TGTACA	1 cut(s)	952
BsrI	ACTGG	3 cut(s)	382, 431, 642
BssECI	CCNNGG	6 cut(s)	282, 389, 646, 655, 679, 802
BssMI	GATC	3 cut(s)	427, 820, 979
BssNI	GRCGYC	1 cut(s)	889
BssT1I	CCWWGG	3 cut(s)	282, 646, 679
Bst2UI	CCWGG	6 cut(s)	271, 390, 657, 786, 804, 907
Bst4CI	ACNGT	1 cut(s)	923
Bst6I	CTCTTC	2 cut(s)	476, 852
BstACI	GRCGYC	1 cut(s)	889
BstAFI	CTTAAG	1 cut(s)	623
BstAUI	TGTACA	1 cut(s)	952
BstBAI	YACGTR	1 cut(s)	667
BstC8I	GCNNGC	2 cut(s)	338, 528
BstDEI	CTNAG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	651
BstFNI	CGCG	1 cut(s)	514
BstH2I	RGCGCY	2 cut(s)	207, 892
BstHHI	GCGC	4 cut(s)	28, 206, 514, 891
BstKTI	GATC	3 cut(s)	430, 823, 982
BstMBI	GATC	3 cut(s)	427, 820, 979
BstMWI	GCNNNNNNNGC	8 cut(s)	188, 203, 226, 293, 518, 527, 539, 902
BstNI	CCWGG	6 cut(s)	271, 390, 657, 786, 804, 907
BstSCI	CCNGG	6 cut(s)	269, 388, 655, 784, 802, 905
BstSFI	CTRYAG	2 cut(s)	221, 846
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	5 cut(s)	10, 207, 235, 517, 941
BstX2I	RGATCY	2 cut(s)	427, 979
BstXI	CCANNNNNNTGG	1 cut(s)	671
BstYI	RGATCY	2 cut(s)	427, 979
BsuRI	GGCC	3 cut(s)	281, 287, 521
BtsCI	GGATG	1 cut(s)	651
BtsIMutI	CAGTG	2 cut(s)	438, 635
Cac8I	GCNNGC	2 cut(s)	338, 528
CfoI	GCGC	4 cut(s)	28, 206, 514, 891
Cfr13I	GGNCC	6 cut(s)	279, 286, 344, 519, 725, 947
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	953
CviAII	CATG	4 cut(s)	132, 476, 509, 523
CviQI	GTAC	1 cut(s)	953
DdeI	CTNAG	1 cut(s)	419
DinI	GGCGCC	1 cut(s)	890
DpnI	GATC	3 cut(s)	429, 822, 981
DpnII	GATC	3 cut(s)	427, 820, 979
DraI	TTTAAA	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	476, 852
EarI	CTCTTC	2 cut(s)	476, 852
Ecl136II	GAGCTC	1 cut(s)	467
Eco130I	CCWWGG	3 cut(s)	282, 646, 679
Eco24I	GRGCYC	1 cut(s)	469
Eco47I	GGWCC	3 cut(s)	344, 725, 947
Eco47III	AGCGCT	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	884
EcoICRI	GAGCTC	1 cut(s)	467
EcoO109I	RGGNCCY	2 cut(s)	279, 947
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	6 cut(s)	269, 388, 655, 784, 802, 905
EcoT14I	CCWWGG	3 cut(s)	282, 646, 679
EcoT38I	GRGCYC	1 cut(s)	469
EgeI	GGCGCC	1 cut(s)	890
EheI	GGCGCC	1 cut(s)	890
ErhI	CCWWGG	3 cut(s)	282, 646, 679
FaeI	CATG	4 cut(s)	135, 479, 512, 526
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	4 cut(s)	131, 475, 508, 522
FauI	CCCGC	1 cut(s)	341
FauNDI	CATATG	2 cut(s)	355, 701
Fnu4HI	GCNGC	7 cut(s)	24, 221, 224, 227, 531, 767, 930
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	7 cut(s)	24, 221, 224, 227, 531, 767, 930
FspBI	CTAG	2 cut(s)	527, 893
GlaI	GCGC	4 cut(s)	27, 205, 513, 890
GluI	GCNGC	7 cut(s)	24, 221, 224, 227, 531, 767, 930
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	1 cut(s)	399
HaeII	RGCGCY	2 cut(s)	207, 892
HaeIII	GGCC	3 cut(s)	281, 287, 521
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	4 cut(s)	28, 206, 514, 891
Hin1I	GRCGYC	1 cut(s)	889
Hin1II	CATG	4 cut(s)	135, 479, 512, 526
Hin6I	GCGC	4 cut(s)	26, 204, 512, 889
HinP1I	GCGC	4 cut(s)	26, 204, 512, 889
HindIII	AAGCTT	2 cut(s)	493, 620
HinfI	GANTC	4 cut(s)	169, 215, 660, 774
HphI	GGTGA	3 cut(s)	169, 800, 880
Hpy188I	TCNGA	6 cut(s)	149, 212, 306, 366, 420, 979
Hpy188III	TCNNGA	2 cut(s)	551, 715
Hpy99I	CGWCG	2 cut(s)	111, 114
HpyAV	CCTTC	3 cut(s)	20, 39, 859
HpyCH4III	ACNGT	1 cut(s)	923
HpyCH4IV	ACGT	2 cut(s)	106, 666
HpyCH4V	TGCA	3 cut(s)	123, 223, 737
HpyF10VI	GCNNNNNNNGC	8 cut(s)	188, 203, 226, 293, 518, 527, 539, 902
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	2 cut(s)	106, 666
Hsp92I	GRCGYC	1 cut(s)	889
Hsp92II	CATG	4 cut(s)	135, 479, 512, 526
HspAI	GCGC	4 cut(s)	26, 204, 512, 889
KasI	GGCGCC	1 cut(s)	888
Kzo9I	GATC	3 cut(s)	427, 820, 979
LguI	GCTCTTC	1 cut(s)	852
LmnI	GCTCC	2 cut(s)	306, 572
Lsp1109I	GCAGC	5 cut(s)	10, 207, 235, 517, 941
LweI	GCATC	1 cut(s)	660
MaeI	CTAG	2 cut(s)	527, 893
MaeII	ACGT	2 cut(s)	106, 666
MalI	GATC	3 cut(s)	429, 822, 981
MboI	GATC	3 cut(s)	427, 820, 979
MboII	GAAGA	5 cut(s)	248, 256, 258, 463, 869
MflI	RGATCY	2 cut(s)	427, 979
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	4 cut(s)	262, 555, 687, 796
Mly113I	GGCGCC	1 cut(s)	889
MlyI	GAGTC	2 cut(s)	224, 654
MmeI	TCCRAC	3 cut(s)	127, 389, 703
MnlI	CCTC	7 cut(s)	43, 52, 69, 83, 101, 722, 800
MseI	TTAA	3 cut(s)	453, 624, 795
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	4 cut(s)	23, 226, 336, 769
MspCI	CTTAAG	1 cut(s)	623
MspR9I	CCNGG	6 cut(s)	271, 390, 657, 786, 804, 907
MvaI	CCWGG	6 cut(s)	271, 390, 657, 786, 804, 907
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	8 cut(s)	188, 203, 226, 293, 518, 527, 539, 902
NarI	GGCGCC	1 cut(s)	889
NdeI	CATATG	2 cut(s)	355, 701
NdeII	GATC	3 cut(s)	427, 820, 979
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	4 cut(s)	135, 479, 512, 526
NlaIV	GGNNCC	4 cut(s)	429, 549, 574, 890
NmeAIII	GCCGAG	1 cut(s)	143
OliI	CACNNNNGTG	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	852
PfeI	GAWTC	2 cut(s)	169, 774
PkrI	GCNGC	7 cut(s)	25, 222, 225, 228, 532, 768, 931
PleI	GAGTC	2 cut(s)	223, 654
PluTI	GGCGCC	1 cut(s)	892
PpsI	GAGTC	2 cut(s)	223, 654
Ppu21I	YACGTR	1 cut(s)	667
PpuMI	RGGWCCY	1 cut(s)	947
PshBI	ATTAAT	1 cut(s)	795
Psp124BI	GAGCTC	1 cut(s)	469
Psp5II	RGGWCCY	1 cut(s)	947
Psp6I	CCWGG	6 cut(s)	269, 388, 655, 784, 802, 905
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	6 cut(s)	269, 388, 655, 784, 802, 905
PspN4I	GGNNCC	4 cut(s)	429, 549, 574, 890
PspPI	GGNCC	6 cut(s)	279, 286, 344, 519, 725, 947
PspPPI	RGGWCCY	1 cut(s)	947
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	2 cut(s)	427, 979
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	954
RsaNI	GTAC	1 cut(s)	953
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	469
SapI	GCTCTTC	1 cut(s)	852
SaqAI	TTAA	3 cut(s)	453, 624, 795
SatI	GCNGC	7 cut(s)	24, 221, 224, 227, 531, 767, 930
Sau3AI	GATC	3 cut(s)	427, 820, 979
Sau96I	GGNCC	6 cut(s)	279, 286, 344, 519, 725, 947
SchI	GAGTC	2 cut(s)	224, 654
ScrFI	CCNGG	6 cut(s)	271, 390, 657, 786, 804, 907
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	1 cut(s)	660
SfcI	CTRYAG	2 cut(s)	221, 846
SfoI	GGCGCC	1 cut(s)	890
SinI	GGWCC	3 cut(s)	344, 725, 947
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	4 cut(s)	262, 555, 687, 796
SsiI	CCGC	5 cut(s)	180, 226, 254, 334, 767
SspDI	GGCGCC	1 cut(s)	888
SspMI	CTAG	2 cut(s)	527, 893
SstI	GAGCTC	1 cut(s)	469
StyD4I	CCNGG	6 cut(s)	269, 388, 655, 784, 802, 905
StyI	CCWWGG	3 cut(s)	282, 646, 679
TaaI	ACNGT	1 cut(s)	923
TaiI	ACGT	2 cut(s)	109, 669
TaqI	TCGA	2 cut(s)	298, 836
TasI	AATT	4 cut(s)	262, 555, 687, 796
TatI	WGTACW	1 cut(s)	952
TauI	GCSGC	2 cut(s)	229, 769
TfiI	GAWTC	2 cut(s)	169, 774
Tru1I	TTAA	3 cut(s)	453, 624, 795
Tru9I	TTAA	3 cut(s)	453, 624, 795
TscAI	CASTG	2 cut(s)	438, 642
TseI	GCWGC	5 cut(s)	23, 220, 223, 530, 929
TspDTI	ATGAA	3 cut(s)	37, 120, 474
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	438, 642
Vha464I	CTTAAG	1 cut(s)	623
VpaK11BI	GGWCC	3 cut(s)	344, 725, 947
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	2 cut(s)	262, 555
XspI	CTAG	2 cut(s)	527, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.