Rorug06G0105900

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011152
Physical Location & Seq
Forward (+)
14239705 .. 14241493
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0105900.1

Sequence Viewer

Length: 1449 bp
ATGGCTTCATCATCTTCTTCTGATAACAAACCAAACCTTCCTCTGAAAAAAATTCCTGGTGACTATGGCTTGCCCTTGTTTGGCCCTATCAAAGATCGTTACGACTTTTTTTACAACCAAGGCAGAGACGACTTCTTCAAAACCCGAATGGCAAAGTACAAGTCCACAGTTTTCCGAACCAACATGCCTCCCGGTCCCTTCATTGCCTCGAATCCAAAGGTTGTCGTAGTTCTTGACGCCAAAAGCTTTCCTATCCTCTTCGACAATTCGAGAGTAGAAAAACGTAACATATTTGATGGCACTTACATGCCTTCCACTTCCTTCACCGGTGGCTATCGCATTTGCTCTTTTCTCGACCCTTCGGAACCCAAACACACTTCTCTCAAAAACTTCTTCTTGTCTCTACTCTCTGCTCGCCACAACAATGTTATCCCACTTTTCCAAACTCACTTCTCCGACCTCTTTGTCAAGGCCGAAGCTCAACTGGCCAAAGATGACAAATCGGACTTCAACTCACTCAATGACCAAACTTCCTTCAACTTCATCTTTGAGCTGTTCTTCGGTCAAAACCCATCAAGTACACCATTGGGATCCAAAGGCGCAACCCTTGTCACACTCTGGCTCTTACCCCAACTCACTCCTCAGATAACAGTGGGATTGCCCAAGTTGCTGAACGTTCTAGAAGATTTATTGCTGCACACGTTTCCCTTTCCCGCCCTTCTCGTCAAACCCGCTTATAACAAGCTCTACAAGGCTTTTTATGAGTCCGCAGCCAAGGCTTTGGAAGAGGCTGAGGGTACTTTTGGGATTTCAAAAGACGAAGCTTGCCACAACCTGATCTTCATGGTGTGCTTCAATGCTTATGGTGGCATGAAGCTCTTATTCCCTATTTTGCTGAAGTGGGTTTGTTTAGCTGGAGAGGATCTCCACGGCAAGCTCCGAGAGGAAATAAGGGCCGCTGTTAAAGATGCTGGAGGTAAGGTTACTCTTGCAGCGTTGGATAAGATGACATTGACCAAGTCGGTGGTTTATGAAGCTCTGAGGATTGATCCTGCGGTCCCGTTCCAGTATGCGAAGGCCAAGGAGGATCTGATAATCAACAGCCACGATGCCAGTTTTCAGATCAAGAAGGGAGAAGTGATCTTCGGATATCAGACCATTGCCACTAGAGATCCAAAGATCTTCGAGAGGCCTGAGGAGTTTGTAGGAGATAGGTTTGTTGGGGATGGAGAGAAGCTATTGAAGTACGTGTGGTGGTCCAACGGCCCGGAGACGGAGAACCCAACGGCCGCGAATAAGATTTGCGCGGGGAAGGACCTGGTTGTGCTGATGAACAGGATACTGTTGGTCGAGTTCTTCCTTCGTTATGACACTTTTACTGCCGATATTGGCACCTTTTTGTTGGGACCAAAAGTGACGTTTAAAACCTTGACCAAGGCTTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

482

Amino Acids

54.04

Weight (kDa)

8.66

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 310 - 409 2.3e-15 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AasI GACNNNNNNGTC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 1391
AccII CGCG 2 cut(s) 1292, 1307
AciI CCGC 7 cut(s) 714, 732, 768, 957, 1055, 1290, 1307
AclI AACGTT 1 cut(s) 675
AclWI GGATC 6 cut(s) 585, 598, 930, 1043, 1095, 1166
AcoI YGGCCR 2 cut(s) 486, 1287
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 917
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 4 cut(s) 158, 580, 799, 1247
AfiI CCNNNNNNNGG 2 cut(s) 80, 1273
AflIII ACRYGT 2 cut(s) 699, 1248
AgeI ACCGGT 1 cut(s) 326
AgsI TTSAA 6 cut(s) 139, 511, 538, 813, 856, 1243
AjnI CCWGG 2 cut(s) 55, 1317
Alw26I GTCTC 3 cut(s) 120, 405, 1265
AlwI GGATC 6 cut(s) 585, 598, 930, 1043, 1095, 1166
AoxI GGCC 8 cut(s) 82, 471, 486, 954, 1077, 1190, 1264, 1287
ApeKI GCWGC 3 cut(s) 694, 770, 992
ApoI RAATTY 1 cut(s) 51
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AsiGI ACCGGT 1 cut(s) 326
AspLEI GCGC 2 cut(s) 602, 1307
AspS9I GGNCC 8 cut(s) 83, 194, 954, 1057, 1257, 1265, 1315, 1406
AsuC2I CCSGG 2 cut(s) 192, 1268
AsuHPI GGTGA 2 cut(s) 71, 316
AvaII GGWCC 5 cut(s) 194, 1057, 1257, 1315, 1406
AxyI CCTNAGG 1 cut(s) 1194
BalI TGGCCA 1 cut(s) 488
BamHI GGATCC 1 cut(s) 590
BanI GGYRCC 1 cut(s) 1391
BbvCI CCTCAGC 1 cut(s) 792
BbvI GCAGC 3 cut(s) 681, 782, 1004
BccI CCATC 3 cut(s) 290, 580, 1220
BceAI ACGGC 3 cut(s) 946, 1279, 1302
BciT130I CCWGG 2 cut(s) 57, 1319
BciVI GTATCC 1 cut(s) 1332
BcnI CCSGG 2 cut(s) 192, 1268
BcoDI GTCTC 3 cut(s) 120, 405, 1265
BfaI CTAG 2 cut(s) 680, 1167
BfuI GTATCC 1 cut(s) 1332
BglII AGATCT 1 cut(s) 1179
BisI GCNGC 5 cut(s) 695, 771, 957, 993, 1290
BlsI GCNGC 5 cut(s) 696, 772, 958, 994, 1291
Bme1390I CCNGG 4 cut(s) 57, 192, 1268, 1319
Bme18I GGWCC 5 cut(s) 194, 1057, 1257, 1315, 1406
BmgT120I GGNCC 8 cut(s) 83, 194, 954, 1057, 1257, 1265, 1315, 1406
BmiI GGNNCC 6 cut(s) 196, 366, 592, 1059, 1393, 1407
BmrFI CCNGG 4 cut(s) 57, 192, 1268, 1319
BmsI GCATC 2 cut(s) 958, 1099
BplI GAGNNNNNCTC 2 cut(s) 909, 941
BpmI CTGGAG 2 cut(s) 936, 993
Bpu10I CCTNAGC 1 cut(s) 792
BpuMI CCSGG 2 cut(s) 192, 1268
BsaAI YACGTR 1 cut(s) 1249
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 5 cut(s) 118, 774, 928, 1080, 1434
BsaWI WCCGGW 1 cut(s) 326
BsaXI ACNNNNNCTCC 2 cut(s) 966, 996
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 1273
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 3 cut(s) 489, 1066, 1113
Bse21I CCTNAGG 1 cut(s) 1194
Bse3DI GCAATG 2 cut(s) 201, 1158
BseBI CCWGG 2 cut(s) 57, 1319
BseDI CCNNGG 5 cut(s) 118, 774, 928, 1080, 1434
BseGI GGATG 1 cut(s) 1231
BseLI CCNNNNNNNGG 2 cut(s) 80, 1273
BseMI GCAATG 2 cut(s) 201, 1158
BseMII CTCAG 4 cut(s) 656, 783, 1031, 1185
BseNI ACTGG 3 cut(s) 489, 1066, 1113
BseRI GAGGAG 2 cut(s) 630, 1211
BseX3I CGGCCG 1 cut(s) 1287
BseXI GCAGC 3 cut(s) 681, 782, 1004
BsgI GTGCAG 1 cut(s) 680
Bsh1236I CGCG 2 cut(s) 1292, 1307
Bsh1285I CGRYCG 1 cut(s) 1290
BshFI GGCC 8 cut(s) 84, 473, 488, 956, 1079, 1192, 1266, 1289
BshNI GGYRCC 1 cut(s) 1391
BshTI ACCGGT 1 cut(s) 326
BsiEI CGRYCG 1 cut(s) 1290
BsiSI CCGG 3 cut(s) 192, 327, 1268
BslFI GGGAC 3 cut(s) 180, 1043, 1419
BslI CCNNNNNNNGG 2 cut(s) 80, 1273
BsmAI GTCTC 3 cut(s) 120, 405, 1265
BsmBI CGTCTC 2 cut(s) 120, 1265
BsmFI GGGAC 3 cut(s) 180, 1043, 1419
BsnI GGCC 8 cut(s) 84, 473, 488, 956, 1079, 1192, 1266, 1289
BspACI CCGC 7 cut(s) 714, 732, 768, 957, 1055, 1290, 1307
BspANI GGCC 8 cut(s) 84, 473, 488, 956, 1079, 1192, 1266, 1289
BspCNI CTCAG 4 cut(s) 655, 784, 1032, 1186
BspFNI CGCG 2 cut(s) 1292, 1307
BspHI TCATGA 1 cut(s) 1445
BspLI GGNNCC 6 cut(s) 196, 366, 592, 1059, 1393, 1407
BspPI GGATC 6 cut(s) 585, 598, 930, 1043, 1095, 1166
BspT107I GGYRCC 1 cut(s) 1391
BsrDI GCAATG 2 cut(s) 201, 1158
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 3 cut(s) 489, 1066, 1113
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 5 cut(s) 118, 774, 928, 1080, 1434
BssNI GRCGYC 1 cut(s) 237
BssT1I CCWWGG 4 cut(s) 118, 774, 1080, 1434
Bst2UI CCWGG 2 cut(s) 57, 1319
Bst4CI ACNGT 3 cut(s) 169, 652, 1344
Bst6I CTCTTC 2 cut(s) 263, 780
BstACI GRCGYC 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 1249
BstC8I GCNNGC 4 cut(s) 71, 415, 826, 935
BstDEI CTNAG 4 cut(s) 642, 792, 1040, 1194
BstDSI CCRYGG 1 cut(s) 928
BstF5I GGATG 1 cut(s) 1231
BstFNI CGCG 2 cut(s) 1292, 1307
BstHHI GCGC 2 cut(s) 602, 1307
BstMAI GTCTC 3 cut(s) 120, 405, 1265
BstMCI CGRYCG 1 cut(s) 1290
BstMWI GCNNNNNNNGC 3 cut(s) 485, 667, 776
BstNI CCWGG 2 cut(s) 57, 1319
BstNSI RCATGY 2 cut(s) 187, 310
BstSCI CCNGG 4 cut(s) 55, 190, 1266, 1317
BstUI CGCG 2 cut(s) 1292, 1307
BstV1I GCAGC 3 cut(s) 681, 782, 1004
BstX2I RGATCY 5 cut(s) 590, 922, 1087, 1171, 1179
BstXI CCANNNNNNTGG 2 cut(s) 781, 1024
BstYI RGATCY 5 cut(s) 590, 922, 1087, 1171, 1179
BstZI CGGCCG 1 cut(s) 1287
Bsu36I CCTNAGG 1 cut(s) 1194
BsuI GTATCC 1 cut(s) 1332
BsuRI GGCC 8 cut(s) 84, 473, 488, 956, 1079, 1192, 1266, 1289
BtgI CCRYGG 1 cut(s) 928
BtsCI GGATG 1 cut(s) 1231
BtsIMutI CAGTG 1 cut(s) 657
Cac8I GCNNGC 4 cut(s) 71, 415, 826, 935
CciI TCATGA 1 cut(s) 1445
CfoI GCGC 2 cut(s) 602, 1307
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 8 cut(s) 83, 194, 954, 1057, 1257, 1265, 1315, 1406
CseI GACGC 1 cut(s) 245
CsiI ACCWGGT 1 cut(s) 1317
Csp6I GTAC 4 cut(s) 157, 579, 798, 1246
CspAI ACCGGT 1 cut(s) 326
CviAII CATG 5 cut(s) 184, 307, 844, 871, 1446
CviQI GTAC 4 cut(s) 157, 579, 798, 1246
DdeI CTNAG 4 cut(s) 642, 792, 1040, 1194
DraI TTTAAA 1 cut(s) 1423
DrdI GACNNNNNNGTC 1 cut(s) 464
DseDI GACNNNNNNGTC 1 cut(s) 464
EaeI YGGCCR 2 cut(s) 486, 1287
EagI CGGCCG 1 cut(s) 1287
Eam1104I CTCTTC 2 cut(s) 263, 780
EarI CTCTTC 2 cut(s) 263, 780
EclXI CGGCCG 1 cut(s) 1287
Eco130I CCWWGG 4 cut(s) 118, 774, 1080, 1434
Eco147I AGGCCT 1 cut(s) 1192
Eco32I GATATC 1 cut(s) 1151
Eco47I GGWCC 5 cut(s) 194, 1057, 1257, 1315, 1406
Eco52I CGGCCG 1 cut(s) 1287
Eco57I CTGAAG 1 cut(s) 917
Eco81I CCTNAGG 1 cut(s) 1194
EcoO109I RGGNCCY 1 cut(s) 1315
EcoRII CCWGG 2 cut(s) 55, 1317
EcoRV GATATC 1 cut(s) 1151
EcoT14I CCWWGG 4 cut(s) 118, 774, 1080, 1434
ErhI CCWWGG 4 cut(s) 118, 774, 1080, 1434
Esp3I CGTCTC 2 cut(s) 120, 1265
FaeI CATG 5 cut(s) 187, 310, 847, 874, 1449
FaqI GGGAC 3 cut(s) 180, 1043, 1419
FatI CATG 5 cut(s) 183, 306, 843, 870, 1445
FauI CCCGC 3 cut(s) 721, 739, 1300
Fnu4HI GCNGC 5 cut(s) 695, 771, 957, 993, 1290
FokI GGATG 1 cut(s) 1238
Fsp4HI GCNGC 5 cut(s) 695, 771, 957, 993, 1290
FspBI CTAG 2 cut(s) 680, 1167
GlaI GCGC 2 cut(s) 601, 1306
GluI GCNGC 5 cut(s) 695, 771, 957, 993, 1290
GsuI CTGGAG 2 cut(s) 936, 993
HaeIII GGCC 8 cut(s) 84, 473, 488, 956, 1079, 1192, 1266, 1289
HapII CCGG 3 cut(s) 192, 327, 1268
HgaI GACGC 1 cut(s) 245
HhaI GCGC 2 cut(s) 602, 1307
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 5 cut(s) 187, 310, 847, 874, 1449
Hin6I GCGC 2 cut(s) 600, 1305
HinP1I GCGC 2 cut(s) 600, 1305
HindIII AAGCTT 2 cut(s) 244, 822
HinfI GANTC 2 cut(s) 211, 764
HpaII CCGG 3 cut(s) 192, 327, 1268
HphI GGTGA 2 cut(s) 71, 316
Hpy166II GTNNAC 2 cut(s) 165, 581
Hpy188III TCNNGA 7 cut(s) 233, 270, 353, 680, 1126, 1186, 1446
Hpy8I GTNNAC 2 cut(s) 165, 581
HpyCH4III ACNGT 3 cut(s) 169, 652, 1344
HpyCH4IV ACGT 5 cut(s) 283, 675, 701, 1248, 1418
HpyCH4V TGCA 2 cut(s) 697, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 485, 667, 776
HpyF3I CTNAG 4 cut(s) 642, 792, 1040, 1194
HpySE526I ACGT 5 cut(s) 283, 675, 701, 1248, 1418
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 5 cut(s) 187, 310, 847, 874, 1449
HspAI GCGC 2 cut(s) 600, 1305
LmnI GCTCC 1 cut(s) 942
Lsp1109I GCAGC 3 cut(s) 681, 782, 1004
LweI GCATC 2 cut(s) 958, 1099
MabI ACCWGGT 1 cut(s) 1317
MaeI CTAG 2 cut(s) 680, 1167
MaeII ACGT 5 cut(s) 283, 675, 701, 1248, 1418
MaeIII GTNAC 6 cut(s) 59, 98, 284, 610, 982, 1414
MflI RGATCY 5 cut(s) 590, 922, 1087, 1171, 1179
MlsI TGGCCA 1 cut(s) 488
MluCI AATT 2 cut(s) 51, 265
MluNI TGGCCA 1 cut(s) 488
MlyI GAGTC 1 cut(s) 773
MmeI TCCRAC 3 cut(s) 480, 978, 1284
Mox20I TGGCCA 1 cut(s) 488
MscI TGGCCA 1 cut(s) 488
MseI TTAA 2 cut(s) 963, 1422
MslI CAYNNNNRTG 2 cut(s) 305, 423
Msp20I TGGCCA 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 959
MspI CCGG 3 cut(s) 192, 327, 1268
MspR9I CCNGG 4 cut(s) 57, 192, 1268, 1319
MvaI CCWGG 2 cut(s) 57, 1319
MvnI CGCG 2 cut(s) 1292, 1307
MwoI GCNNNNNNNGC 3 cut(s) 485, 667, 776
NciI CCSGG 2 cut(s) 192, 1268
NlaIII CATG 5 cut(s) 187, 310, 847, 874, 1449
NlaIV GGNNCC 6 cut(s) 196, 366, 592, 1059, 1393, 1407
NmuCI GTSAC 3 cut(s) 59, 610, 1414
NspI RCATGY 2 cut(s) 187, 310
PagI TCATGA 1 cut(s) 1445
PceI AGGCCT 1 cut(s) 1192
PfeI GAWTC 1 cut(s) 211
PflFI GACNNNGTC 1 cut(s) 1018
PinAI ACCGGT 1 cut(s) 326
PkrI GCNGC 5 cut(s) 696, 772, 958, 994, 1291
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
Ppu21I YACGTR 1 cut(s) 1249
PpuMI RGGWCCY 1 cut(s) 1315
PsiI TTATAA 1 cut(s) 738
Psp1406I AACGTT 1 cut(s) 675
Psp5II RGGWCCY 1 cut(s) 1315
Psp6I CCWGG 2 cut(s) 55, 1317
PspGI CCWGG 2 cut(s) 55, 1317
PspN4I GGNNCC 6 cut(s) 196, 366, 592, 1059, 1393, 1407
PspPI GGNCC 8 cut(s) 83, 194, 954, 1057, 1257, 1265, 1315, 1406
PspPPI RGGWCCY 1 cut(s) 1315
PsuI RGATCY 5 cut(s) 590, 922, 1087, 1171, 1179
PsyI GACNNNGTC 1 cut(s) 1018
RsaI GTAC 4 cut(s) 158, 580, 799, 1247
RsaNI GTAC 4 cut(s) 157, 579, 798, 1246
RseI CAYNNNNRTG 2 cut(s) 305, 423
SaqAI TTAA 2 cut(s) 963, 1422
SatI GCNGC 5 cut(s) 695, 771, 957, 993, 1290
Sau96I GGNCC 8 cut(s) 83, 194, 954, 1057, 1257, 1265, 1315, 1406
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 4 cut(s) 57, 192, 1268, 1319
SexAI ACCWGGT 1 cut(s) 1317
SfaNI GCATC 2 cut(s) 958, 1099
SgrAI CRCCGGYG 1 cut(s) 326
SinI GGWCC 5 cut(s) 194, 1057, 1257, 1315, 1406
SmiMI CAYNNNNRTG 2 cut(s) 305, 423
Sse9I AATT 2 cut(s) 51, 265
SseBI AGGCCT 1 cut(s) 1192
SsiI CCGC 7 cut(s) 714, 732, 768, 957, 1055, 1290, 1307
SspMI CTAG 2 cut(s) 680, 1167
StuI AGGCCT 1 cut(s) 1192
StyD4I CCNGG 4 cut(s) 55, 190, 1266, 1317
StyI CCWWGG 4 cut(s) 118, 774, 1080, 1434
TaaI ACNGT 3 cut(s) 169, 652, 1344
TaiI ACGT 5 cut(s) 286, 678, 704, 1251, 1421
TaqI TCGA 6 cut(s) 209, 261, 269, 354, 1185, 1350
TaqII GACCGA 1 cut(s) 551
TasI AATT 2 cut(s) 51, 265
TatI WGTACW 2 cut(s) 156, 578
TauI GCSGC 2 cut(s) 959, 1292
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 2 cut(s) 963, 1422
Tru9I TTAA 2 cut(s) 963, 1422
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 3 cut(s) 59, 610, 1414
TseI GCWGC 3 cut(s) 694, 770, 992
Tsp45I GTSAC 3 cut(s) 59, 610, 1414
TspDTI ATGAA 7 cut(s) 190, 532, 832, 887, 1047, 1346, 1431
TspGWI ACGGA 1 cut(s) 1289
TspRI CASTG 1 cut(s) 657
Tth111I GACNNNGTC 1 cut(s) 1018
VpaK11BI GGWCC 5 cut(s) 194, 1057, 1257, 1315, 1406
XapI RAATTY 1 cut(s) 51
XbaI TCTAGA 1 cut(s) 679
XceI RCATGY 2 cut(s) 187, 310
XspI CTAG 2 cut(s) 680, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.