AT1G77145

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011152
Physical Location & Seq
Reverse (-)
28989838 .. 28991454
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77145.2

Sequence Viewer

Length: 783 bp
ATGGGAAGCTTGGGAGAAGAAGATTTAGAGAAGCTTGTGCTCGATTATATCGAGTCTCCGATCACCGTCTCCCAGCATATTGAGAGTTCTACAACGGCTCTTATCACTCTTAAGGAGATTCTTAGGGCAAAAGGAGAAAAAGAGAAGGAGATGGAAGAGAAGATATGGTCGTTTATCAATGGAGGAAGGTTATCATATGAAGGAGACGATGAGAAGAGAGATGTGATGAACAAGATTGTCTCTAAACTCAGATCTGAAGGCTATGATGCTTCTCTCTCCAAAACCTCATGGGACTCTTCTTTTGATCATCGTGAAGGGTGTAGAGTGTTTAGGTGCTCGAGGAAGTATGAGTACATTGACGTCATGGTGAAGGGTGATAGCAACCGTGATGGCGTAAGCAAGCTGAAACGTGTGATAATTGATCTTGACTTCAAAACTCAGTTTGAGCTAGCGAGACAGACAGAAGCTTACAAAGATATGACTGAGATGCTTCCATTAGTGTTTGTGGCGACAGAAGGGAGACTGAGAAGAGTTGTTTCGTTGGTTTGTGGTGAGATGAAAAAGTCCATGAAGAAAGAAGGAATGTCTAGGCCTCCATGGAGGACTACGAGATACATGCAGTCCAAGTGGCTACCAGAGAATCGTCGAAGAGTCTCCGGTTGTAAGAAAGGTTCTTGGTCTTGGTCTGTGTTTGATGATGGTAGTGAAGGAAGAGGTGAAGCTAGGACTTGGACAGTAAGTGGTAGTGGTCCGAAAACTAAGTGTTGTTTTCCTATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

260

Amino Acids

29.92

Weight (kDa)

8.9

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 58 - 159 2.2e-36 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 1 cut(s) 353
AflII CTTAAG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 1 cut(s) 433
AluBI AGCT 6 cut(s) 9, 34, 403, 448, 467, 722
AluI AGCT 6 cut(s) 9, 34, 403, 448, 467, 722
Alw21I GWGCWC 2 cut(s) 42, 338
Alw26I GTCTC 7 cut(s) 60, 73, 198, 244, 448, 514, 658
Ama87I CYCGRG 1 cut(s) 337
AoxI GGCC 1 cut(s) 590
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
AspS9I GGNCC 1 cut(s) 749
AsuHPI GGTGA 5 cut(s) 55, 379, 386, 563, 728
AsuNHI GCTAGC 1 cut(s) 448
AvaI CYCGRG 1 cut(s) 337
AvaII GGWCC 1 cut(s) 749
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
Bbv12I GWGCWC 2 cut(s) 42, 338
BccI CCATC 3 cut(s) 145, 383, 692
BceAI ACGGC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 7 cut(s) 60, 73, 198, 244, 448, 514, 658
BfaI CTAG 3 cut(s) 449, 588, 723
BfrI CTTAAG 1 cut(s) 110
BglII AGATCT 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 749
BmeT110I CYCGRG 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 749
BmsI GCATC 2 cut(s) 256, 477
BmtI GCTAGC 1 cut(s) 452
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 596
BsaWI WCCGGW 1 cut(s) 656
BseDI CCNNGG 1 cut(s) 596
BseMII CTCAG 4 cut(s) 262, 452, 474, 515
BseYI CCCAGC 1 cut(s) 72
BshFI GGCC 1 cut(s) 592
BsiHKAI GWGCWC 2 cut(s) 42, 338
BsiHKCI CYCGRG 1 cut(s) 337
BsiSI CCGG 1 cut(s) 657
BslFI GGGAC 1 cut(s) 305
BsmAI GTCTC 7 cut(s) 60, 73, 198, 244, 448, 514, 658
BsmBI CGTCTC 2 cut(s) 73, 198
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 1 cut(s) 592
BsoBI CYCGRG 1 cut(s) 337
Bsp1286I GDGCHC 2 cut(s) 42, 338
Bsp143I GATC 4 cut(s) 60, 251, 304, 421
Bsp19I CCATGG 1 cut(s) 596
BspANI GGCC 1 cut(s) 592
BspCNI CTCAG 4 cut(s) 261, 451, 475, 516
BspOI GCTAGC 1 cut(s) 452
BspTI CTTAAG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 4 cut(s) 60, 251, 304, 421
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 596
Bst4CI ACNGT 3 cut(s) 67, 386, 736
Bst6I CTCTTC 6 cut(s) 150, 209, 301, 523, 643, 706
BstACI GRCGYC 1 cut(s) 360
BstAFI CTTAAG 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 401, 450
BstDEI CTNAG 6 cut(s) 122, 248, 438, 483, 524, 759
BstDSI CCRYGG 1 cut(s) 596
BstKTI GATC 4 cut(s) 63, 254, 307, 424
BstMAI GTCTC 7 cut(s) 60, 73, 198, 244, 448, 514, 658
BstMBI GATC 4 cut(s) 60, 251, 304, 421
BstNSI RCATGY 1 cut(s) 619
BstX2I RGATCY 1 cut(s) 251
BstYI RGATCY 1 cut(s) 251
BsuRI GGCC 1 cut(s) 592
BtgI CCRYGG 1 cut(s) 596
Cac8I GCNNGC 2 cut(s) 401, 450
Cfr13I GGNCC 1 cut(s) 749
Csp6I GTAC 1 cut(s) 352
CviAII CATG 5 cut(s) 288, 364, 568, 597, 616
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 6 cut(s) 122, 248, 438, 483, 524, 759
DpnI GATC 4 cut(s) 62, 253, 306, 423
DpnII GATC 4 cut(s) 60, 251, 304, 421
Eam1104I CTCTTC 6 cut(s) 150, 209, 301, 523, 643, 706
EarI CTCTTC 6 cut(s) 150, 209, 301, 523, 643, 706
Eco130I CCWWGG 1 cut(s) 596
Eco147I AGGCCT 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 749
Eco57I CTGAAG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 596
Esp3I CGTCTC 2 cut(s) 73, 198
FaeI CATG 5 cut(s) 291, 367, 571, 600, 619
FaqI GGGAC 1 cut(s) 305
FatI CATG 5 cut(s) 287, 363, 567, 596, 615
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 304
FspBI CTAG 3 cut(s) 449, 588, 723
GsaI CCCAGC 1 cut(s) 76
HaeIII GGCC 1 cut(s) 592
HapII CCGG 1 cut(s) 657
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 5 cut(s) 291, 367, 571, 600, 619
HindIII AAGCTT 3 cut(s) 7, 32, 465
HinfI GANTC 5 cut(s) 53, 118, 293, 640, 651
HpaII CCGG 1 cut(s) 657
HphI GGTGA 5 cut(s) 55, 379, 386, 563, 728
Hpy188I TCNGA 5 cut(s) 60, 251, 256, 753, 782
Hpy188III TCNNGA 2 cut(s) 311, 425
Hpy99I CGWCG 1 cut(s) 648
HpyAV CCTTC 9 cut(s) 139, 180, 194, 251, 308, 364, 509, 572, 701
HpyCH4III ACNGT 3 cut(s) 67, 386, 736
HpyCH4IV ACGT 2 cut(s) 360, 409
HpyCH4V TGCA 1 cut(s) 619
HpyF3I CTNAG 6 cut(s) 122, 248, 438, 483, 524, 759
HpySE526I ACGT 2 cut(s) 360, 409
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 5 cut(s) 291, 367, 571, 600, 619
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 4 cut(s) 60, 251, 304, 421
LpnPI CCDG 3 cut(s) 86, 648, 670
LweI GCATC 2 cut(s) 256, 477
MaeI CTAG 3 cut(s) 449, 588, 723
MaeII ACGT 2 cut(s) 360, 409
MalI GATC 4 cut(s) 62, 253, 306, 423
MboI GATC 4 cut(s) 60, 251, 304, 421
MflI RGATCY 1 cut(s) 251
MhlI GDGCHC 2 cut(s) 42, 338
MluCI AATT 1 cut(s) 417
MlyI GAGTC 3 cut(s) 62, 287, 660
MnlI CCTC 6 cut(s) 176, 295, 333, 594, 603, 707
MseI TTAA 1 cut(s) 111
MspCI CTTAAG 1 cut(s) 110
MspI CCGG 1 cut(s) 657
NcoI CCATGG 1 cut(s) 596
NdeI CATATG 1 cut(s) 196
NdeII GATC 4 cut(s) 60, 251, 304, 421
NheI GCTAGC 1 cut(s) 448
NlaIII CATG 5 cut(s) 291, 367, 571, 600, 619
NspI RCATGY 1 cut(s) 619
PaeR7I CTCGAG 1 cut(s) 337
PceI AGGCCT 1 cut(s) 592
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 2 cut(s) 118, 640
PleI GAGTC 3 cut(s) 61, 287, 659
PpsI GAGTC 3 cut(s) 61, 287, 659
PspFI CCCAGC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 749
PspXI VCTCGAGB 1 cut(s) 337
PsrI GAACNNNNNNTAC 2 cut(s) 655, 687
PsuI RGATCY 1 cut(s) 251
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SaqAI TTAA 1 cut(s) 111
Sau3AI GATC 4 cut(s) 60, 251, 304, 421
Sau96I GGNCC 1 cut(s) 749
SchI GAGTC 3 cut(s) 62, 287, 660
SduI GDGCHC 2 cut(s) 42, 338
SfaNI GCATC 2 cut(s) 256, 477
Sfr274I CTCGAG 1 cut(s) 337
SinI GGWCC 1 cut(s) 749
SlaI CTCGAG 1 cut(s) 337
SmlI CTYRAG 2 cut(s) 110, 337
SmoI CTYRAG 2 cut(s) 110, 337
Sse9I AATT 1 cut(s) 417
SseBI AGGCCT 1 cut(s) 592
SspMI CTAG 3 cut(s) 449, 588, 723
StuI AGGCCT 1 cut(s) 592
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 3 cut(s) 67, 386, 736
TaiI ACGT 2 cut(s) 363, 412
TaqI TCGA 4 cut(s) 42, 51, 338, 646
TasI AATT 1 cut(s) 417
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 2 cut(s) 118, 640
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TspDTI ATGAA 4 cut(s) 213, 242, 572, 584
Vha464I CTTAAG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 749
XceI RCATGY 1 cut(s) 619
XhoI CTCGAG 1 cut(s) 337
XspI CTAG 3 cut(s) 449, 588, 723
ZraI GACGTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.