AT1G77160

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011152
Physical Location & Seq
Reverse (-)
28995146 .. 28996594
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77160.1

Sequence Viewer

Length: 792 bp
ATGGGAAGCTTGGGAGAAGAAGATTTCGAGAAGCTTGTGCTCGGTTATATCGAGTCTCCGATGACCGTCTCTCAGCATATCAACACTTCTTCAAAGGCTCTTATCACTCTTCAGGAAATATTTTTACAGGAGATTCTTAGGGCAAAAGGAGTAGAAGAGAAGGAGATGGAAGAGAAGATAAGGTCGTATATCAATAGAGGAAGGTTATCATATGAAGGAGACGATGAGAAGAGAGATGTGATGAACAAGATTGTCTCTAAACTCAGATCTGAGGGCTATAATGCTTCTCTCTCCAAAACCTCATGGGACTCTTCTTTTGATCATCGTGAAGGGTGTAGAGTGTTTACGTGCTCGAGGAAGTACGAGTACATAGACGCCATGGTGATCGGTGATAGCGACCGTGATGGCGTAAGCAAGCTGAAACGTGTGATAATTGATCTTGACTTCAAAACTCAGTTTGAGCTAGCGAGACAGACAGAAGCTTACAAAGATATGACTGAGATGCTTCCGACAGTGTTTGTGGCGACAGAAGGGAGACTGAGAAGAGTTGTTTCGTTGGTTTGTGGTGAGATGAAAAAGTCCATGAAGAAAGAAGGAATGTCTAGGCCTCCATGGAGGACTTCGAGATACATGCAGTCCAAGTGGCTACCAGAGAATTGTCGAAGAGATGCTGGTTGTAAGAAAGGGTCTTGGTCTTGGTCTGTGTTTGATGATGGTGGTGAAGGAATAGGTGAAGCTAGGTCTTGGACAGTGAGTGGTCCGAAAACTAAGTGTTGTTTTCCTATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

263

Amino Acids

30.21

Weight (kDa)

8.37

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 33 - 218 5.8e-45 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 2 cut(s) 362, 368
AflIII ACRYGT 1 cut(s) 424
AgsI TTSAA 2 cut(s) 93, 448
AluBI AGCT 6 cut(s) 9, 34, 418, 463, 482, 737
AluI AGCT 6 cut(s) 9, 34, 418, 463, 482, 737
Alw21I GWGCWC 2 cut(s) 42, 353
Alw26I GTCTC 6 cut(s) 60, 73, 213, 259, 463, 529
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 1 cut(s) 605
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspS9I GGNCC 1 cut(s) 758
AsuHPI GGTGA 5 cut(s) 394, 401, 578, 731, 743
AsuNHI GCTAGC 1 cut(s) 463
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 1 cut(s) 758
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
Bbv12I GWGCWC 2 cut(s) 42, 353
BccI CCATC 3 cut(s) 160, 398, 707
BcgI CGANNNNNNTGC 2 cut(s) 613, 647
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 6 cut(s) 60, 73, 213, 259, 463, 529
BfaI CTAG 3 cut(s) 464, 603, 738
BglII AGATCT 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 758
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 758
BmsI GCATC 2 cut(s) 492, 658
BmtI GCTAGC 1 cut(s) 467
BsaAI YACGTR 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 378, 611
BseDI CCNNGG 2 cut(s) 378, 611
BseMII CTCAG 6 cut(s) 86, 261, 277, 467, 489, 530
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 1 cut(s) 607
BsiEI CGRYCG 1 cut(s) 400
BsiHKAI GWGCWC 2 cut(s) 42, 353
BsiHKCI CYCGRG 1 cut(s) 352
BslFI GGGAC 1 cut(s) 320
BsmAI GTCTC 6 cut(s) 60, 73, 213, 259, 463, 529
BsmBI CGTCTC 2 cut(s) 73, 213
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 1 cut(s) 607
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 2 cut(s) 42, 353
Bsp143I GATC 4 cut(s) 266, 319, 384, 436
Bsp19I CCATGG 2 cut(s) 378, 611
BspANI GGCC 1 cut(s) 607
BspCNI CTCAG 6 cut(s) 85, 262, 276, 466, 490, 531
BspOI GCTAGC 1 cut(s) 467
BssECI CCNNGG 2 cut(s) 378, 611
BssMI GATC 4 cut(s) 266, 319, 384, 436
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 2 cut(s) 378, 611
Bst4CI ACNGT 4 cut(s) 67, 401, 514, 751
Bst6I CTCTTC 7 cut(s) 114, 150, 165, 224, 316, 538, 658
BstACI GRCGYC 1 cut(s) 375
BstBAI YACGTR 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 416, 465
BstDEI CTNAG 8 cut(s) 72, 137, 263, 270, 453, 498, 539, 768
BstDSI CCRYGG 2 cut(s) 378, 611
BstKTI GATC 4 cut(s) 269, 322, 387, 439
BstMAI GTCTC 6 cut(s) 60, 73, 213, 259, 463, 529
BstMBI GATC 4 cut(s) 266, 319, 384, 436
BstMCI CGRYCG 1 cut(s) 400
BstNSI RCATGY 1 cut(s) 634
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 1 cut(s) 607
BtgI CCRYGG 2 cut(s) 378, 611
BtsIMutI CAGTG 2 cut(s) 519, 756
Cac8I GCNNGC 2 cut(s) 416, 465
Cfr13I GGNCC 1 cut(s) 758
CseI GACGC 1 cut(s) 383
Csp6I GTAC 2 cut(s) 361, 367
CviAII CATG 5 cut(s) 303, 379, 583, 612, 631
CviQI GTAC 2 cut(s) 361, 367
DdeI CTNAG 8 cut(s) 72, 137, 263, 270, 453, 498, 539, 768
DpnI GATC 4 cut(s) 268, 321, 386, 438
DpnII GATC 4 cut(s) 266, 319, 384, 436
Eam1104I CTCTTC 7 cut(s) 114, 150, 165, 224, 316, 538, 658
EarI CTCTTC 7 cut(s) 114, 150, 165, 224, 316, 538, 658
Eco130I CCWWGG 2 cut(s) 378, 611
Eco147I AGGCCT 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 758
Eco57I CTGAAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 378, 611
ErhI CCWWGG 2 cut(s) 378, 611
Esp3I CGTCTC 2 cut(s) 73, 213
FaeI CATG 5 cut(s) 306, 382, 586, 615, 634
FaqI GGGAC 1 cut(s) 320
FatI CATG 5 cut(s) 302, 378, 582, 611, 630
FauNDI CATATG 1 cut(s) 211
FbaI TGATCA 1 cut(s) 319
FspBI CTAG 3 cut(s) 464, 603, 738
HaeIII GGCC 1 cut(s) 607
HgaI GACGC 1 cut(s) 383
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 5 cut(s) 306, 382, 586, 615, 634
HindIII AAGCTT 3 cut(s) 7, 32, 480
HinfI GANTC 3 cut(s) 53, 133, 308
HphI GGTGA 5 cut(s) 394, 401, 578, 731, 743
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 6 cut(s) 60, 266, 271, 510, 762, 791
Hpy188III TCNNGA 5 cut(s) 28, 113, 326, 440, 624
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 7 cut(s) 154, 195, 209, 323, 524, 587, 716
HpyCH4III ACNGT 4 cut(s) 67, 401, 514, 751
HpyCH4IV ACGT 2 cut(s) 347, 424
HpyCH4V TGCA 1 cut(s) 634
HpyF3I CTNAG 8 cut(s) 72, 137, 263, 270, 453, 498, 539, 768
HpySE526I ACGT 2 cut(s) 347, 424
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 5 cut(s) 306, 382, 586, 615, 634
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 4 cut(s) 266, 319, 384, 436
LpnPI CCDG 4 cut(s) 98, 113, 657, 663
LweI GCATC 2 cut(s) 492, 658
MaeI CTAG 3 cut(s) 464, 603, 738
MaeII ACGT 2 cut(s) 347, 424
MalI GATC 4 cut(s) 268, 321, 386, 438
MboI GATC 4 cut(s) 266, 319, 384, 436
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 2 cut(s) 42, 353
MluCI AATT 2 cut(s) 432, 655
MlyI GAGTC 2 cut(s) 62, 302
MmeI TCCRAC 1 cut(s) 533
MnlI CCTC 6 cut(s) 191, 265, 310, 348, 609, 618
NcoI CCATGG 2 cut(s) 378, 611
NdeI CATATG 1 cut(s) 211
NdeII GATC 4 cut(s) 266, 319, 384, 436
NheI GCTAGC 1 cut(s) 463
NlaIII CATG 5 cut(s) 306, 382, 586, 615, 634
NspI RCATGY 1 cut(s) 634
PaeR7I CTCGAG 1 cut(s) 352
PceI AGGCCT 1 cut(s) 607
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 393
PfeI GAWTC 1 cut(s) 133
PleI GAGTC 2 cut(s) 61, 302
PpsI GAGTC 2 cut(s) 61, 302
Ppu21I YACGTR 1 cut(s) 348
PspPI GGNCC 1 cut(s) 758
PspXI VCTCGAGB 1 cut(s) 352
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 2 cut(s) 362, 368
RsaNI GTAC 2 cut(s) 361, 367
Sau3AI GATC 4 cut(s) 266, 319, 384, 436
Sau96I GGNCC 1 cut(s) 758
SchI GAGTC 2 cut(s) 62, 302
SduI GDGCHC 2 cut(s) 42, 353
SfaNI GCATC 2 cut(s) 492, 658
Sfr274I CTCGAG 1 cut(s) 352
SinI GGWCC 1 cut(s) 758
SlaI CTCGAG 1 cut(s) 352
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
Sse9I AATT 2 cut(s) 432, 655
SseBI AGGCCT 1 cut(s) 607
SspI AATATT 1 cut(s) 120
SspMI CTAG 3 cut(s) 464, 603, 738
StuI AGGCCT 1 cut(s) 607
StyI CCWWGG 2 cut(s) 378, 611
TaaI ACNGT 4 cut(s) 67, 401, 514, 751
TaiI ACGT 2 cut(s) 350, 427
TaqI TCGA 5 cut(s) 27, 51, 353, 623, 661
TasI AATT 2 cut(s) 432, 655
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 1 cut(s) 133
TscAI CASTG 2 cut(s) 519, 756
TspDTI ATGAA 4 cut(s) 228, 257, 587, 599
TspRI CASTG 2 cut(s) 519, 756
VpaK11BI GGWCC 1 cut(s) 758
XceI RCATGY 1 cut(s) 634
XhoI CTCGAG 1 cut(s) 352
XspI CTAG 3 cut(s) 464, 603, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.