Rh6CG223300

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011152
Physical Location & Seq
Forward (+)
37227157 .. 37228745
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG223300.1

Sequence Viewer

Length: 486 bp
ATGATTCATCAACCTAAGAATCTGAAGAACAAATGGGTTGTGATGAAACTGAAAATGGATGGTTATGAAGCCTCTCTTTGTAAAACTTCATGGGTTTCTTCTGTTAAACTCCCCGAAGTTTATGAATTTACAGATGACTATGAATATGTTGATGTTATGGTGAAGGACAACAATTTACTCAAGGTGACAAGGTTAATAGTGGACATGGATTTCAAGTCACAATTTGAGCTTGCAAGACCATCACCAAGCTACAAAGAGCTGAAAGACATTTTGCCAGACATTTTTGTTGGGACTGAAGAAAAGCTTGACAAAGTCATATCTCTGGTTTGCTCAGCTGCACAGAAATCTCTCAAGAAAATGGGTCTTCATGTTCCTCCATGGAGAAGAGCCACCTACATGCAATCCAAGTGGCTCTCCAAAGATTGCAAGAAAATCTCAATCTCACCCACAAACATGGAATTGGGTATCATCTCCCAAATGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

161

Amino Acids

18.68

Weight (kDa)

9.01

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 7 - 140 2.4e-47 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 2 cut(s) 44, 315
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 5 cut(s) 229, 249, 259, 304, 335
AluI AGCT 5 cut(s) 229, 249, 259, 304, 335
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 125
AsuHPI GGTGA 4 cut(s) 172, 196, 234, 435
BbsI GAAGAC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 322
BccI CCATC 2 cut(s) 53, 247
BfaI CTAG 1 cut(s) 484
BisI GCNGC 1 cut(s) 336
BlpI GCTNAGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 356
Bpu1102I GCTNAGC 1 cut(s) 331
BpuEI CTTGAG 2 cut(s) 164, 335
BsaJI CCNNGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 321
BslFI GGGAC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 304
Bsp1720I GCTNAGC 1 cut(s) 331
Bsp19I CCATGG 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 377
Bst6I CTCTTC 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 15, 331
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 400
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 356
BstXI CCANNNNNNTGG 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 231
CspCI CAANNNNNGTGG 2 cut(s) 389, 424
CviAII CATG 6 cut(s) 90, 205, 368, 378, 397, 454
CviJI RGCY 8 cut(s) 71, 229, 249, 259, 304, 335, 389, 412
CviKI_1 RGCY 8 cut(s) 71, 229, 249, 259, 304, 335, 389, 412
DdeI CTNAG 2 cut(s) 15, 331
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 377
Eco57I CTGAAG 2 cut(s) 44, 315
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 6 cut(s) 93, 208, 371, 381, 400, 457
FalI AAGNNNNNCTT 4 cut(s) 60, 92, 288, 320
FaqI GGGAC 1 cut(s) 304
FatI CATG 6 cut(s) 89, 204, 367, 377, 396, 453
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 1 cut(s) 484
GluI GCNGC 1 cut(s) 336
Hin1II CATG 6 cut(s) 93, 208, 371, 381, 400, 457
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 2 cut(s) 4, 19
HphI GGTGA 4 cut(s) 172, 196, 234, 435
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 1 cut(s) 352
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 157
HpyCH4V TGCA 5 cut(s) 233, 338, 400, 426, 481
HpyF3I CTNAG 2 cut(s) 15, 331
Hsp92II CATG 6 cut(s) 93, 208, 371, 381, 400, 457
LguI GCTCTTC 1 cut(s) 379
LpnPI CCDG 2 cut(s) 288, 308
Lsp1109I GCAGC 1 cut(s) 322
MaeI CTAG 1 cut(s) 484
MaeIII GTNAC 2 cut(s) 184, 216
MboII GAAGA 5 cut(s) 37, 90, 308, 356, 396
MluCI AATT 4 cut(s) 125, 172, 221, 458
MnlI CCTC 2 cut(s) 82, 384
MseI TTAA 2 cut(s) 105, 194
MslI CAYNNNNRTG 2 cut(s) 395, 452
MspA1I CMGCKG 1 cut(s) 335
NcoI CCATGG 1 cut(s) 377
NlaIII CATG 6 cut(s) 93, 208, 371, 381, 400, 457
NmuCI GTSAC 2 cut(s) 184, 216
NspI RCATGY 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 379
PfeI GAWTC 2 cut(s) 4, 19
PflFI GACNNNGTC 1 cut(s) 311
PkrI GCNGC 1 cut(s) 337
PsyI GACNNNGTC 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 335
RseI CAYNNNNRTG 2 cut(s) 395, 452
SapI GCTCTTC 1 cut(s) 379
SaqAI TTAA 2 cut(s) 105, 194
SatI GCNGC 1 cut(s) 336
SetI ASST 9 cut(s) 16, 186, 194, 231, 251, 261, 306, 337, 395
SmiMI CAYNNNNRTG 2 cut(s) 395, 452
SmlI CTYRAG 2 cut(s) 179, 350
SmoI CTYRAG 2 cut(s) 179, 350
Sse9I AATT 4 cut(s) 125, 172, 221, 458
SspMI CTAG 1 cut(s) 484
StyI CCWWGG 1 cut(s) 377
TasI AATT 4 cut(s) 125, 172, 221, 458
TfiI GAWTC 2 cut(s) 4, 19
Tru1I TTAA 2 cut(s) 105, 194
Tru9I TTAA 2 cut(s) 105, 194
TseFI GTSAC 2 cut(s) 184, 216
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 2 cut(s) 184, 216
TspDTI ATGAA 6 cut(s) 59, 78, 81, 138, 156, 356
Tth111I GACNNNGTC 1 cut(s) 311
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 400
XspI CTAG 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.