Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004485

Physical Location & Seq

Genomic Coordinates Reverse (-)

404568 .. 408672

Gene Structure 4105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G002700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCGCTGCTTCAGCCACGAGCTTCGCCTTGTTCAGTTTCCTCTTTCATTCATCATCCTCACTCTCTGGCTCTAAAATCCCCCACCAACCTCACATTTACTAAGCCTCGTTCTTCTGTTTGCAAAGCTTCATGGCAAGAGCTTGTGGGAGTTGTGGTGTTCTCGGCGATTCCATTCACGGCTGTGAAAGCCATAGCCAACAGCGCAGTCGGAGAGTCGCTGCAGAGGCGATTGGAGGAAAGGAAGAAAGTTGCAGTTGAGAATTCTTCCAGGTTTAGGGGCTTGGCCGAAAAGGCTCGAAAACAGAGCTTGTGGTATGGAGAAGAGCGTCCCCGCTGGCTTGGTCCAATTCCTTATGATTATCCTGCATATCTGACTGGAGAACTACCTGGGGATTATGGTTTTGATGTTGTAGGTCTGAGCAGGGATCCTGTGGCTTTCCAAAAATATTTTAACTTCGAAATACTCCATGCTCGTTGGGCCATGCTAGCAGCCCTTGGTGCCTTGATTCCTGAAATTTTGGACCTCTTAGGAGCCTTTCACTTTGTTGAACCTGTATGGTGGCGAGTTGGCTATTCAAAACTTAAGGGAGATACACTGGACTACCTAGGCATCCCGGGACTGCACGTAGCTGGAAGCCAAGGAGTGATTGTTATAGCCATATGCCAAGCCCTCCTGATGGTTGGACCAGAATATGCAAGATATTGTGGGATTGAAGCATTAGAGCCTCTGGGAATTTACCTTCCAGGTGATGTTAATTATCCAGGAGGAGAGCTTTTTGATCCCTTGAACCTCTCCCGAGACCCAGTAGCTTTTGAAGAGCTGAAGGTGAAAGAGATCAAAAATGGGCGGCTAGCGATGGTAGCCTGGTTAGGCTTCTACAGTCAAGCAGCATTGACAGGTAAAGGTCCTGTACAGAACCTCCTTGAACACATTTCTGATCCCCTACACAACAACGTGCTTTCAGTACTCAAATTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

328

Amino Acids

36.16

Weight (kDa)

7.7

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76570
fragaria_vesca	FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480
malus_domestica	MD06G1001700.v1.1
prunus_persica	Prupe.5G002700_v2.0.a1 Prupe.5G002700_v2.0.a1
pyrus_communis	pycom06g00180
rosa_chinensis	RchiOBHm_Chr7g0217391
rosa_laevigata	RLG00000002481
rosa_multiflora	Rmu_co8208352.1_g000001 Rmu_sc0000145.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242130 Rroxscaffold_3G00242220
rosa_rugosa	Rorug07G0168700 Rorug07G0168800
rosa_samantha	Rh7AG308400 Rh7BG299100 Rh7CG327700 Rh7DG307700
rosa_wichuraiana	Rw7G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AciI	CCGC	2 cut(s)	334, 850
AclWI	GGATC	4 cut(s)	422, 435, 776, 935
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	4 cut(s)	262, 516, 735, 974
AcuI	CTGAAG	1 cut(s)	845
AfaI	GTAC	2 cut(s)	915, 969
AfiI	CCNNNNNNNGG	2 cut(s)	276, 679
AflII	CTTAAG	1 cut(s)	584
AgsI	TTSAA	6 cut(s)	551, 579, 716, 790, 818, 929
AjnI	CCWGG	5 cut(s)	269, 388, 745, 763, 866
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	8 cut(s)	23, 128, 142, 309, 632, 775, 812, 823
AluI	AGCT	8 cut(s)	23, 128, 142, 309, 632, 775, 812, 823
Alw26I	GTCTC	1 cut(s)	795
AlwI	GGATC	4 cut(s)	422, 435, 776, 935
Ama87I	CYCGRG	2 cut(s)	616, 798
AoxI	GGCC	2 cut(s)	285, 480
ApeKI	GCWGC	4 cut(s)	7, 220, 491, 890
ApoI	RAATTY	4 cut(s)	262, 516, 735, 974
AspA2I	CCTAGG	1 cut(s)	607
AspLEI	GCGC	2 cut(s)	7, 206
AspS9I	GGNCC	5 cut(s)	344, 480, 523, 686, 908
AsuC2I	CCSGG	2 cut(s)	617, 618
AsuHPI	GGTGA	2 cut(s)	761, 841
AsuII	TTCGAA	1 cut(s)	459
AsuNHI	GCTAGC	2 cut(s)	487, 853
AvaI	CYCGRG	2 cut(s)	616, 798
AvaII	GGWCC	4 cut(s)	344, 523, 686, 908
AvrII	CCTAGG	1 cut(s)	607
BamHI	GGATCC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	500
BauI	CACGAG	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	207, 503, 902
BccI	CCATC	2 cut(s)	673, 853
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	5 cut(s)	271, 390, 747, 765, 868
BcnI	CCSGG	2 cut(s)	617, 618
BcoDI	GTCTC	1 cut(s)	795
BfaI	CTAG	3 cut(s)	488, 608, 854
BfmI	CTRYAG	2 cut(s)	221, 880
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	5 cut(s)	8, 221, 492, 851, 891
BlnI	CCTAGG	1 cut(s)	607
BlsI	GCNGC	5 cut(s)	9, 222, 493, 852, 892
BmcAI	AGTACT	1 cut(s)	969
Bme1390I	CCNGG	7 cut(s)	271, 390, 617, 618, 747, 765, 868
Bme18I	GGWCC	4 cut(s)	344, 523, 686, 908
BmeT110I	CYCGRG	2 cut(s)	616, 798
BmgT120I	GGNCC	5 cut(s)	344, 480, 523, 686, 908
BmiI	GGNNCC	3 cut(s)	429, 502, 535
BmrFI	CCNGG	7 cut(s)	271, 390, 617, 618, 747, 765, 868
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	1 cut(s)	621
BmtI	GCTAGC	2 cut(s)	491, 857
BmuI	ACTGGG	1 cut(s)	800
BpmI	CTGGAG	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	459
BpuMI	CCSGG	2 cut(s)	617, 618
BsaAI	YACGTR	1 cut(s)	628
BsaI	GGTCTC	1 cut(s)	795
BsaJI	CCNNGG	5 cut(s)	389, 496, 607, 616, 640
BsaXI	ACNNNNNCTCC	6 cut(s)	141, 171, 636, 666, 906, 936
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 679
Bse1I	ACTGG	3 cut(s)	382, 603, 806
BseBI	CCWGG	5 cut(s)	271, 390, 747, 765, 868
BseDI	CCNNGG	5 cut(s)	389, 496, 607, 616, 640
BseGI	GGATG	2 cut(s)	55, 612
BseLI	CCNNNNNNNGG	2 cut(s)	276, 679
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	3 cut(s)	382, 603, 806
BseRI	GAGGAG	1 cut(s)	783
BseXI	GCAGC	3 cut(s)	207, 503, 902
BsgI	GTGCAG	1 cut(s)	608
BshFI	GGCC	2 cut(s)	287, 482
BshNI	GGYRCC	1 cut(s)	500
BsiHKCI	CYCGRG	2 cut(s)	616, 798
BsiSI	CCGG	1 cut(s)	617
BslFI	GGGAC	2 cut(s)	315, 633
BslI	CCNNNNNNNGG	2 cut(s)	276, 679
BsmAI	GTCTC	1 cut(s)	795
BsmFI	GGGAC	2 cut(s)	315, 633
BsnI	GGCC	2 cut(s)	287, 482
Bso31I	GGTCTC	1 cut(s)	795
BsoBI	CYCGRG	2 cut(s)	616, 798
Bsp119I	TTCGAA	1 cut(s)	459
Bsp1407I	TGTACA	1 cut(s)	913
Bsp143I	GATC	4 cut(s)	427, 781, 837, 940
BspACI	CCGC	2 cut(s)	334, 850
BspANI	GGCC	2 cut(s)	287, 482
BspCNI	CTCAG	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	429, 502, 535
BspMAI	CTGCAG	1 cut(s)	225
BspOI	GCTAGC	2 cut(s)	491, 857
BspPI	GGATC	4 cut(s)	422, 435, 776, 935
BspQI	GCTCTTC	2 cut(s)	318, 813
BspT104I	TTCGAA	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	500
BspTI	CTTAAG	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	795
BsrGI	TGTACA	1 cut(s)	913
BsrI	ACTGG	3 cut(s)	382, 603, 806
BssECI	CCNNGG	5 cut(s)	389, 496, 607, 616, 640
BssMI	GATC	4 cut(s)	427, 781, 837, 940
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	3 cut(s)	496, 607, 640
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	5 cut(s)	271, 390, 747, 765, 868
Bst4CI	ACNGT	1 cut(s)	884
Bst6I	CTCTTC	2 cut(s)	318, 813
BstAFI	CTTAAG	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	913
BstBAI	YACGTR	1 cut(s)	628
BstBI	TTCGAA	1 cut(s)	459
BstC8I	GCNNGC	3 cut(s)	338, 489, 855
BstDEI	CTNAG	3 cut(s)	102, 419, 529
BstF5I	GGATG	2 cut(s)	55, 612
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 206
BstKTI	GATC	4 cut(s)	430, 784, 840, 943
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	4 cut(s)	427, 781, 837, 940
BstMWI	GCNNNNNNNGC	9 cut(s)	13, 188, 203, 226, 293, 479, 488, 500, 863
BstNI	CCWGG	5 cut(s)	271, 390, 747, 765, 868
BstSCI	CCNGG	7 cut(s)	269, 388, 615, 616, 745, 763, 866
BstSFI	CTRYAG	2 cut(s)	221, 880
BstV1I	GCAGC	3 cut(s)	207, 503, 902
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	287, 482
BtgZI	GCGATG	1 cut(s)	872
BtsCI	GGATG	2 cut(s)	55, 612
BtsIMutI	CAGTG	1 cut(s)	596
Cac8I	GCNNGC	3 cut(s)	338, 489, 855
CfoI	GCGC	2 cut(s)	7, 206
Cfr13I	GGNCC	5 cut(s)	344, 480, 523, 686, 908
Cfr9I	CCCGGG	1 cut(s)	616
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	914, 968
CviAII	CATG	3 cut(s)	132, 470, 484
CviQI	GTAC	2 cut(s)	914, 968
DdeI	CTNAG	3 cut(s)	102, 419, 529
DpnI	GATC	4 cut(s)	429, 783, 839, 942
DpnII	GATC	4 cut(s)	427, 781, 837, 940
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	318, 813
EarI	CTCTTC	2 cut(s)	318, 813
Eco130I	CCWWGG	3 cut(s)	496, 607, 640
Eco31I	GGTCTC	1 cut(s)	795
Eco47I	GGWCC	4 cut(s)	344, 523, 686, 908
Eco57I	CTGAAG	1 cut(s)	845
Eco88I	CYCGRG	2 cut(s)	616, 798
EcoO109I	RGGNCCY	1 cut(s)	908
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	5 cut(s)	269, 388, 745, 763, 866
EcoT14I	CCWWGG	3 cut(s)	496, 607, 640
ErhI	CCWWGG	3 cut(s)	496, 607, 640
FaeI	CATG	3 cut(s)	135, 473, 487
FaqI	GGGAC	2 cut(s)	315, 633
FatI	CATG	3 cut(s)	131, 469, 483
FauI	CCCGC	1 cut(s)	341
FauNDI	CATATG	1 cut(s)	662
Fnu4HI	GCNGC	5 cut(s)	8, 221, 492, 851, 891
FokI	GGATG	2 cut(s)	42, 599
Fsp4HI	GCNGC	5 cut(s)	8, 221, 492, 851, 891
FspBI	CTAG	3 cut(s)	488, 608, 854
GlaI	GCGC	2 cut(s)	6, 205
GluI	GCNGC	5 cut(s)	8, 221, 492, 851, 891
GsuI	CTGGAG	1 cut(s)	399
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	287, 482
HapII	CCGG	1 cut(s)	617
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	2 cut(s)	7, 206
Hin1II	CATG	3 cut(s)	135, 473, 487
Hin6I	GCGC	2 cut(s)	5, 204
HinP1I	GCGC	2 cut(s)	5, 204
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	3 cut(s)	169, 215, 508
HpaII	CCGG	1 cut(s)	617
HphI	GGTGA	2 cut(s)	761, 841
Hpy188I	TCNGA	4 cut(s)	212, 375, 420, 940
Hpy188III	TCNNGA	3 cut(s)	512, 676, 798
HpyAV	CCTTC	2 cut(s)	752, 820
HpyCH4III	ACNGT	1 cut(s)	884
HpyCH4IV	ACGT	2 cut(s)	627, 957
HpyCH4V	TGCA	6 cut(s)	123, 223, 254, 368, 625, 698
HpyF10VI	GCNNNNNNNGC	9 cut(s)	13, 188, 203, 226, 293, 479, 488, 500, 863
HpyF3I	CTNAG	3 cut(s)	102, 419, 529
HpySE526I	ACGT	2 cut(s)	627, 957
Hsp92II	CATG	3 cut(s)	135, 473, 487
HspAI	GCGC	2 cut(s)	5, 204
Kzo9I	GATC	4 cut(s)	427, 781, 837, 940
LguI	GCTCTTC	2 cut(s)	318, 813
LmnI	GCTCC	1 cut(s)	533
Lsp1109I	GCAGC	3 cut(s)	207, 503, 902
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	3 cut(s)	488, 608, 854
MaeII	ACGT	2 cut(s)	627, 957
MalI	GATC	4 cut(s)	429, 783, 839, 942
MboI	GATC	4 cut(s)	427, 781, 837, 940
MboII	GAAGA	5 cut(s)	105, 256, 258, 335, 830
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	6 cut(s)	262, 348, 516, 735, 757, 974
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	2 cut(s)	190, 664
MseI	TTAA	3 cut(s)	453, 585, 756
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	336
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	1 cut(s)	617
MspR9I	CCNGG	7 cut(s)	271, 390, 617, 618, 747, 765, 868
MvaI	CCWGG	5 cut(s)	271, 390, 747, 765, 868
MwoI	GCNNNNNNNGC	9 cut(s)	13, 188, 203, 226, 293, 479, 488, 500, 863
NciI	CCSGG	2 cut(s)	617, 618
NdeI	CATATG	1 cut(s)	662
NdeII	GATC	4 cut(s)	427, 781, 837, 940
NheI	GCTAGC	2 cut(s)	487, 853
NlaIII	CATG	3 cut(s)	135, 473, 487
NlaIV	GGNNCC	3 cut(s)	429, 502, 535
NmeAIII	GCCGAG	1 cut(s)	143
NspV	TTCGAA	1 cut(s)	459
OliI	CACNNNNGTG	1 cut(s)	182
PciSI	GCTCTTC	2 cut(s)	318, 813
PfeI	GAWTC	2 cut(s)	169, 508
PfoI	TCCNGGA	1 cut(s)	763
PkrI	GCNGC	5 cut(s)	9, 222, 493, 852, 892
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Ppu21I	YACGTR	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	908
Psp5II	RGGWCCY	1 cut(s)	908
Psp6I	CCWGG	5 cut(s)	269, 388, 745, 763, 866
PspGI	CCWGG	5 cut(s)	269, 388, 745, 763, 866
PspN4I	GGNNCC	3 cut(s)	429, 502, 535
PspPI	GGNCC	5 cut(s)	344, 480, 523, 686, 908
PspPPI	RGGWCCY	1 cut(s)	908
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	2 cut(s)	915, 969
RsaNI	GTAC	2 cut(s)	914, 968
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	2 cut(s)	318, 813
SaqAI	TTAA	3 cut(s)	453, 585, 756
SatI	GCNGC	5 cut(s)	8, 221, 492, 851, 891
Sau3AI	GATC	4 cut(s)	427, 781, 837, 940
Sau96I	GGNCC	5 cut(s)	344, 480, 523, 686, 908
ScaI	AGTACT	1 cut(s)	969
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	7 cut(s)	271, 390, 617, 618, 747, 765, 868
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	2 cut(s)	221, 880
SfuI	TTCGAA	1 cut(s)	459
SinI	GGWCC	4 cut(s)	344, 523, 686, 908
SmaI	CCCGGG	1 cut(s)	618
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	6 cut(s)	262, 348, 516, 735, 757, 974
SsiI	CCGC	2 cut(s)	334, 850
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	3 cut(s)	488, 608, 854
StyD4I	CCNGG	7 cut(s)	269, 388, 615, 616, 745, 763, 866
StyI	CCWWGG	3 cut(s)	496, 607, 640
TaaI	ACNGT	1 cut(s)	884
TaiI	ACGT	2 cut(s)	630, 960
TaqI	TCGA	2 cut(s)	298, 459
TasI	AATT	6 cut(s)	262, 348, 516, 735, 757, 974
TatI	WGTACW	2 cut(s)	913, 967
TauI	GCSGC	1 cut(s)	853
TfiI	GAWTC	2 cut(s)	169, 508
Tru1I	TTAA	3 cut(s)	453, 585, 756
Tru9I	TTAA	3 cut(s)	453, 585, 756
TscAI	CASTG	1 cut(s)	603
TseI	GCWGC	4 cut(s)	7, 220, 491, 890
TspDTI	ATGAA	3 cut(s)	37, 41, 120
TspMI	CCCGGG	1 cut(s)	616
TspRI	CASTG	1 cut(s)	603
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	4 cut(s)	344, 523, 686, 908
XapI	RAATTY	4 cut(s)	262, 516, 735, 974
XmaI	CCCGGG	1 cut(s)	616
XmaJI	CCTAGG	1 cut(s)	607
XspI	CTAG	3 cut(s)	488, 608, 854
ZrmI	AGTACT	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.