Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004485

Physical Location & Seq

Genomic Coordinates Forward (+)

17946190 .. 17953047

Gene Structure 6858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26480.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCTCTCCTTCCACCACCAGCTTCGCCTTGCTTCCTTTCCTCTTTCATCCCTCGTCCTCCATCTCTCACCCTAAAATCCACAACCAGCCTCGCATTTCCAAAACGTCGTCGTTCTCTATGCACAGCTTCATGGCAAGAGCTTGTGGGAGTGGTGGTATTCTCGGCGGTTCCATTCACCGCCGTGAAAGCCATAGCCAATAGCGCGCTCGGGGAGTCGCTGCAGCGGCGATTGGAGGAGAGGAAGAAAGCTGCGGTTGAGAATTCTTCCAGGTTTAAGGCCTTGGCCCAAAATGCTCGAAATCGGAGCTTGTGGTATGGAGAAGAGCGTCCCCGATGGCTTGGTCCAATTCCATATGATTATCCAGAACATCTTACTGGAGAACTACCTGGGGATTATGGTTTTGATGTTGTAGGTCTGAGCAAGGATCCTGTGGCTTTCCAGAGATACTTTAACTTTGAAATACTCCATGCACGTTGGGCCATGCTTGCTGCCTTTGGTGCTTTAGTTCCAGAAATTTTAGACCTGTTAGGAGCCTTTCACTTTGTTGAGCCTGTATGGTGGCGAGTTGGCTATTCAAAACTAAAGGGAGATACGCTGGACTACCTTGGCATCCCAGGGCTCCATGTAGCTGGAAGCCAAGGAGTAATTGTCATAGCCATATGCCAAGTTCTCCTGATGGTTGGACCAGAATATGCAAGATATTGTGGAATTGAAGCATTAGAGCCACTGGGAATTTACTTGCCAGGTGATATTAATTACCCAGGAGGAGAGCTTTTTGATCCCTTGAACCTCTCCAGAGACCCTGTCGCTTTTGAGGAGCTGAAGGTGAAAGAGATAAAGAACGGACGCCTAGCTATGGTTGCCTGGTTAGGCTTTTACAGTCAAGCAGCATTGACAGGTAGTGGTTCTGAGAATGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

309

Amino Acids

34.01

Weight (kDa)

6.91

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	58 - 138	1.9e-18	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76570
fragaria_vesca	FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480
malus_domestica	MD06G1001700.v1.1
prunus_persica	Prupe.5G002700_v2.0.a1 Prupe.5G002700_v2.0.a1
pyrus_communis	pycom06g00180
rosa_chinensis	RchiOBHm_Chr7g0217391
rosa_laevigata	RLG00000002481
rosa_multiflora	Rmu_co8208352.1_g000001 Rmu_sc0000145.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242130 Rroxscaffold_3G00242220
rosa_rugosa	Rorug07G0168700 Rorug07G0168800
rosa_samantha	Rh7AG308400 Rh7BG299100 Rh7CG327700 Rh7DG307700
rosa_wichuraiana	Rw7G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	206
AciI	CCGC	4 cut(s)	167, 180, 226, 254
AclWI	GGATC	3 cut(s)	422, 435, 776
AcsI	RAATTY	3 cut(s)	262, 516, 735
AcuI	CTGAAG	1 cut(s)	845
AcyI	GRCGYC	1 cut(s)	850
AfiI	CCNNNNNNNGG	1 cut(s)	859
AgsI	TTSAA	4 cut(s)	461, 579, 716, 790
AjnI	CCWGG	6 cut(s)	269, 388, 616, 745, 763, 866
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	9 cut(s)	23, 128, 142, 251, 309, 632, 775, 823, 857
AluI	AGCT	9 cut(s)	23, 128, 142, 251, 309, 632, 775, 823, 857
Alw26I	GTCTC	1 cut(s)	795
AlwI	GGATC	3 cut(s)	422, 435, 776
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	3 cut(s)	279, 285, 480
ApeKI	GCWGC	5 cut(s)	220, 223, 251, 491, 890
ApoI	RAATTY	3 cut(s)	262, 516, 735
AseI	ATTAAT	1 cut(s)	756
AspLEI	GCGC	2 cut(s)	206, 208
AspS9I	GGNCC	4 cut(s)	286, 344, 480, 686
AsuHPI	GGTGA	4 cut(s)	61, 169, 761, 841
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	344, 686
BamHI	GGATCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	624
BbvI	GCAGC	5 cut(s)	207, 235, 238, 478, 902
BccI	CCATC	3 cut(s)	70, 330, 673
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	6 cut(s)	271, 390, 618, 747, 765, 868
BcoDI	GTCTC	1 cut(s)	795
BfaI	CTAG	1 cut(s)	854
BfmI	CTRYAG	1 cut(s)	221
BisI	GCNGC	6 cut(s)	221, 224, 227, 252, 492, 891
BlsI	GCNGC	6 cut(s)	222, 225, 228, 253, 493, 892
Bme1390I	CCNGG	6 cut(s)	271, 390, 618, 747, 765, 868
Bme18I	GGWCC	2 cut(s)	344, 686
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	4 cut(s)	286, 344, 480, 686
BmiI	GGNNCC	4 cut(s)	171, 429, 535, 623
BmrFI	CCNGG	6 cut(s)	271, 390, 618, 747, 765, 868
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	1 cut(s)	621
BmuI	ACTGGG	1 cut(s)	740
BpmI	CTGGAG	2 cut(s)	399, 781
BsaHI	GRCGYC	1 cut(s)	850
BsaI	GGTCTC	1 cut(s)	795
BsaJI	CCNNGG	7 cut(s)	282, 389, 607, 616, 617, 640, 763
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 636, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	859
Bse1I	ACTGG	2 cut(s)	382, 735
BseBI	CCWGG	6 cut(s)	271, 390, 618, 747, 765, 868
BseDI	CCNNGG	7 cut(s)	282, 389, 607, 616, 617, 640, 763
BseGI	GGATG	2 cut(s)	48, 612
BseLI	CCNNNNNNNGG	1 cut(s)	859
BseMII	CTCAG	2 cut(s)	410, 903
BseNI	ACTGG	2 cut(s)	382, 735
BsePI	GCGCGC	1 cut(s)	204
BseRI	GAGGAG	3 cut(s)	251, 783, 833
BseXI	GCAGC	5 cut(s)	207, 235, 238, 478, 902
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	3 cut(s)	281, 287, 482
BsiHKCI	CYCGRG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	859
BsmAI	GTCTC	1 cut(s)	795
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	281, 287, 482
Bso31I	GGTCTC	1 cut(s)	795
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	2 cut(s)	427, 781
BspACI	CCGC	4 cut(s)	167, 180, 226, 254
BspANI	GGCC	3 cut(s)	281, 287, 482
BspCNI	CTCAG	2 cut(s)	411, 904
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	4 cut(s)	171, 429, 535, 623
BspMAI	CTGCAG	1 cut(s)	225
BspPI	GGATC	3 cut(s)	422, 435, 776
BspQI	GCTCTTC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	795
BsrI	ACTGG	2 cut(s)	382, 735
BssECI	CCNNGG	7 cut(s)	282, 389, 607, 616, 617, 640, 763
BssHII	GCGCGC	1 cut(s)	204
BssMI	GATC	2 cut(s)	427, 781
BssNI	GRCGYC	1 cut(s)	850
BssT1I	CCWWGG	3 cut(s)	282, 607, 640
Bst2UI	CCWGG	6 cut(s)	271, 390, 618, 747, 765, 868
Bst4CI	ACNGT	1 cut(s)	884
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	850
BstC8I	GCNNGC	2 cut(s)	206, 489
BstDEI	CTNAG	2 cut(s)	419, 912
BstF5I	GGATG	2 cut(s)	48, 612
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	206, 208
BstKTI	GATC	2 cut(s)	430, 784
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	2 cut(s)	427, 781
BstMWI	GCNNNNNNNGC	8 cut(s)	188, 203, 226, 293, 479, 488, 500, 863
BstNI	CCWGG	6 cut(s)	271, 390, 618, 747, 765, 868
BstSCI	CCNGG	6 cut(s)	269, 388, 616, 745, 763, 866
BstSFI	CTRYAG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	5 cut(s)	207, 235, 238, 478, 902
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	3 cut(s)	281, 287, 482
BtsCI	GGATG	2 cut(s)	48, 612
BtsIMutI	CAGTG	1 cut(s)	728
Cac8I	GCNNGC	2 cut(s)	206, 489
CfoI	GCGC	2 cut(s)	206, 208
Cfr13I	GGNCC	4 cut(s)	286, 344, 480, 686
CseI	GACGC	2 cut(s)	317, 858
CviAII	CATG	4 cut(s)	132, 470, 484, 626
DdeI	CTNAG	2 cut(s)	419, 912
DpnI	GATC	2 cut(s)	429, 783
DpnII	GATC	2 cut(s)	427, 781
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	3 cut(s)	282, 607, 640
Eco147I	AGGCCT	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	624
Eco31I	GGTCTC	1 cut(s)	795
Eco47I	GGWCC	2 cut(s)	344, 686
Eco57I	CTGAAG	1 cut(s)	845
Eco88I	CYCGRG	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	6 cut(s)	269, 388, 616, 745, 763, 866
EcoT14I	CCWWGG	3 cut(s)	282, 607, 640
EcoT38I	GRGCYC	1 cut(s)	624
ErhI	CCWWGG	3 cut(s)	282, 607, 640
FaeI	CATG	4 cut(s)	135, 473, 487, 629
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	4 cut(s)	131, 469, 483, 625
FauNDI	CATATG	2 cut(s)	355, 662
Fnu4HI	GCNGC	6 cut(s)	221, 224, 227, 252, 492, 891
FokI	GGATG	2 cut(s)	35, 599
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	6 cut(s)	221, 224, 227, 252, 492, 891
FspBI	CTAG	1 cut(s)	854
GlaI	GCGC	2 cut(s)	205, 207
GluI	GCNGC	6 cut(s)	221, 224, 227, 252, 492, 891
GsuI	CTGGAG	2 cut(s)	399, 781
HaeIII	GGCC	3 cut(s)	281, 287, 482
HgaI	GACGC	2 cut(s)	317, 858
HhaI	GCGC	2 cut(s)	206, 208
Hin1I	GRCGYC	1 cut(s)	850
Hin1II	CATG	4 cut(s)	135, 473, 487, 629
Hin6I	GCGC	2 cut(s)	204, 206
HinP1I	GCGC	2 cut(s)	204, 206
HinfI	GANTC	1 cut(s)	215
HphI	GGTGA	4 cut(s)	61, 169, 761, 841
Hpy188I	TCNGA	3 cut(s)	306, 420, 913
Hpy188III	TCNNGA	5 cut(s)	365, 442, 512, 676, 798
Hpy99I	CGWCG	2 cut(s)	111, 114
HpyAV	CCTTC	2 cut(s)	20, 820
HpyCH4III	ACNGT	1 cut(s)	884
HpyCH4IV	ACGT	2 cut(s)	106, 475
HpyCH4V	TGCA	4 cut(s)	123, 223, 473, 698
HpyF10VI	GCNNNNNNNGC	8 cut(s)	188, 203, 226, 293, 479, 488, 500, 863
HpyF3I	CTNAG	2 cut(s)	419, 912
HpySE526I	ACGT	2 cut(s)	106, 475
Hsp92I	GRCGYC	1 cut(s)	850
Hsp92II	CATG	4 cut(s)	135, 473, 487, 629
HspAI	GCGC	2 cut(s)	204, 206
Kzo9I	GATC	2 cut(s)	427, 781
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	4 cut(s)	306, 533, 627, 820
Lsp1109I	GCAGC	5 cut(s)	207, 235, 238, 478, 902
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	1 cut(s)	854
MaeII	ACGT	2 cut(s)	106, 475
MalI	GATC	2 cut(s)	429, 783
MboI	GATC	2 cut(s)	427, 781
MboII	GAAGA	3 cut(s)	256, 258, 335
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	624
MluCI	AATT	7 cut(s)	262, 348, 516, 648, 711, 735, 757
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	664
MnlI	CCTC	9 cut(s)	52, 63, 69, 101, 229, 234, 761, 803, 811
MseI	TTAA	3 cut(s)	276, 453, 756
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	226
MspR9I	CCNGG	6 cut(s)	271, 390, 618, 747, 765, 868
MvaI	CCWGG	6 cut(s)	271, 390, 618, 747, 765, 868
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	8 cut(s)	188, 203, 226, 293, 479, 488, 500, 863
NdeI	CATATG	2 cut(s)	355, 662
NdeII	GATC	2 cut(s)	427, 781
NlaIII	CATG	4 cut(s)	135, 473, 487, 629
NlaIV	GGNNCC	4 cut(s)	171, 429, 535, 623
NmeAIII	GCCGAG	1 cut(s)	143
OliI	CACNNNNGTG	1 cut(s)	182
PasI	CCCWGGG	1 cut(s)	617
PauI	GCGCGC	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	318
PflFI	GACNNNGTC	1 cut(s)	806
PkrI	GCNGC	6 cut(s)	222, 225, 228, 253, 493, 892
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PshBI	ATTAAT	1 cut(s)	756
Psp6I	CCWGG	6 cut(s)	269, 388, 616, 745, 763, 866
PspGI	CCWGG	6 cut(s)	269, 388, 616, 745, 763, 866
PspN4I	GGNNCC	4 cut(s)	171, 429, 535, 623
PspPI	GGNCC	4 cut(s)	286, 344, 480, 686
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	427
PsyI	GACNNNGTC	1 cut(s)	806
PteI	GCGCGC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	276, 453, 756
SatI	GCNGC	6 cut(s)	221, 224, 227, 252, 492, 891
Sau3AI	GATC	2 cut(s)	427, 781
Sau96I	GGNCC	4 cut(s)	286, 344, 480, 686
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	6 cut(s)	271, 390, 618, 747, 765, 868
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	1 cut(s)	221
SinI	GGWCC	2 cut(s)	344, 686
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	7 cut(s)	262, 348, 516, 648, 711, 735, 757
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	4 cut(s)	167, 180, 226, 254
SspMI	CTAG	1 cut(s)	854
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	6 cut(s)	269, 388, 616, 745, 763, 866
StyI	CCWWGG	3 cut(s)	282, 607, 640
TaaI	ACNGT	1 cut(s)	884
TaiI	ACGT	2 cut(s)	109, 478
TaqI	TCGA	1 cut(s)	298
TasI	AATT	7 cut(s)	262, 348, 516, 648, 711, 735, 757
TauI	GCSGC	1 cut(s)	229
Tru1I	TTAA	3 cut(s)	276, 453, 756
Tru9I	TTAA	3 cut(s)	276, 453, 756
TscAI	CASTG	1 cut(s)	735
TseI	GCWGC	5 cut(s)	220, 223, 251, 491, 890
TspDTI	ATGAA	2 cut(s)	37, 120
TspGWI	ACGGA	1 cut(s)	861
TspRI	CASTG	1 cut(s)	735
Tth111I	GACNNNGTC	1 cut(s)	806
VpaK11BI	GGWCC	2 cut(s)	344, 686
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	3 cut(s)	262, 516, 735
XspI	CTAG	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.