Rorug07G0168700

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004485
Physical Location & Seq
Forward (+)
13635403 .. 13636009
607 bp
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UTR
Exon/CDS
Intron
Rorug07G0168700.1

Sequence Viewer

Length: 438 bp
ATGAAGTCTTCCTTATGGGATCTCCACGGCAAGGTTCTCTTCACTCTATGTGAGCATAGAATGGGAATGCTTTCGCGTTGGAAGGGCTATGCAACCAACGGGGCTAATCCAATGTTTCGAGTGAGAAAGAGTTGCAGATCAATCCTCGGAAACAAAGAATCTAGTAACTCGTACAAAGTAAGCATGGGATCCGACGGAAGTTGCTACAGGTTTCAAGGTTTGGCAGCTGGAAAATCAGCAGCTTTCAGATTAACTGACAGTAACGGAAGAGTTGTGGCTGAGGCAAAGCGAAAGCAATCATCTTCAGGTGTTGTGTTGGGAGATGATATTTTGAGTTTGGTGGTGGAGTCTGATGTGGATCATTCTTTCATCATGGCTCTTGTCGATCACTGTTTATGGCTTAATCACTGTTTATGGCATCGCCCAGAAGAAAATTAA

Protein Analysis

145

Amino Acids

16.18

Weight (kDa)

9.08

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 4 - 128 6.6e-18 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 76
AclWI GGATC 4 cut(s) 27, 183, 196, 366
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 215
AluBI AGCT 2 cut(s) 227, 242
AluI AGCT 2 cut(s) 227, 242
AlwI GGATC 4 cut(s) 27, 183, 196, 366
ApeKI GCWGC 2 cut(s) 224, 239
Asp700I GAANNNNTTC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 188
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 236, 251
BceAI ACGGC 1 cut(s) 43
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 205
BisI GCNGC 2 cut(s) 225, 240
BlsI GCNGC 2 cut(s) 226, 241
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 1 cut(s) 427
Bpu10I CCTNAGC 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 25, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 25, 145
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 270
BseXI GCAGC 2 cut(s) 236, 251
Bsh1236I CGCG 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 31
BsmI GAATGC 1 cut(s) 72
Bsp143I GATC 5 cut(s) 19, 137, 188, 358, 385
BspCNI CTCAG 1 cut(s) 271
BspFNI CGCG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 4 cut(s) 27, 183, 196, 366
BssECI CCNNGG 2 cut(s) 25, 145
BssMI GATC 5 cut(s) 19, 137, 188, 358, 385
Bst4CI ACNGT 3 cut(s) 260, 392, 410
Bst6I CTCTTC 2 cut(s) 44, 262
BstDEI CTNAG 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 25
BstFNI CGCG 1 cut(s) 76
BstKTI GATC 5 cut(s) 22, 140, 191, 361, 388
BstMBI GATC 5 cut(s) 19, 137, 188, 358, 385
BstSFI CTRYAG 1 cut(s) 205
BstUI CGCG 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 236, 251
BstX2I RGATCY 2 cut(s) 19, 188
BstYI RGATCY 2 cut(s) 19, 188
BtgI CCRYGG 1 cut(s) 25
BtgZI GCGATG 1 cut(s) 404
BtsIMutI CAGTG 2 cut(s) 388, 406
Csp6I GTAC 1 cut(s) 172
CviAII CATG 2 cut(s) 184, 373
CviJI RGCY 7 cut(s) 87, 104, 227, 242, 278, 377, 400
CviKI_1 RGCY 7 cut(s) 87, 104, 227, 242, 278, 377, 400
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 1 cut(s) 279
DpnI GATC 5 cut(s) 21, 139, 190, 360, 387
DpnII GATC 5 cut(s) 19, 137, 188, 358, 385
Eam1104I CTCTTC 2 cut(s) 44, 262
EarI CTCTTC 2 cut(s) 44, 262
Eco57I CTGAAG 1 cut(s) 288
FaeI CATG 2 cut(s) 187, 376
FaiI YATR 8 cut(s) 16, 49, 57, 90, 185, 374, 397, 415
FalI AAGNNNNNCTT 3 cut(s) 28, 23, 55
FatI CATG 2 cut(s) 183, 372
Fnu4HI GCNGC 2 cut(s) 225, 240
Fsp4HI GCNGC 2 cut(s) 225, 240
FspBI CTAG 1 cut(s) 162
GluI GCNGC 2 cut(s) 225, 240
Hin1II CATG 2 cut(s) 187, 376
HinfI GANTC 2 cut(s) 158, 347
Hpy188I TCNGA 4 cut(s) 149, 193, 248, 352
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 3 cut(s) 260, 392, 410
HpyCH4V TGCA 2 cut(s) 92, 135
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 2 cut(s) 187, 376
Kzo9I GATC 5 cut(s) 19, 137, 188, 358, 385
LpnPI CCDG 3 cut(s) 193, 213, 291
Lsp1109I GCAGC 2 cut(s) 236, 251
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 164, 260
MalI GATC 5 cut(s) 21, 139, 190, 360, 387
MboI GATC 5 cut(s) 19, 137, 188, 358, 385
MboII GAAGA 3 cut(s) 31, 279, 294
MflI RGATCY 2 cut(s) 19, 188
MluCI AATT 1 cut(s) 433
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 2 cut(s) 59, 216
MnlI CCTC 2 cut(s) 155, 274
MroXI GAANNNNTTC 1 cut(s) 70
MseI TTAA 3 cut(s) 251, 402, 436
MspA1I CMGCKG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 72
MvnI CGCG 1 cut(s) 76
NdeII GATC 5 cut(s) 19, 137, 188, 358, 385
NlaIII CATG 2 cut(s) 187, 376
NlaIV GGNNCC 1 cut(s) 190
PctI GAATGC 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 2 cut(s) 226, 241
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 2 cut(s) 19, 188
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 3 cut(s) 251, 402, 436
SatI GCNGC 2 cut(s) 225, 240
Sau3AI GATC 5 cut(s) 19, 137, 188, 358, 385
SchI GAGTC 1 cut(s) 356
SetI ASST 6 cut(s) 36, 212, 220, 229, 244, 310
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 205
Sse9I AATT 1 cut(s) 433
SspMI CTAG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 260, 392, 410
TaqI TCGA 2 cut(s) 118, 384
TasI AATT 1 cut(s) 433
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 3 cut(s) 251, 402, 436
Tru9I TTAA 3 cut(s) 251, 402, 436
TscAI CASTG 2 cut(s) 395, 413
TseI GCWGC 2 cut(s) 224, 239
TspDTI ATGAA 2 cut(s) 17, 358
TspGWI ACGGA 2 cut(s) 210, 279
TspRI CASTG 2 cut(s) 395, 413
XmnI GAANNNNTTC 1 cut(s) 70
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.