Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8208352.1

Orthogroup ID

OG0004485

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 641

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8208352.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 308 bp

atggctctccttccaccaccagcttcgccttcctcccttgcttctttcattcctcgtcctccatctctcgccctaaaatccacaaccaacctcacatttcccaaacgtcgtcgttccgtatgcacagcttcatggcaagagcttgtcggagttgtggtattctcggcgattccattcaccgccgtgaaagccatagccaatagcgctctcggagagtcgctgcagcggcgattggaagaaaggaagaaagttgcggttgagaattcttccaggttcagggccttggcccaaaatgctcgaaatcggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

102

Amino Acids

11.13

Weight (kDa)

11.77

Isoelectric Point (pI)

73.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76570
fragaria_vesca	FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480
malus_domestica	MD06G1001700.v1.1
prunus_persica	Prupe.5G002700_v2.0.a1 Prupe.5G002700_v2.0.a1
pyrus_communis	pycom06g00180
rosa_chinensis	RchiOBHm_Chr7g0217391
rosa_laevigata	RLG00000002481
rosa_multiflora	Rmu_co8208352.1_g000001 Rmu_sc0000145.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242130 Rroxscaffold_3G00242220
rosa_rugosa	Rorug07G0168700 Rorug07G0168800
rosa_samantha	Rh7AG308400 Rh7BG299100 Rh7CG327700 Rh7DG307700
rosa_wichuraiana	Rw7G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	180, 226, 254
AcsI	RAATTY	1 cut(s)	262
AfeI	AGCGCT	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	276
AjnI	CCWGG	1 cut(s)	269
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	3 cut(s)	23, 128, 142
AluI	AGCT	3 cut(s)	23, 128, 142
Aor51HI	AGCGCT	1 cut(s)	205
AoxI	GGCC	2 cut(s)	279, 285
ApeKI	GCWGC	2 cut(s)	220, 223
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	279, 286
AsuHPI	GGTGA	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	207, 235
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	271
BfmI	CTRYAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	3 cut(s)	221, 224, 227
BlsI	GCNGC	3 cut(s)	222, 225, 228
Bme1390I	CCNGG	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	279, 286
BmrFI	CCNGG	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	207, 235
BshFI	GGCC	2 cut(s)	281, 287
BslI	CCNNNNNNNGG	1 cut(s)	276
BsnI	GGCC	2 cut(s)	281, 287
BspACI	CCGC	3 cut(s)	180, 226, 254
BspANI	GGCC	2 cut(s)	281, 287
BspMAI	CTGCAG	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 203, 226, 293
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	207, 235
BsuRI	GGCC	2 cut(s)	281, 287
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	279, 286
CviAII	CATG	1 cut(s)	132
CviJI	RGCY	8 cut(s)	5, 23, 128, 142, 191, 197, 281, 287
CviKI_1	RGCY	8 cut(s)	5, 23, 128, 142, 191, 197, 281, 287
Eco130I	CCWWGG	1 cut(s)	282
Eco47III	AGCGCT	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	135
FaiI	YATR	3 cut(s)	121, 133, 194
FatI	CATG	1 cut(s)	131
Fnu4HI	GCNGC	3 cut(s)	221, 224, 227
Fsp4HI	GCNGC	3 cut(s)	221, 224, 227
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	3 cut(s)	221, 224, 227
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	281, 287
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	135
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	2 cut(s)	169, 215
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	149, 212, 306
Hpy99I	CGWCG	2 cut(s)	111, 114
HpyAV	CCTTC	2 cut(s)	20, 39
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	123, 223
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 203, 226, 293
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	135
HspAI	GCGC	1 cut(s)	204
LpnPI	CCDG	4 cut(s)	33, 256, 262, 283
Lsp1109I	GCAGC	2 cut(s)	207, 235
MaeII	ACGT	1 cut(s)	106
MboII	GAAGA	3 cut(s)	248, 256, 258
MluCI	AATT	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	4 cut(s)	43, 63, 69, 101
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	4 cut(s)	188, 203, 226, 293
NlaIII	CATG	1 cut(s)	135
NmeAIII	GCCGAG	1 cut(s)	143
OliI	CACNNNNGTG	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	222, 225, 228
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	279, 286
PstI	CTGCAG	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	182
SatI	GCNGC	3 cut(s)	221, 224, 227
Sau96I	GGNCC	2 cut(s)	279, 286
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	6 cut(s)	25, 93, 109, 130, 144, 275
SfcI	CTRYAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	3 cut(s)	180, 226, 254
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	282
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	298
TasI	AATT	1 cut(s)	262
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	220, 223
TspDTI	ATGAA	2 cut(s)	37, 120
TspGWI	ACGGA	1 cut(s)	106
XapI	RAATTY	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.