MD06G1001700.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
212350 .. 217034
4685 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1001700.v1.1.491

Sequence Viewer

Length: 1053 bp
ATGATTAAGAGCAGCAGCATGGGAATGGCTGTTCTGGGAGGAGGACTCGGAGGAGCTTGGCCGCGGCCATGTTCAGCTTACTCCTCTTTCTTTGGGCATCCTCCGTCTCTTCCCCCCCTAAACCTCAAGCTCAAATCCCCAAACAACCAAAAGTCTCCTCCTCCTCCTCCTCCTCCTCGTTTTGGTGTCTGCAAAGCTTCATGGCAAGAGCTTGTGGGAGTTGTGGTATTCTCTGCCATTCCATTCACGGCCGTGAAAGCCATAGCCAATAGCGCACTCGGACAGTCTCTGCAGAAGCGGTTGGAGGAAAGGAAGAAACTTGCTGTGGAGAATTCTTCCACCTTTAGGGCCTCCGCCCAAATCGCACGAAAACGCAGCTTGTGGTACGGAGAAGGGCGTCCCCGCTGGCTTGGCCCAATTCCATATGATTATCCTGCATATCTTACTGGAGAACTACCTGGGGATTATGGTTTTGATGTTATAGGTCTGAGCAAGGATCCTGTTGCTTTCCAAAAGTATTTTAACTTTGAAATACTCCATGCTCGTTGGGCTATGCTAGCTGCCCTTGGTGCTTTGGTTCCTGAAATATTAGATCTCTTAGGAGCCTTTCATTTTGTTGAGCCAGTATGGTGGCGAGTTGGCTATTCAAAACTTAAGGGAGACACACTAGACTACCTTGGTATCCCGGGGCTCCATGTAGCAGGAAGCCAAGGAGTGATTGTCATAGCCATATGCCAAGTTCTCCTGATGGTTGGACCTGAATATGCAAGGTATTGTGGGATTGAAGCATTAGAGCCTTTGGGAATATACCTGCCAGGCGATGTTAATTACCCGGGAGGAGAGCTTTTTGATCCCTTGAACCTCGCCAAAGACCCCGTAGCCTTTGAGGAGCTGAAGGTGAAGGAGATAAAAAATGGGCGCCTAGCTATGGTGGCCTGGTTAGGCTTCTACAGTCAAGCTGCATTGACAGGTAAAGGTCCTGTTCACAACTTGCTTGAACACATTTCAGACCCCTTACACAATAATGTGTTTACACTACTCAAATCAATGTAA

Protein Analysis

351

Amino Acids

38.2

Weight (kDa)

8.87

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 145 - 320 4.4e-43 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 819
AccB1I GGYRCC 1 cut(s) 918
AccII CGCG 1 cut(s) 64
AciI CCGC 5 cut(s) 62, 64, 298, 354, 403
AclWI GGATC 3 cut(s) 491, 504, 845
AcoI YGGCCR 3 cut(s) 59, 65, 249
AcsI RAATTY 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 914
AcyI GRCGYC 2 cut(s) 397, 919
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 3 cut(s) 182, 345, 928
AflII CTTAAG 1 cut(s) 653
AgsI TTSAA 5 cut(s) 530, 648, 785, 859, 998
AjnI CCWGG 3 cut(s) 457, 814, 935
AleI CACNNNNGTG 1 cut(s) 251
AloI GAACNNNNNNTCC 2 cut(s) 15, 47
Alw26I GTCTC 4 cut(s) 111, 159, 291, 654
AlwI GGATC 3 cut(s) 491, 504, 845
AlwNI CAGNNNCTG 1 cut(s) 289
Ama87I CYCGRG 2 cut(s) 685, 832
AoxI GGCC 6 cut(s) 59, 65, 249, 348, 412, 933
ApeKI GCWGC 5 cut(s) 12, 15, 375, 560, 959
ApoI RAATTY 1 cut(s) 331
AspLEI GCGC 2 cut(s) 275, 921
AspS9I GGNCC 4 cut(s) 348, 413, 755, 977
AsuC2I CCSGG 4 cut(s) 686, 687, 833, 834
AsuHPI GGTGA 1 cut(s) 910
AsuNHI GCTAGC 1 cut(s) 556
AvaI CYCGRG 2 cut(s) 685, 832
AvaII GGWCC 2 cut(s) 755, 977
BaeI ACNNNNGTAYC 2 cut(s) 664, 697
BamHI GGATCC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 918
BanII GRGCYC 1 cut(s) 693
BbvI GCAGC 5 cut(s) 24, 27, 387, 547, 946
BccI CCATC 1 cut(s) 742
BceAI ACGGC 2 cut(s) 236, 264
BciT130I CCWGG 3 cut(s) 459, 816, 937
BciVI GTATCC 1 cut(s) 692
BcnI CCSGG 4 cut(s) 686, 687, 833, 834
BcoDI GTCTC 4 cut(s) 111, 159, 291, 654
BfaI CTAG 3 cut(s) 557, 668, 923
BfmI CTRYAG 2 cut(s) 290, 949
BfoI RGCGCY 1 cut(s) 922
BfrI CTTAAG 1 cut(s) 653
BfuAI ACCTGC 1 cut(s) 819
BfuI GTATCC 1 cut(s) 692
BglII AGATCT 1 cut(s) 592
BisI GCNGC 7 cut(s) 13, 16, 62, 65, 376, 561, 960
BlsI GCNGC 7 cut(s) 14, 17, 63, 66, 377, 562, 961
Bme1390I CCNGG 7 cut(s) 459, 686, 687, 816, 833, 834, 937
Bme18I GGWCC 2 cut(s) 755, 977
BmeT110I CYCGRG 2 cut(s) 685, 832
BmgT120I GGNCC 4 cut(s) 348, 413, 755, 977
BmiI GGNNCC 5 cut(s) 498, 579, 604, 692, 920
BmrFI CCNGG 7 cut(s) 459, 686, 687, 816, 833, 834, 937
BmsI GCATC 1 cut(s) 106
BmtI GCTAGC 1 cut(s) 560
BplI GAGNNNNNCTC 2 cut(s) 30, 62
BpmI CTGGAG 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 4 cut(s) 686, 687, 833, 834
BsaHI GRCGYC 2 cut(s) 397, 919
BsaJI CCNNGG 8 cut(s) 62, 458, 565, 676, 685, 686, 709, 832
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 705, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 345, 928
Bse1I ACTGG 2 cut(s) 451, 623
BseBI CCWGG 3 cut(s) 459, 816, 937
BseDI CCNNGG 8 cut(s) 62, 458, 565, 676, 685, 686, 709, 832
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 3 cut(s) 182, 345, 928
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 2 cut(s) 451, 623
BseX3I CGGCCG 1 cut(s) 249
BseXI GCAGC 5 cut(s) 24, 27, 387, 547, 946
Bsh1236I CGCG 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 6 cut(s) 61, 67, 251, 350, 414, 935
BshNI GGYRCC 1 cut(s) 918
BsiEI CGRYCG 1 cut(s) 252
BsiHKCI CYCGRG 2 cut(s) 685, 832
BsiSI CCGG 2 cut(s) 686, 833
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 3 cut(s) 182, 345, 928
BsmAI GTCTC 4 cut(s) 111, 159, 291, 654
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 6 cut(s) 61, 67, 251, 350, 414, 935
BsoBI CYCGRG 2 cut(s) 685, 832
Bsp1286I GDGCHC 1 cut(s) 693
Bsp143I GATC 3 cut(s) 496, 592, 850
BspACI CCGC 5 cut(s) 62, 64, 298, 354, 403
BspANI GGCC 6 cut(s) 61, 67, 251, 350, 414, 935
BspCNI CTCAG 1 cut(s) 480
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 5 cut(s) 498, 579, 604, 692, 920
BspMAI CTGCAG 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 819
BspOI GCTAGC 1 cut(s) 560
BspPI GGATC 3 cut(s) 491, 504, 845
BspT107I GGYRCC 1 cut(s) 918
BspTI CTTAAG 1 cut(s) 653
BsrI ACTGG 2 cut(s) 451, 623
BssECI CCNNGG 8 cut(s) 62, 458, 565, 676, 685, 686, 709, 832
BssMI GATC 3 cut(s) 496, 592, 850
BssNI GRCGYC 2 cut(s) 397, 919
BssT1I CCWWGG 3 cut(s) 565, 676, 709
Bst2UI CCWGG 3 cut(s) 459, 816, 937
Bst4CI ACNGT 2 cut(s) 285, 953
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 2 cut(s) 397, 919
BstAFI CTTAAG 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 407, 558
BstDEI CTNAG 2 cut(s) 488, 598
BstDSI CCRYGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 1 cut(s) 922
BstHHI GCGC 2 cut(s) 275, 921
BstKTI GATC 3 cut(s) 499, 595, 853
BstMAI GTCTC 4 cut(s) 111, 159, 291, 654
BstMBI GATC 3 cut(s) 496, 592, 850
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 8 cut(s) 257, 272, 362, 411, 548, 557, 569, 932
BstNI CCWGG 3 cut(s) 459, 816, 937
BstSCI CCNGG 7 cut(s) 457, 684, 685, 814, 831, 832, 935
BstSFI CTRYAG 2 cut(s) 290, 949
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 5 cut(s) 24, 27, 387, 547, 946
BstX2I RGATCY 2 cut(s) 496, 592
BstXI CCANNNNNNTGG 1 cut(s) 630
BstYI RGATCY 2 cut(s) 496, 592
BstZI CGGCCG 1 cut(s) 249
BsuI GTATCC 1 cut(s) 692
BsuRI GGCC 6 cut(s) 61, 67, 251, 350, 414, 935
BtgI CCRYGG 1 cut(s) 62
BtgZI GCGATG 1 cut(s) 834
BtsCI GGATG 1 cut(s) 97
BveI ACCTGC 1 cut(s) 819
Cac8I GCNNGC 2 cut(s) 407, 558
CaiI CAGNNNCTG 1 cut(s) 289
CfoI GCGC 2 cut(s) 275, 921
Cfr13I GGNCC 4 cut(s) 348, 413, 755, 977
Cfr42I CCGCGG 1 cut(s) 65
Cfr9I CCCGGG 2 cut(s) 685, 832
CseI GACGC 1 cut(s) 386
Csp6I GTAC 1 cut(s) 385
CviAII CATG 5 cut(s) 19, 69, 201, 539, 695
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 488, 598
DinI GGCGCC 1 cut(s) 920
DpnI GATC 3 cut(s) 498, 594, 852
DpnII GATC 3 cut(s) 496, 592, 850
EaeI YGGCCR 3 cut(s) 59, 65, 249
EagI CGGCCG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EciI GGCGGA 1 cut(s) 343
EclXI CGGCCG 1 cut(s) 249
Eco130I CCWWGG 3 cut(s) 565, 676, 709
Eco24I GRGCYC 1 cut(s) 693
Eco47I GGWCC 2 cut(s) 755, 977
Eco52I CGGCCG 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 914
Eco88I CYCGRG 2 cut(s) 685, 832
EcoO109I RGGNCCY 2 cut(s) 348, 977
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 3 cut(s) 457, 814, 935
EcoT14I CCWWGG 3 cut(s) 565, 676, 709
EcoT38I GRGCYC 1 cut(s) 693
EgeI GGCGCC 1 cut(s) 920
EheI GGCGCC 1 cut(s) 920
ErhI CCWWGG 3 cut(s) 565, 676, 709
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 5 cut(s) 22, 72, 204, 542, 698
FaqI GGGAC 1 cut(s) 384
FatI CATG 5 cut(s) 18, 68, 200, 538, 694
FauI CCCGC 1 cut(s) 410
FauNDI CATATG 2 cut(s) 424, 731
Fnu4HI GCNGC 7 cut(s) 13, 16, 62, 65, 376, 561, 960
FokI GGATG 1 cut(s) 84
FriOI GRGCYC 1 cut(s) 693
Fsp4HI GCNGC 7 cut(s) 13, 16, 62, 65, 376, 561, 960
FspBI CTAG 3 cut(s) 557, 668, 923
GlaI GCGC 2 cut(s) 274, 920
GluI GCNGC 7 cut(s) 13, 16, 62, 65, 376, 561, 960
GsuI CTGGAG 1 cut(s) 468
HaeII RGCGCY 1 cut(s) 922
HaeIII GGCC 6 cut(s) 61, 67, 251, 350, 414, 935
HapII CCGG 2 cut(s) 686, 833
HgaI GACGC 1 cut(s) 386
HhaI GCGC 2 cut(s) 275, 921
Hin1I GRCGYC 2 cut(s) 397, 919
Hin1II CATG 5 cut(s) 22, 72, 204, 542, 698
Hin6I GCGC 2 cut(s) 273, 919
HinP1I GCGC 2 cut(s) 273, 919
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 1 cut(s) 45
HpaII CCGG 2 cut(s) 686, 833
HphI GGTGA 1 cut(s) 910
Hpy166II GTNNAC 2 cut(s) 985, 1032
Hpy188I TCNGA 4 cut(s) 50, 281, 489, 1009
Hpy188III TCNNGA 2 cut(s) 581, 745
Hpy8I GTNNAC 2 cut(s) 985, 1032
HpyAV CCTTC 3 cut(s) 386, 889, 895
HpyCH4III ACNGT 2 cut(s) 285, 953
HpyCH4V TGCA 5 cut(s) 192, 292, 437, 767, 962
HpyF10VI GCNNNNNNNGC 8 cut(s) 257, 272, 362, 411, 548, 557, 569, 932
HpyF3I CTNAG 2 cut(s) 488, 598
Hsp92I GRCGYC 2 cut(s) 397, 919
Hsp92II CATG 5 cut(s) 22, 72, 204, 542, 698
HspAI GCGC 2 cut(s) 273, 919
KasI GGCGCC 1 cut(s) 918
KspI CCGCGG 1 cut(s) 65
Kzo9I GATC 3 cut(s) 496, 592, 850
LmnI GCTCC 4 cut(s) 53, 602, 696, 889
Lsp1109I GCAGC 5 cut(s) 24, 27, 387, 547, 946
LweI GCATC 1 cut(s) 106
MaeI CTAG 3 cut(s) 557, 668, 923
MalI GATC 3 cut(s) 498, 594, 852
MboI GATC 3 cut(s) 496, 592, 850
MboII GAAGA 3 cut(s) 101, 325, 327
MflI RGATCY 2 cut(s) 496, 592
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 3 cut(s) 331, 417, 826
Mly113I GGCGCC 1 cut(s) 919
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 2 cut(s) 282, 733
MseI TTAA 4 cut(s) 6, 522, 654, 825
MslI CAYNNNNRTG 3 cut(s) 23, 251, 1023
MspA1I CMGCKG 2 cut(s) 64, 405
MspCI CTTAAG 1 cut(s) 653
MspI CCGG 2 cut(s) 686, 833
MspR9I CCNGG 7 cut(s) 459, 686, 687, 816, 833, 834, 937
MvaI CCWGG 3 cut(s) 459, 816, 937
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 8 cut(s) 257, 272, 362, 411, 548, 557, 569, 932
NarI GGCGCC 1 cut(s) 919
NciI CCSGG 4 cut(s) 686, 687, 833, 834
NdeI CATATG 2 cut(s) 424, 731
NdeII GATC 3 cut(s) 496, 592, 850
NheI GCTAGC 1 cut(s) 556
NlaIII CATG 5 cut(s) 22, 72, 204, 542, 698
NlaIV GGNNCC 5 cut(s) 498, 579, 604, 692, 920
OliI CACNNNNGTG 1 cut(s) 251
PkrI GCNGC 7 cut(s) 14, 17, 63, 66, 377, 562, 961
PleI GAGTC 1 cut(s) 39
PluTI GGCGCC 1 cut(s) 922
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 977
Psp5II RGGWCCY 1 cut(s) 977
Psp6I CCWGG 3 cut(s) 457, 814, 935
PspGI CCWGG 3 cut(s) 457, 814, 935
PspN4I GGNNCC 5 cut(s) 498, 579, 604, 692, 920
PspPI GGNCC 4 cut(s) 348, 413, 755, 977
PspPPI RGGWCCY 1 cut(s) 977
PstI CTGCAG 1 cut(s) 294
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 496, 592
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 3 cut(s) 23, 251, 1023
SacII CCGCGG 1 cut(s) 65
SaqAI TTAA 4 cut(s) 6, 522, 654, 825
SatI GCNGC 7 cut(s) 13, 16, 62, 65, 376, 561, 960
Sau3AI GATC 3 cut(s) 496, 592, 850
Sau96I GGNCC 4 cut(s) 348, 413, 755, 977
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 7 cut(s) 459, 686, 687, 816, 833, 834, 937
SduI GDGCHC 1 cut(s) 693
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 2 cut(s) 290, 949
SfoI GGCGCC 1 cut(s) 920
Sfr303I CCGCGG 1 cut(s) 65
SgrBI CCGCGG 1 cut(s) 65
SinI GGWCC 2 cut(s) 755, 977
SmaI CCCGGG 2 cut(s) 687, 834
SmiMI CAYNNNNRTG 3 cut(s) 23, 251, 1023
SmlI CTYRAG 2 cut(s) 125, 653
SmoI CTYRAG 2 cut(s) 125, 653
Sse9I AATT 3 cut(s) 331, 417, 826
SsiI CCGC 5 cut(s) 62, 64, 298, 354, 403
SspDI GGCGCC 1 cut(s) 918
SspI AATATT 1 cut(s) 588
SspMI CTAG 3 cut(s) 557, 668, 923
StyD4I CCNGG 7 cut(s) 457, 684, 685, 814, 831, 832, 935
StyI CCWWGG 3 cut(s) 565, 676, 709
TaaI ACNGT 2 cut(s) 285, 953
TasI AATT 3 cut(s) 331, 417, 826
TauI GCSGC 2 cut(s) 64, 67
Tru1I TTAA 4 cut(s) 6, 522, 654, 825
Tru9I TTAA 4 cut(s) 6, 522, 654, 825
TseI GCWGC 5 cut(s) 12, 15, 375, 560, 959
TspDTI ATGAA 2 cut(s) 189, 599
TspGWI ACGGA 2 cut(s) 93, 402
TspMI CCCGGG 2 cut(s) 685, 832
Vha464I CTTAAG 1 cut(s) 653
VpaK11BI GGWCC 2 cut(s) 755, 977
XapI RAATTY 1 cut(s) 331
XmaI CCCGGG 2 cut(s) 685, 832
XspI CTAG 3 cut(s) 557, 668, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.