Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004485

Physical Location & Seq

Genomic Coordinates Forward (+)

35939558 .. 35945475

Gene Structure 5918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG307700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCTCTCCTTCCACCACCAGCTTCGCCTTCCTCCCTTGCTTCTTTCATTCCTCGTCCTCCATCTCTCGCCCTAAAATCCACAACCAACCTCACATTTCCCAAACGTCGTCGTTCCGTATGCACAGCTTCATGGCAAGAGCTTGTCGGAGTTGTGGTATTCTCGGCGATTCCATTCACCGCCGTGAAAGCCATAGCCAATAGCGCTCTCGGAGAGTCACTGCAGCGGCGATTGGAAGAAAGGAAGAAAGTTGCGGTTGAGAATTCTTCCAGGTTCAGGGCCTTGGCCCAAAATGCTCGAAATCGGAGCTTGTGGTATGGAGAAGAGCGCCCCCGCTGGCTTGGTCCTATCCCATATGATTATCCGGCATATCTTACTGGAGAACTACCTGGGGATTATGGTTTTGATGTTGTAGGTCTGAGCAAGGATCCAGTGGCTTTCCAAAGATATTTTAACTTTGAAATACTCCATGCGCGTTGGGCCATGCTAGCTGCCTTTGGTGCTTTGGTTCCAGAAATTTTAGACCTGTTAGGAGCCTTTCACTTTGTTGAGCCTGTATGGTGGCGAGTTGGCTATTCAAAGCTTAAGGTTAGTACTTTCTGTGTTGGAATTAACTTTTGTTTAGTAATCAATTTTTCTCTGTGGGAATTTGGTTTGCCATGTCATTCCTTTTCCTGTGAAATCAATACCATAGATCTTCTCAATAAAGTGAAGACCATTCAACTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

243

Amino Acids

27.3

Weight (kDa)

9.28

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	122 - 209	3e-21	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76570
fragaria_vesca	FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480
malus_domestica	MD06G1001700.v1.1
prunus_persica	Prupe.5G002700_v2.0.a1 Prupe.5G002700_v2.0.a1
pyrus_communis	pycom06g00180
rosa_chinensis	RchiOBHm_Chr7g0217391
rosa_laevigata	RLG00000002481
rosa_multiflora	Rmu_co8208352.1_g000001 Rmu_sc0000145.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242130 Rroxscaffold_3G00242220
rosa_rugosa	Rorug07G0168700 Rorug07G0168800
rosa_samantha	Rh7AG308400 Rh7BG299100 Rh7CG327700 Rh7DG307700
rosa_wichuraiana	Rw7G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	475
AciI	CCGC	4 cut(s)	180, 226, 254, 334
AclWI	GGATC	2 cut(s)	422, 435
AcsI	RAATTY	3 cut(s)	262, 516, 647
AfaI	GTAC	1 cut(s)	595
AfeI	AGCGCT	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	276
AflII	CTTAAG	1 cut(s)	584
AgsI	TTSAA	3 cut(s)	461, 579, 722
AjnI	CCWGG	2 cut(s)	269, 388
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	6 cut(s)	23, 128, 142, 309, 491, 583
AluI	AGCT	6 cut(s)	23, 128, 142, 309, 491, 583
AlwI	GGATC	2 cut(s)	422, 435
Aor51HI	AGCGCT	1 cut(s)	205
AoxI	GGCC	3 cut(s)	279, 285, 480
ApeKI	GCWGC	2 cut(s)	223, 491
ApoI	RAATTY	3 cut(s)	262, 516, 647
AspLEI	GCGC	3 cut(s)	206, 330, 475
AspS9I	GGNCC	4 cut(s)	279, 286, 344, 480
AsuHPI	GGTGA	1 cut(s)	169
AsuNHI	GCTAGC	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	719
BbvI	GCAGC	2 cut(s)	235, 478
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	271, 390
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	221
BfoI	RGCGCY	2 cut(s)	207, 331
BfrI	CTTAAG	1 cut(s)	584
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	3 cut(s)	224, 227, 492
BlsI	GCNGC	3 cut(s)	225, 228, 493
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	2 cut(s)	271, 390
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	4 cut(s)	279, 286, 344, 480
BmiI	GGNNCC	3 cut(s)	429, 510, 535
BmrFI	CCNGG	2 cut(s)	271, 390
BmtI	GCTAGC	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	719
BpmI	CTGGAG	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	282, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	382, 431
BseBI	CCWGG	2 cut(s)	271, 390
BseDI	CCNNGG	2 cut(s)	282, 389
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	2 cut(s)	382, 431
BseXI	GCAGC	2 cut(s)	235, 478
Bsh1236I	CGCG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	281, 287, 482
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	276
BsnI	GGCC	3 cut(s)	281, 287, 482
Bsp143I	GATC	2 cut(s)	427, 694
BspACI	CCGC	4 cut(s)	180, 226, 254, 334
BspANI	GGCC	3 cut(s)	281, 287, 482
BspCNI	CTCAG	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	475
BspLI	GGNNCC	3 cut(s)	429, 510, 535
BspMAI	CTGCAG	1 cut(s)	225
BspOI	GCTAGC	1 cut(s)	491
BspPI	GGATC	2 cut(s)	422, 435
BspQI	GCTCTTC	1 cut(s)	318
BspTI	CTTAAG	1 cut(s)	584
BsrI	ACTGG	2 cut(s)	382, 431
BssECI	CCNNGG	2 cut(s)	282, 389
BssMI	GATC	2 cut(s)	427, 694
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	271, 390
Bst6I	CTCTTC	1 cut(s)	318
BstAFI	CTTAAG	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	338, 489
BstDEI	CTNAG	1 cut(s)	419
BstFNI	CGCG	1 cut(s)	475
BstH2I	RGCGCY	2 cut(s)	207, 331
BstHHI	GCGC	3 cut(s)	206, 330, 475
BstKTI	GATC	2 cut(s)	430, 697
BstMBI	GATC	2 cut(s)	427, 694
BstMWI	GCNNNNNNNGC	6 cut(s)	188, 203, 293, 479, 488, 500
BstNI	CCWGG	2 cut(s)	271, 390
BstSCI	CCNGG	2 cut(s)	269, 388
BstSFI	CTRYAG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	2 cut(s)	235, 478
BstV2I	GAAGAC	1 cut(s)	719
BstX2I	RGATCY	2 cut(s)	427, 694
BstYI	RGATCY	2 cut(s)	427, 694
BsuRI	GGCC	3 cut(s)	281, 287, 482
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	2 cut(s)	218, 438
Cac8I	GCNNGC	2 cut(s)	338, 489
CfoI	GCGC	3 cut(s)	206, 330, 475
Cfr13I	GGNCC	4 cut(s)	279, 286, 344, 480
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	4 cut(s)	132, 470, 484, 660
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	2 cut(s)	429, 696
DpnII	GATC	2 cut(s)	427, 694
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	344
Eco47III	AGCGCT	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	269, 388
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	4 cut(s)	135, 473, 487, 663
FatI	CATG	4 cut(s)	131, 469, 483, 659
FauI	CCCGC	1 cut(s)	341
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	224, 227, 492
Fsp4HI	GCNGC	3 cut(s)	224, 227, 492
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	3 cut(s)	205, 329, 474
GluI	GCNGC	3 cut(s)	224, 227, 492
GsuI	CTGGAG	1 cut(s)	399
HaeII	RGCGCY	2 cut(s)	207, 331
HaeIII	GGCC	3 cut(s)	281, 287, 482
HapII	CCGG	1 cut(s)	365
HhaI	GCGC	3 cut(s)	206, 330, 475
Hin1II	CATG	4 cut(s)	135, 473, 487, 663
Hin6I	GCGC	3 cut(s)	204, 328, 473
HinP1I	GCGC	3 cut(s)	204, 328, 473
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	2 cut(s)	169, 215
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	4 cut(s)	149, 212, 306, 420
Hpy188III	TCNNGA	1 cut(s)	512
Hpy99I	CGWCG	2 cut(s)	111, 114
HpyAV	CCTTC	2 cut(s)	20, 39
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	123, 223
HpyF10VI	GCNNNNNNNGC	6 cut(s)	188, 203, 293, 479, 488, 500
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	4 cut(s)	135, 473, 487, 663
HspAI	GCGC	3 cut(s)	204, 328, 473
Kzo9I	GATC	2 cut(s)	427, 694
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	306, 533
Lsp1109I	GCAGC	2 cut(s)	235, 478
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	2 cut(s)	429, 696
MboI	GATC	2 cut(s)	427, 694
MboII	GAAGA	6 cut(s)	248, 256, 258, 335, 689, 724
MflI	RGATCY	2 cut(s)	427, 694
MluCI	AATT	5 cut(s)	262, 516, 609, 631, 647
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	2 cut(s)	127, 586
MnlI	CCTC	4 cut(s)	43, 63, 69, 101
MseI	TTAA	3 cut(s)	453, 585, 612
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	2 cut(s)	226, 336
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	2 cut(s)	271, 390
MvaI	CCWGG	2 cut(s)	271, 390
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	6 cut(s)	188, 203, 293, 479, 488, 500
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	2 cut(s)	427, 694
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	4 cut(s)	135, 473, 487, 663
NlaIV	GGNNCC	3 cut(s)	429, 510, 535
NmeAIII	GCCGAG	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	216
OliI	CACNNNNGTG	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	225, 228, 493
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	269, 388
PspGI	CCWGG	2 cut(s)	269, 388
PspN4I	GGNNCC	3 cut(s)	429, 510, 535
PspPI	GGNCC	4 cut(s)	279, 286, 344, 480
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	2 cut(s)	427, 694
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	453, 585, 612
SatI	GCNGC	3 cut(s)	224, 227, 492
Sau3AI	GATC	2 cut(s)	427, 694
Sau96I	GGNCC	4 cut(s)	279, 286, 344, 480
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	271, 390
SfcI	CTRYAG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	5 cut(s)	262, 516, 609, 631, 647
SsiI	CCGC	4 cut(s)	180, 226, 254, 334
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	2 cut(s)	269, 388
StyI	CCWWGG	1 cut(s)	282
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	298
TasI	AATT	5 cut(s)	262, 516, 609, 631, 647
TatI	WGTACW	1 cut(s)	593
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	3 cut(s)	453, 585, 612
Tru9I	TTAA	3 cut(s)	453, 585, 612
TscAI	CASTG	2 cut(s)	225, 438
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	2 cut(s)	223, 491
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	2 cut(s)	37, 120
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	225, 438
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	3 cut(s)	262, 516, 647
XspI	CTAG	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.