Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004485

Physical Location & Seq

Genomic Coordinates Reverse (-)

34529349 .. 34534901

Gene Structure 5553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTAGCTGCCTTTGGTGCTTTGGTTCCAGAAATTTTAGACCTGTTAGGAGCCTTTCACTTTGTTGAGCCTGTATGGTGGCGAGTTGGCTATTCAAAGCTTAAGGGAGATACACTGGACTACCTTGGCATCCCAGGACTCCACGTAGCTGGAAGCCAAGGAGTAATTGTCATAGCCATATGCCAAGTCCTCCTGATGGTTGGACCAGAATATGCAAGATATTGTGGCATTGAAGCATTAGAGCCGCTGGGAATCTACTTGCCAGGTGATATTAATTACCCAGGAGGAGAGCTTTTTGATCCCTTGAACCTCTCGAAAGACCCTGTAGCTTTTGAAGAGCTGAAGGTGAAAGAGATAAAGAATGGGCGCCTAGCTATGGTTGCCTGGTTGGGCTTTTACAGTCAAGCAGCCTTGACAGGTAAAGGTCCTGTACAGAACCTACTTGAACACATTTCAGATCCCCTACACAATAATCTGTTGTCAATACTCAACCTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

166

Amino Acids

18.1

Weight (kDa)

4.93

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	1 - 136	2.2e-23	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76570
fragaria_vesca	FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480 FvH4_5g26480
malus_domestica	MD06G1001700.v1.1
prunus_persica	Prupe.5G002700_v2.0.a1 Prupe.5G002700_v2.0.a1
pyrus_communis	pycom06g00180
rosa_chinensis	RchiOBHm_Chr7g0217391
rosa_laevigata	RLG00000002481
rosa_multiflora	Rmu_co8208352.1_g000001 Rmu_sc0000145.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242130 Rroxscaffold_3G00242220
rosa_rugosa	Rorug07G0168700 Rorug07G0168800
rosa_samantha	Rh7AG308400 Rh7BG299100 Rh7CG327700 Rh7DG307700
rosa_wichuraiana	Rw7G026150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	366
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	2 cut(s)	293, 452
AcsI	RAATTY	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	362
AcyI	GRCGYC	1 cut(s)	367
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	2 cut(s)	196, 376
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	5 cut(s)	96, 233, 307, 335, 446
AjnI	CCWGG	4 cut(s)	133, 262, 280, 383
AluBI	AGCT	7 cut(s)	8, 100, 149, 292, 329, 340, 374
AluI	AGCT	7 cut(s)	8, 100, 149, 292, 329, 340, 374
AlwI	GGATC	2 cut(s)	293, 452
ApeKI	GCWGC	2 cut(s)	8, 407
ApoI	RAATTY	1 cut(s)	33
AseI	ATTAAT	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	203, 425
AsuHPI	GGTGA	2 cut(s)	278, 358
AsuNHI	GCTAGC	1 cut(s)	4
AvaII	GGWCC	2 cut(s)	203, 425
BanI	GGYRCC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	4 cut(s)	135, 264, 282, 385
BfaI	CTAG	2 cut(s)	5, 371
BfmI	CTRYAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	370
BfrI	CTTAAG	1 cut(s)	101
BisI	GCNGC	3 cut(s)	9, 245, 408
BlsI	GCNGC	3 cut(s)	10, 246, 409
Bme1390I	CCNGG	4 cut(s)	135, 264, 282, 385
Bme18I	GGWCC	2 cut(s)	203, 425
BmgT120I	GGNCC	2 cut(s)	203, 425
BmiI	GGNNCC	3 cut(s)	27, 52, 368
BmrFI	CCNGG	4 cut(s)	135, 264, 282, 385
BmsI	GCATC	1 cut(s)	138
BmtI	GCTAGC	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	367
BsaJI	CCNNGG	4 cut(s)	124, 133, 157, 280
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 376
Bse1I	ACTGG	1 cut(s)	120
BseBI	CCWGG	4 cut(s)	135, 264, 282, 385
BseDI	CCNNGG	4 cut(s)	124, 133, 157, 280
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	196, 376
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	419
BseYI	CCCAGC	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	196, 376
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	2 cut(s)	298, 457
BspACI	CCGC	1 cut(s)	245
BspLI	GGNNCC	3 cut(s)	27, 52, 368
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	2 cut(s)	293, 452
BspQI	GCTCTTC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	366
BspTI	CTTAAG	1 cut(s)	101
BsrGI	TGTACA	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	4 cut(s)	124, 133, 157, 280
BssMI	GATC	2 cut(s)	298, 457
BssNI	GRCGYC	1 cut(s)	367
BssT1I	CCWWGG	2 cut(s)	124, 157
Bst2UI	CCWGG	4 cut(s)	135, 264, 282, 385
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	367
BstAFI	CTTAAG	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	430
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	301, 460
BstMBI	GATC	2 cut(s)	298, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 380
BstNI	CCWGG	4 cut(s)	135, 264, 282, 385
BstSCI	CCNGG	4 cut(s)	133, 262, 280, 383
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	457
BstXI	CCANNNNNNTGG	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	457
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	203, 425
Csp6I	GTAC	1 cut(s)	431
CviQI	GTAC	1 cut(s)	431
DinI	GGCGCC	1 cut(s)	368
DpnI	GATC	2 cut(s)	300, 459
DpnII	GATC	2 cut(s)	298, 457
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	124, 157
Eco47I	GGWCC	2 cut(s)	203, 425
Eco57I	CTGAAG	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	4 cut(s)	133, 262, 280, 383
EcoT14I	CCWWGG	2 cut(s)	124, 157
EgeI	GGCGCC	1 cut(s)	368
EheI	GGCGCC	1 cut(s)	368
ErhI	CCWWGG	2 cut(s)	124, 157
FaiI	YATR	6 cut(s)	76, 173, 179, 181, 213, 377
FauNDI	CATATG	1 cut(s)	179
Fnu4HI	GCNGC	3 cut(s)	9, 245, 408
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	9, 245, 408
FspBI	CTAG	2 cut(s)	5, 371
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	3 cut(s)	9, 245, 408
GsaI	CCCAGC	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	370
HhaI	GCGC	1 cut(s)	369
Hin1I	GRCGYC	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	2 cut(s)	138, 252
HphI	GGTGA	2 cut(s)	278, 358
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	3 cut(s)	29, 193, 313
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 380
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	367
HspAI	GCGC	1 cut(s)	367
KasI	GGCGCC	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	298, 457
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	5, 371
MaeII	ACGT	1 cut(s)	144
MalI	GATC	2 cut(s)	300, 459
MboI	GATC	2 cut(s)	298, 457
MboII	GAAGA	1 cut(s)	347
MflI	RGATCY	1 cut(s)	457
MluCI	AATT	3 cut(s)	33, 165, 274
Mly113I	GGCGCC	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	3 cut(s)	200, 278, 320
MseI	TTAA	2 cut(s)	102, 273
MspA1I	CMGCKG	1 cut(s)	247
MspCI	CTTAAG	1 cut(s)	101
MspR9I	CCNGG	4 cut(s)	135, 264, 282, 385
MvaI	CCWGG	4 cut(s)	135, 264, 282, 385
MwoI	GCNNNNNNNGC	2 cut(s)	17, 380
NarI	GGCGCC	1 cut(s)	367
NdeI	CATATG	1 cut(s)	179
NdeII	GATC	2 cut(s)	298, 457
NheI	GCTAGC	1 cut(s)	4
NlaIV	GGNNCC	3 cut(s)	27, 52, 368
PciSI	GCTCTTC	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	3 cut(s)	10, 246, 409
PleI	GAGTC	1 cut(s)	132
PluTI	GGCGCC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	425
PshBI	ATTAAT	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	4 cut(s)	133, 262, 280, 383
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	4 cut(s)	133, 262, 280, 383
PspN4I	GGNNCC	3 cut(s)	27, 52, 368
PspPI	GGNCC	2 cut(s)	203, 425
PspPPI	RGGWCCY	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	102, 273
SatI	GCNGC	3 cut(s)	9, 245, 408
Sau3AI	GATC	2 cut(s)	298, 457
Sau96I	GGNCC	2 cut(s)	203, 425
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	4 cut(s)	135, 264, 282, 385
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	324
SfoI	GGCGCC	1 cut(s)	368
SinI	GGWCC	2 cut(s)	203, 425
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	3 cut(s)	33, 165, 274
SsiI	CCGC	1 cut(s)	245
SspDI	GGCGCC	1 cut(s)	366
SspMI	CTAG	2 cut(s)	5, 371
StyD4I	CCNGG	4 cut(s)	133, 262, 280, 383
StyI	CCWWGG	2 cut(s)	124, 157
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	314
TasI	AATT	3 cut(s)	33, 165, 274
TatI	WGTACW	1 cut(s)	430
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	2 cut(s)	102, 273
Tru9I	TTAA	2 cut(s)	102, 273
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	2 cut(s)	8, 407
TspRI	CASTG	1 cut(s)	120
Vha464I	CTTAAG	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	203, 425
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	1 cut(s)	33
XspI	CTAG	2 cut(s)	5, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.